R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
WARNING: Descriptions of 4 database sequences were not reported due to the
limiting value of parameter V = 50.
>gi|2507421|sp|P41568|SUI1_ARATH PROTEIN TRANSLATION FACTOR SUI1 HOMOLOG
>gi|7488392|pir||T06043 translation initiation factor eIF-2A -
Arabidopsis thaliana >gi|1800277|gb|AAB68033.1| (U81042)
translation initiation factor [Arabidopsis thaliana]
>gi|4490709|emb|CAB38843.1| (AL035680) translation initiation
factor [Arabidopsis thaliana] >gi|7269566|emb|CAB79568.1|
(AL161566) translation initiation factor [Arabidopsis thaliana]
Length = 113
Frame 1 hits (HSPs): __________________________________________________
Annotated Domains: ____________________________________________
__________________________________________________
Database sequence: | | | | 113
0 50 100
__________________
Annotated Domains:
BLOCKS BL01118A: Translation initiation factor 36..50
BLOCKS BL01118B: Translation initiation factor 53..90
PFAM SUI1: Translation initiation factor SUI1 11..109
PRODOM PD006070: SUI1(12) YCIH(3) Q22840(2) 12..108
PROSITE SUI1: Translation initiation factor SUI1 83..90
__________________
Plus Strand HSPs:
Score = 540 (190.1 bits), Expect = 4.5e-51, P = 4.5e-51
Identities = 102/113 (90%), Positives = 110/113 (97%), Frame = +1
Query: 181 MSELDDQIPTAFDPFADANADDSGAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKIL 360
MSELD Q+PTAFDPFADANA+DSGAG+KEYVHIRVQQRNGRKSLTTVQGLKKE+SY KIL
Sbjct: 1 MSELDSQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKIL 60
Query: 361 KDVKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKRDHIKIHGF 519
KD+KKEFCCNGTVVQD ELGQVIQLQGDQRKNVSTFLVQAG+VK+D+IKIHGF
Sbjct: 61 KDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113
>gi|9758256|dbj|BAB08755.1| (AB005232) protein translation factor Sui1 homolog
[Arabidopsis thaliana]
Length = 113
Frame 1 hits (HSPs): __________________________________________________
__________________________________________________
Database sequence: | | | | 113
0 50 100
Plus Strand HSPs:
Score = 536 (188.7 bits), Expect = 1.2e-50, P = 1.2e-50
Identities = 101/113 (89%), Positives = 109/113 (96%), Frame = +1
Query: 181 MSELDDQIPTAFDPFADANADDSGAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKIL 360
MSELD Q+PTAFDPFADAN +DSGAG+KEYVHIRVQQRNGRKSLTTVQGLKKE+SY KIL
Sbjct: 1 MSELDSQVPTAFDPFADANVEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKIL 60
Query: 361 KDVKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKRDHIKIHGF 519
KD+KKEFCCNGTVVQD ELGQVIQLQGDQRKNVSTFLVQAG+VK+D+IKIHGF
Sbjct: 61 KDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113
>gi|11135352|sp|Q9SQF4|SUI1_BRAOL PROTEIN TRANSLATION FACTOR SUI1 HOMOLOG
(TRANSLATION INITIATION FACTOR NPS45)
>gi|6165638|gb|AAF04624.1|AF098672_1 (AF098672) translation
initiation factor nps45 [Brassica oleracea]
Length = 113
Frame 1 hits (HSPs): __________________________________________________
__________________________________________________
Database sequence: | | | | 113
0 50 100
Plus Strand HSPs:
Score = 534 (188.0 bits), Expect = 1.9e-50, P = 1.9e-50
Identities = 101/113 (89%), Positives = 109/113 (96%), Frame = +1
Query: 181 MSELDDQIPTAFDPFADANADDSGAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKIL 360
MSELD Q+PTAFDPFADANA+DSGAG+KEYVHIRVQQRNGRKSLTTVQGLKKE+SY KIL
Sbjct: 1 MSELDSQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKIL 60
Query: 361 KDVKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKRDHIKIHGF 519
KD+KKEFCCNGTVVQD ELGQVIQLQGDQRKNVSTFLVQAG+VK+D I+IHGF
Sbjct: 61 KDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDDIQIHGF 113
>gi|462195|sp|P33278|SUI1_ORYSA PROTEIN TRANSLATION FACTOR SUI1 HOMOLOG (GOS2
PROTEIN) >gi|100682|pir||S21636 GOS2 protein - rice
>gi|20238|emb|CAA36190.1| (X51910) GOS2 [Oryza sativa]
>gi|3789950|gb|AAC67556.1| (AF094774) translation initiation factor
[Oryza sativa]
Length = 115
Frame 1 hits (HSPs): __________________________________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 115
0 50 100
__________________
Annotated Domains:
BLOCKS BL01118A: Translation initiation factor 38..52
BLOCKS BL01118B: Translation initiation factor 55..92
DOMO DM03462: TRANSLATIONINITIATIONFACTORSUI1 1..114
PFAM SUI1: Translation initiation factor SUI1 11..111
PRODOM PD006070: SUI1(12) YCIH(3) Q22840(2) 12..110
PROSITE SUI1: Translation initiation factor SUI1 85..92
__________________
Plus Strand HSPs:
Score = 532 (187.3 bits), Expect = 3.2e-50, P = 3.2e-50
Identities = 102/115 (88%), Positives = 110/115 (95%), Frame = +1
Query: 181 MSELDDQIPTAFDPFADANADDSGA--GSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNK 354
MS+LD QIPTAFDPFA+ANA DSGA GSK+YVH+R+QQRNGRKSLTTVQGLKKEFSYNK
Sbjct: 1 MSDLDIQIPTAFDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNK 60
Query: 355 ILKDVKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKRDHIKIHGF 519
ILKD+KKEFCCNGTVVQDPELGQVIQLQGDQRKNVS FLVQAGIVK++HIKIHGF
Sbjct: 61 ILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115
>gi|4585973|gb|AAD25609.1|AC005287_11 (AC005287) translation initiation factor
[Arabidopsis thaliana]
Length = 113
Frame 1 hits (HSPs): __________________________________________________
__________________________________________________
Database sequence: | | | | 113
0 50 100
Plus Strand HSPs:
Score = 531 (186.9 bits), Expect = 4.0e-50, P = 4.0e-50
Identities = 100/113 (88%), Positives = 111/113 (98%), Frame = +1
Query: 181 MSELDDQIPTAFDPFADANADDSGAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKIL 360
MS+L+ Q+PTAFDPFADANA+DSGAG+KEYVHIRVQQRNGRKSLTTVQGLKKE+SY+KIL
Sbjct: 1 MSDLEVQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYSKIL 60
Query: 361 KDVKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKRDHIKIHGF 519
KD+KKEFCCNGTVVQD ELGQVIQLQGDQRKNVSTFLVQAG+VK+D+IKIHGF
Sbjct: 61 KDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113
>gi|3334346|sp|O48650|SUI1_SALBA PROTEIN TRANSLATION FACTOR SUI1 HOMOLOG
>gi|2852445|dbj|BAA24697.1| (AB003378) SUI1 homolog [Salix bakko]
Length = 113
Frame 1 hits (HSPs): __________________________________________________
Annotated Domains: ____________________________________________
__________________________________________________
Database sequence: | | | | 113
0 50 100
__________________
Annotated Domains:
BLOCKS BL01118A: Translation initiation factor 36..50
BLOCKS BL01118B: Translation initiation factor 53..90
PFAM SUI1: Translation initiation factor SUI1 11..109
PRODOM PD006070: SUI1(12) YCIH(3) Q22840(2) 12..108
PROSITE SUI1: Translation initiation factor SUI1 83..90
__________________
Plus Strand HSPs:
Score = 529 (186.2 bits), Expect = 6.6e-50, P = 6.6e-50
Identities = 98/113 (86%), Positives = 111/113 (98%), Frame = +1
Query: 181 MSELDDQIPTAFDPFADANADDSGAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKIL 360
MSE D+ IPTAFDPFA+ANA+DSGAG+K+YVH+RVQQRNGRKSLTTVQGLKK++SYNKIL
Sbjct: 1 MSEFDNAIPTAFDPFAEANAEDSGAGTKDYVHVRVQQRNGRKSLTTVQGLKKDYSYNKIL 60
Query: 361 KDVKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKRDHIKIHGF 519
KD+KKEFCCNGTVVQDPELGQVIQLQGDQRKNVS+FLVQAGIVK+++IKIHGF
Sbjct: 61 KDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSSFLVQAGIVKKENIKIHGF 113
>gi|11135350|sp|Q9SM41|SUI1_SPOST PROTEIN TRANSLATION FACTOR SUI1 HOMOLOG
>gi|6478142|emb|CAB61837.1| (AJ242801) putative translation
initiation factor eIF-1 [Sporobolus stapfianus]
Length = 115
Frame 1 hits (HSPs): __________________________________________________
__________________________________________________
Database sequence: | | | | 115
0 50 100
Plus Strand HSPs:
Score = 529 (186.2 bits), Expect = 6.6e-50, P = 6.6e-50
Identities = 101/115 (87%), Positives = 110/115 (95%), Frame = +1
Query: 181 MSELDDQIPTAFDPFADANADDSGA--GSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNK 354
MS+LD QIPTAFDPF++ANA DSGA GSK+YVH+R+QQRNGRKSLTTVQGLKKEFSYNK
Sbjct: 1 MSDLDIQIPTAFDPFSEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNK 60
Query: 355 ILKDVKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKRDHIKIHGF 519
ILKD+KKEFCCNGTVVQDPELGQVIQLQGDQRKNVS FLVQAGIVK++HIKIHGF
Sbjct: 61 ILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115
>gi|3024657|sp|P56330|SUI1_MAIZE PROTEIN TRANSLATION FACTOR SUI1 HOMOLOG (GOS2
PROTEIN) >gi|2668740|gb|AAB88615.1| (AF034944) translation
initiation factor; GOS2 [Zea mays]
Length = 115
Frame 1 hits (HSPs): __________________________________________________
Annotated Domains: ____________________________________________
__________________________________________________
Database sequence: | | | | 115
0 50 100
__________________
Annotated Domains:
BLOCKS BL01118A: Translation initiation factor 38..52
BLOCKS BL01118B: Translation initiation factor 55..92
PFAM SUI1: Translation initiation factor SUI1 11..111
PRODOM PD006070: SUI1(12) YCIH(3) Q22840(2) 12..110
PROSITE SUI1: Translation initiation factor SUI1 85..92
__________________
Plus Strand HSPs:
Score = 527 (185.5 bits), Expect = 1.1e-49, P = 1.1e-49
Identities = 101/115 (87%), Positives = 110/115 (95%), Frame = +1
Query: 181 MSELDDQIPTAFDPFADANADDSGA--GSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNK 354
MS+LD QIPTAFDPFA+ANA DSGA GSK+YVH+R+QQRNGRKSLTTVQGLKKEFSY+K
Sbjct: 1 MSDLDIQIPTAFDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYSK 60
Query: 355 ILKDVKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKRDHIKIHGF 519
ILKD+KKEFCCNGTVVQDPELGQVIQLQGDQRKNVS FLVQAGIVK++HIKIHGF
Sbjct: 61 ILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115
>gi|7388263|sp|O82569|SUI1_PIMBR PROTEIN TRANSLATION FACTOR SUI1 HOMOLOG
>gi|3659907|gb|AAC61599.1| (AF091857) protein translation factor
SUI1 homolog [Pimpinella brachycarpa]
Length = 113
Frame 1 hits (HSPs): __________________________________________________
__________________________________________________
Database sequence: | | | | 113
0 50 100
Plus Strand HSPs:
Score = 449 (158.1 bits), Expect = 2.0e-41, P = 2.0e-41
Identities = 85/113 (75%), Positives = 97/113 (85%), Frame = +1
Query: 181 MSELDDQIPTAFDPFADANADDSGAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKIL 360
M + D QIPT+FDPFA+A D+ +KEYVHIR+QQRNGRKSLTTVQGLKKE SY+KIL
Sbjct: 1 MVDSDIQIPTSFDPFAEAEITDATGSTKEYVHIRIQQRNGRKSLTTVQGLKKELSYDKIL 60
Query: 361 KDVKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKRDHIKIHGF 519
KD+KK CCNGTVV D ELG+VIQLQGDQRKNVSTF+VQAGIVK+D IK+H F
Sbjct: 61 KDLKKALCCNGTVVNDKELGKVIQLQGDQRKNVSTFIVQAGIVKKDQIKVHNF 113
>gi|5918208|emb|CAB56294.1| (AJ249397) putative protein translation factor
[Phleum pratense]
Length = 95
Frame 1 hits (HSPs): __________________________________________________
__________________________________________________
Database sequence: | | | | | | 95
0 20 40 60 80
Plus Strand HSPs:
Score = 437 (153.8 bits), Expect = 3.7e-40, P = 3.7e-40
Identities = 83/94 (88%), Positives = 91/94 (96%), Frame = +1
Query: 244 DSGA--GSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDVKKEFCCNGTVVQDPEL 417
D+GA GSK+YVH+R+QQRNGRKSLTTVQGLKKEFSY+KILKD+KKEFCCNGTVVQDPEL
Sbjct: 2 DAGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYSKILKDLKKEFCCNGTVVQDPEL 61
Query: 418 GQVIQLQGDQRKNVSTFLVQAGIVKRDHIKIHGF 519
GQVIQLQGDQRKNVS FLVQAGIVK++HIKIHGF
Sbjct: 62 GQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 95
>gi|9758274|dbj|BAB08773.1| (AB005232) translation initiation factor-like
protein [Arabidopsis thaliana]
Length = 112
Frame 1 hits (HSPs): __________________________________________________
__________________________________________________
Database sequence: | | | | 112
0 50 100
Plus Strand HSPs:
Score = 436 (153.5 bits), Expect = 4.7e-40, P = 4.7e-40
Identities = 82/113 (72%), Positives = 96/113 (84%), Frame = +1
Query: 181 MSELDDQIPTAFDPFADANADDSGAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKIL 360
M ELD QIP+A+DPFA+A D G+KE +HIR+QQRNG+KSLTTVQGLKKE+SY +IL
Sbjct: 1 MVELDIQIPSAYDPFAEAK-DSDAPGAKENIHIRIQQRNGKKSLTTVQGLKKEYSYERIL 59
Query: 361 KDVKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKRDHIKIHGF 519
KD+KK+FCCNG VVQD ELG++IQLQGDQRK VS FLVQ GI K+D IKIHGF
Sbjct: 60 KDLKKDFCCNGNVVQDKELGKIIQLQGDQRKKVSQFLVQTGIAKKDQIKIHGF 112
>gi|11135371|sp|Q9UNQ9|SU12_HUMAN PROTEIN TRANSLATION FACTOR SUI1 HOMOLOG A121
>gi|4406207|gb|AAD19900.1| (AF100737) putative translation
initiation factor A121/Sui1 [Homo sapiens]
Length = 113
Frame 1 hits (HSPs): _______________________________________________
__________________________________________________
Database sequence: | | | | 113
0 50 100
Plus Strand HSPs:
Score = 346 (121.8 bits), Expect = 1.6e-30, P = 1.6e-30
Identities = 62/105 (59%), Positives = 83/105 (79%), Frame = +1
Query: 211 AFDPFADANADDS--GAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDVKKEFC 384
+FDPFADA+ D AG+++YVHIR+QQRNGRK+LTTVQG+ ++ K++K KK+F
Sbjct: 9 SFDPFADASKGDDLLPAGTEDYVHIRIQQRNGRKTLTTVQGIADDYDKKKLVKPFKKKFA 68
Query: 385 CNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKRDHIKIHGF 519
CNGTV++ PE G+VIQLQGDQRKN+ FLV+ G+ K D +K+HGF
Sbjct: 69 CNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 113
>gi|5031711 ref|NP_005866.1| translation factor sui1 homolog [Homo sapiens]
>gi|11450290 ref|XP_003295.1| translation factor sui1 homolog [Homo
sapiens] >gi|12644074|sp|O60739|SU13_HUMAN PROTEIN TRANSLATION
FACTOR SUI1 HOMOLOG GC20 >gi|4689152|gb|AAD27785.1|AF077052_1
(AF077052) protein translation factor sui1 homolog [Homo sapiens]
>gi|8778052|gb|AAF79182.1| (AF263452) translational factor eIF-1
[Homo sapiens]
Length = 113
Frame 1 hits (HSPs): _______________________________________________
__________________________________________________
Database sequence: | | | | 113
0 50 100
Plus Strand HSPs:
Score = 345 (121.4 bits), Expect = 2.1e-30, P = 2.1e-30
Identities = 61/105 (58%), Positives = 83/105 (79%), Frame = +1
Query: 211 AFDPFADANADDS--GAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDVKKEFC 384
+FDPFADA D AG+++Y+HIR+QQRNGRK+LTTVQG+ ++ K++K KK+F
Sbjct: 9 SFDPFADATKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFA 68
Query: 385 CNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKRDHIKIHGF 519
CNGTV++ PE G+VIQLQGDQRKN+ FL++ GIVK + +K+HGF
Sbjct: 69 CNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF 113
>gi|5032133 ref|NP_005792.1| putative translation initiation factor [Homo
sapiens] >gi|1174483|sp|P41567|SUI1_HUMAN PROTEIN TRANSLATION
FACTOR SUI1 HOMOLOG (SUI1ISO1) >gi|543015|pir||JC2042 translation
initiation factor eIF-2A - human >gi|450281|gb|AAA60602.1| (L26247)
isolog of yeast sui1 and rice gos2; putative [Homo sapiens]
>gi|5813823|gb|AAD52028.1|AF083441_1 (AF083441) SUI1 isolog [Homo
sapiens]
Length = 113
Frame 1 hits (HSPs): _______________________________________________
__________________________________________________
Database sequence: | | | | 113
0 50 100
Plus Strand HSPs:
Score = 344 (121.1 bits), Expect = 2.6e-30, P = 2.6e-30
Identities = 61/105 (58%), Positives = 83/105 (79%), Frame = +1
Query: 211 AFDPFADANADDS--GAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDVKKEFC 384
+FDPFADA+ D AG+++Y+HIR+QQRNGRK+LTTVQG+ ++ K++K KK+F
Sbjct: 9 SFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFA 68
Query: 385 CNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKRDHIKIHGF 519
CNGTV++ PE G+VIQLQGDQRKN+ FLV+ G+ K D +K+HGF
Sbjct: 69 CNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 113
>gi|5107727|pdb|2IF1| Human Translation Initiation Factor Eif1, Nmr, 29
Structures
Length = 126
Frame 1 hits (HSPs): __________________________________________
__________________________________________________
Database sequence: | | | | 126
0 50 100
Plus Strand HSPs:
Score = 344 (121.1 bits), Expect = 2.6e-30, P = 2.6e-30
Identities = 61/105 (58%), Positives = 83/105 (79%), Frame = +1
Query: 211 AFDPFADANADDS--GAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDVKKEFC 384
+FDPFADA+ D AG+++Y+HIR+QQRNGRK+LTTVQG+ ++ K++K KK+F
Sbjct: 22 SFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFA 81
Query: 385 CNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKRDHIKIHGF 519
CNGTV++ PE G+VIQLQGDQRKN+ FLV+ G+ K D +K+HGF
Sbjct: 82 CNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 126
>gi|7404466|sp|P48024|SUI1_MOUSE PROTEIN TRANSLATION FACTOR SUI1 HOMOLOG
Length = 113
Frame 1 hits (HSPs): _______________________________________________
__________________________________________________
Database sequence: | | | | 113
0 50 100
Plus Strand HSPs:
Score = 343 (120.7 bits), Expect = 3.4e-30, P = 3.4e-30
Identities = 60/105 (57%), Positives = 83/105 (79%), Frame = +1
Query: 211 AFDPFADANADDS--GAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDVKKEFC 384
+FDPFADA+ D AG+++Y+HIR+QQRNGRK+LTTVQG+ ++ K++K KK+F
Sbjct: 9 SFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFA 68
Query: 385 CNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKRDHIKIHGF 519
CNGTV++ PE G+VIQLQGDQRKN+ FL++ G+ K D +K+HGF
Sbjct: 69 CNGTVIEHPEYGEVIQLQGDQRKNICQFLIEIGLAKDDQLKVHGF 113
>gi|3152668|gb|AAC17112.1| (AF064607) GC20 protein [Homo sapiens]
Length = 113
Frame 1 hits (HSPs): _______________________________________________
__________________________________________________
Database sequence: | | | | 113
0 50 100
Plus Strand HSPs:
Score = 335 (117.9 bits), Expect = 2.4e-29, P = 2.4e-29
Identities = 60/105 (57%), Positives = 81/105 (77%), Frame = +1
Query: 211 AFDPFADANADDS--GAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDVKKEFC 384
+FDPFADA D AG ++Y+HIR+QQRNG K+LTTVQG+ ++ K++K KK+F
Sbjct: 9 SFDPFADATKGDDLLPAGLEDYIHIRIQQRNGGKTLTTVQGIADDYDKKKLVKAFKKKFA 68
Query: 385 CNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKRDHIKIHGF 519
CNGTV++ PE G+VIQLQGDQRKN+ FL++ GIVK + +K+HGF
Sbjct: 69 CNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF 113
>gi|4868333|gb|AAD31266.1|AF129888_1 (AF129888) Sui1 homolog [Mus musculus]
Length = 113
Frame 1 hits (HSPs): _______________________________________________
__________________________________________________
Database sequence: | | | | 113
0 50 100
Plus Strand HSPs:
Score = 324 (114.1 bits), Expect = 3.5e-28, P = 3.5e-28
Identities = 57/105 (54%), Positives = 80/105 (76%), Frame = +1
Query: 211 AFDPFADANADDS--GAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDVKKEFC 384
+FDPFADA+ D AG+++Y+HIR+QQRNGRK+LTTVQG+ ++ K++K KK+F
Sbjct: 9 SFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFA 68
Query: 385 CNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKRDHIKIHGF 519
CNGTV++ PE G+VIQLQGDQR N+ L++ G+ D +K+HGF
Sbjct: 69 CNGTVIEHPEYGEVIQLQGDQRXNICQXLIEIGLAXDDQLKVHGF 113
>gi|6324085 ref|NP_014155.1| translation initiation factor 3 (eIF3); Sui1p
[Saccharomyces cerevisiae] >gi|417828|sp|P32911|SUI1_YEAST PROTEIN
TRANSLATION FACTOR SUI1 >gi|320775|pir||S31245 translation
initiation factor SUI1 [validated] - yeast (Saccharomyces
cerevisiae) >gi|172787|gb|AAA35131.1| (M77514) SUI1 protein
[Saccharomyces cerevisiae] >gi|1255973|emb|CAA65499.1| (X96722) ORF
N0905 [Saccharomyces cerevisiae] >gi|1302282|emb|CAA96150.1|
(Z71520) ORF YNL244c [Saccharomyces cerevisiae]
Length = 108
Frame 1 hits (HSPs): _______________________________________________
__________________________________________________
Database sequence: | | | | | | | 108
0 20 40 60 80 100
Plus Strand HSPs:
Score = 315 (110.9 bits), Expect = 3.1e-27, P = 3.1e-27
Identities = 61/103 (59%), Positives = 81/103 (78%), Frame = +1
Query: 211 AFDPFADANADDSGAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDVKKEFCCN 390
+FDPFAD DD A S Y+HIR+QQRNGRK+LTTVQG+ +E+ +ILK +KK+F CN
Sbjct: 8 SFDPFADTG-DDETATSN-YIHIRIQQRNGRKTLTTVQGVPEEYDLKRILKVLKKDFACN 65
Query: 391 GTVVQDPELGQVIQLQGDQRKNVSTFLV-QAGIVKRDHIKIHGF 519
G +V+DPE+G++IQLQGDQR V F++ Q G+ K++ IKIHGF
Sbjct: 66 GNIVKDPEMGEIIQLQGDQRAKVCEFMISQLGLQKKN-IKIHGF 108
>gi|11135384|sp|Q9VZS3|SUI1_DROME PROTEIN TRANSLATION FACTOR SUI1 HOMOLOG
>gi|7292337|gb|AAF47744.1| (AE003477) CG17737 gene product
[Drosophila melanogaster]
Length = 110
Frame 1 hits (HSPs): ______________________________________________
__________________________________________________
Database sequence: | | | | | | | 110
0 20 40 60 80 100
Plus Strand HSPs:
Score = 311 (109.5 bits), Expect = 8.3e-27, P = 8.3e-27
Identities = 60/101 (59%), Positives = 76/101 (75%), Frame = +1
Query: 217 DPFADA---NADDSGAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDVKKEFCC 387
DPFADA N DD G VHIR+QQRNGRK+LTTVQGL E+ KI++ KKEF C
Sbjct: 10 DPFADAIKGNDDDIQDG---LVHIRIQQRNGRKTLTTVQGLSAEYDLKKIVRSCKKEFAC 66
Query: 388 NGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKRDHIKIHGF 519
NGTV++ PE G+V+QLQGDQR+N+ +L + G+ K D +K+HGF
Sbjct: 67 NGTVIEHPEYGEVLQLQGDQRENICQWLTKVGLAKPDQLKVHGF 110
>gi|1174481|sp|P42678|SUI1_ANOGA PROTEIN TRANSLATION FACTOR SUI1 HOMOLOG
>gi|409031|gb|AAA18901.1| (U02588) translation initiation factor
[Anopheles gambiae]
Length = 110
Frame 1 hits (HSPs): _______________________________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | | 110
0 20 40 60 80 100
__________________
Annotated Domains:
BLOCKS BL01118A: Translation initiation factor 33..47
BLOCKS BL01118B: Translation initiation factor 50..87
DOMO DM03462: TRANSLATIONINITIATIONFACTORSUI1 1..109
PFAM SUI1: Translation initiation factor SUI1 8..106
PRODOM PD006070: SUI1(12) YCIH(3) Q22840(2) 8..100
PROSITE SUI1: Translation initiation factor SUI1 80..87
__________________
Plus Strand HSPs:
Score = 305 (107.4 bits), Expect = 3.6e-26, P = 3.6e-26
Identities = 60/102 (58%), Positives = 78/102 (76%), Frame = +1
Query: 214 FDPFADA--NAD-DSGAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDVKKEFC 384
FDPFADA AD D G VHIR+QQRNGRK+LTTVQGL E+ KI++ KKEF
Sbjct: 9 FDPFADAIKGADYDVQDG---LVHIRIQQRNGRKTLTTVQGLSAEYDLKKIVRACKKEFA 65
Query: 385 CNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKRDHIKIHGF 519
CNGTV++ PE G+V+QLQGDQR+N+ +L ++G+ K + +K+HGF
Sbjct: 66 CNGTVIEHPEYGEVLQLQGDQRENICQWLTKSGLAKPEQLKVHGF 110
>gi|10998414|gb|AAG25932.1| (AF267716) translation factor sui1-like protein
[Sus scrofa]
Length = 85
Frame 1 hits (HSPs): __________________________________________________
__________________________________________________
Database sequence: | | | | | | 85
0 20 40 60 80
Plus Strand HSPs:
Score = 302 (106.3 bits), Expect = 7.5e-26, P = 7.5e-26
Identities = 51/85 (60%), Positives = 70/85 (82%), Frame = +1
Query: 265 EYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDVKKEFCCNGTVVQDPELGQVIQLQGD 444
+Y+HIR+QQRNGRK+LTTVQG+ ++ K++K KK+F CNGTV++ PE G+VIQLQGD
Sbjct: 1 DYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGD 60
Query: 445 QRKNVSTFLVQAGIVKRDHIKIHGF 519
QRKN+ FL++ GIVK + +K+HGF
Sbjct: 61 QRKNICQFLLEVGIVKEEQLKVHGF 85
>gi|2829672|sp|P79060|SUI1_SCHPO PROTEIN TRANSLATION FACTOR SUI1
>gi|4240113|dbj|BAA74836.1| (AB001574) SUI1 homologue
[Schizosaccharomyces pombe]
Length = 101
Frame 1 hits (HSPs): __________________________________________________
Annotated Domains: ________________________________________________
__________________________________________________
Database sequence: | | | | | || 101
0 20 40 60 80 100
__________________
Annotated Domains:
BLOCKS BL01118A: Translation initiation factor 24..38
BLOCKS BL01118B: Translation initiation factor 41..78
PFAM SUI1: Translation initiation factor SUI1 1..97
PRODOM PD006070: SUI1(12) YCIH(3) Q22840(2) 3..96
PROSITE SUI1: Translation initiation factor SUI1 71..78
__________________
Plus Strand HSPs:
Score = 298 (104.9 bits), Expect = 2.0e-25, P = 2.0e-25
Identities = 59/101 (58%), Positives = 75/101 (74%), Frame = +1
Query: 217 DPFADANADDSGAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDVKKEFCCNGT 396
DPFAD DD A +HIR+QQRNGRK+LTTVQGL +EF +IL+ +KK+F CNGT
Sbjct: 3 DPFADTGDDD--AQPLNNIHIRIQQRNGRKTLTTVQGLPREFDQKRILRALKKDFACNGT 60
Query: 397 VVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKRDHIKIHGF 519
+V+D +LG+VIQLQGDQR V FL Q +++ +IKIHGF
Sbjct: 61 IVKDDDLGEVIQLQGDQRIKVMEFLTQQLGLQKKNIKIHGF 101
>gi|7493217|pir||T39951 protein translation factor sui1 - fission yeast
(Schizosaccharomyces pombe) >gi|4106682|emb|CAA22621.1| (AL035065)
protein translation factor sui1. [Schizosaccharomyces pombe]
Length = 109
Frame 1 hits (HSPs): ______________________________________________
__________________________________________________
Database sequence: | | | | | | | 109
0 20 40 60 80 100
Plus Strand HSPs:
Score = 298 (104.9 bits), Expect = 2.0e-25, P = 2.0e-25
Identities = 59/101 (58%), Positives = 75/101 (74%), Frame = +1
Query: 217 DPFADANADDSGAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDVKKEFCCNGT 396
DPFAD DD A +HIR+QQRNGRK+LTTVQGL +EF +IL+ +KK+F CNGT
Sbjct: 11 DPFADTGDDD--AQPLNNIHIRIQQRNGRKTLTTVQGLPREFDQKRILRALKKDFACNGT 68
Query: 397 VVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKRDHIKIHGF 519
+V+D +LG+VIQLQGDQR V FL Q +++ +IKIHGF
Sbjct: 69 IVKDDDLGEVIQLQGDQRIKVMEFLTQQLGLQKKNIKIHGF 109
>gi|1711595|sp|P51971|SUI1_CHICK PROTEIN TRANSLATION FACTOR SUI1 HOMOLOG
Length = 79
Frame 1 hits (HSPs): __________________________________________________
Annotated Domains: _______________________________________________
__________________________________________________
Database sequence: | | | | | 79
0 20 40 60
__________________
Annotated Domains:
PFAM SUI1: Translation initiation factor SUI1 1..75
PROSITE SUI1: Translation initiation factor SUI1 49..56
__________________
Plus Strand HSPs:
Score = 271 (95.4 bits), Expect = 1.4e-22, P = 1.4e-22
Identities = 47/79 (59%), Positives = 63/79 (79%), Frame = +1
Query: 283 VQQRNGRKSLTTVQGLKKEFSYNKILKDVKKEFCCNGTVVQDPELGQVIQLQGDQRKNVS 462
+QQRNGRK+LTTVQG+ ++ K++K KK+F CNGTV++ PE G+VIQLQGDQRKN+
Sbjct: 1 IQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNIC 60
Query: 463 TFLVQAGIVKRDHIKIHGF 519
FLV+ G+ K D +K+HGF
Sbjct: 61 QFLVEIGLAKDDQLKVHGF 79
>gi|2137799|pir||S58180 sui1 protein - mouse (fragment)
>gi|927435|emb|CAA90519.1| (Z50159) sui1 [Mus musculus]
Length = 76
Frame 1 hits (HSPs): __________________________________________________
Annotated Domains: ______
__________________________________________________
Database sequence: | | | | | 76
0 20 40 60
__________________
Annotated Domains:
PROSITE SUI1: Translation initiation factor SUI1 46..53
__________________
Plus Strand HSPs:
Score = 257 (90.5 bits), Expect = 4.4e-21, P = 4.4e-21
Identities = 44/76 (57%), Positives = 60/76 (78%), Frame = +1
Query: 292 RNGRKSLTTVQGLKKEFSYNKILKDVKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFL 471
RNGRK+LTTVQG+ ++ K++K KK+F CNGTV++ PE G+VIQLQGDQRKN+ FL
Sbjct: 1 RNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFL 60
Query: 472 VQAGIVKRDHIKIHGF 519
++ G+ K D +K+HGF
Sbjct: 61 IEIGLAKDDQLKVHGF 76
>gi|8571434|gb|AAF76883.1| (AF261104) SUL1 [Neospora caninum]
Length = 113
Frame 1 hits (HSPs): ______________________________________________
__________________________________________________
Database sequence: | | | | 113
0 50 100
Plus Strand HSPs:
Score = 254 (89.4 bits), Expect = 9.1e-21, P = 9.1e-21
Identities = 53/101 (52%), Positives = 67/101 (66%), Frame = +1
Query: 217 DPFADANADDSGAGSKEY-VHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDVKKEFCCNG 393
DPFA+ + S GS + +HIR QQRNGRK +TTVQGL K K+++ +KKE CNG
Sbjct: 12 DPFANDTSQFSVGGSTTHLIHIRNQQRNGRKXVTTVQGLDKALDLKKMVRALKKELNCNG 71
Query: 394 TVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKRDHIKIHG 516
TV++D E G VIQLQGDQR V FL + I + I+IHG
Sbjct: 72 TVIEDAEHGSVIQLQGDQRHAVKEFLEREDICSGEQIRIHG 112
>gi|9756521|emb|CAC02155.1| (AL390114) probable protein translation factor sui1
homolog [Leishmania major]
Length = 110
Frame 1 hits (HSPs): _____________________________________
__________________________________________________
Database sequence: | | | | | | | 110
0 20 40 60 80 100
Plus Strand HSPs:
Score = 199 (70.1 bits), Expect = 6.1e-15, P = 6.1e-15
Identities = 35/81 (43%), Positives = 58/81 (71%), Frame = +1
Query: 271 VHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDVKKEFCCNGTVVQDPELGQVIQLQGDQR 450
VHIRVQQR G+K +TTVQGL ++ ++ +I ++ ++ + CNGTV+ P+ G VIQLQG+
Sbjct: 30 VHIRVQQRKGKKFVTTVQGLNQKLNFRRINREFQRRWGCNGTVISTPDAGTVIQLQGNWS 89
Query: 451 KNVSTFLVQAGIVKRDHIKIH 513
+N+ FL+ + ++++IH
Sbjct: 90 ENIKQFLLDEHMATENNLEIH 110
>gi|1076616|pir||S50119 activating factor (clone 12) - common tobacco
>gi|499888|gb|AAA53420.1| (L33876) ORF [Nicotiana tabacum]
Length = 81
Frame 1 hits (HSPs): ________________________________
__________________________________________________
Database sequence: | | | | | | 81
0 20 40 60 80
Plus Strand HSPs:
Score = 185 (65.1 bits), Expect = 1.9e-13, P = 1.9e-13
Identities = 37/52 (71%), Positives = 46/52 (88%), Frame = +1
Query: 172 SSFMSELDDQIPTAFDPFADANADDSGA-GSKEYVHIRVQQRNGRKSLTTVQG 327
+ +M ++D QIP+AFDPFA+A DSGA G+KEYVHIR+QQRNG+KSLTTVQG
Sbjct: 29 AKYMVDIDVQIPSAFDPFAEAK--DSGAPGAKEYVHIRIQQRNGKKSLTTVQG 79
>gi|7508611|pir||T16945 hypothetical protein T27F7.3 - Caenorhabditis elegans
>gi|9886064|gb|AAG01561.1| (U58762) weakly similar to protein
translation factor SUI1 family [Caenorhabditis elegans]
Length = 283
Frame 1 hits (HSPs): __________ ______
__________________________________________________
Database sequence: | | | | | | | 283
0 50 100 150 200 250
Plus Strand HSPs:
Score = 107 (37.7 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 19/31 (61%), Positives = 24/31 (77%), Frame = +1
Query: 385 CNGTVVQDPELGQVIQLQGDQRKNVSTFLVQ 477
CNGT+V+ PE G+VIQL GDQR V FL++
Sbjct: 252 CNGTIVEHPEYGEVIQLTGDQRDKVKDFLIK 282
Score = 105 (37.0 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 23/53 (43%), Positives = 35/53 (66%), Frame = +1
Query: 217 DPFADANADDSGAGSKEYV-HIRVQQRNGRKSLTTVQGLKKEFSYNKILKDVKK 375
D F +D G ++ V HIR+QQR GRK++TTVQG+ E+ +I++ +KK
Sbjct: 11 DAFEQLETED---GVRQGVCHIRIQQRTGRKTITTVQGIGTEYDLKRIVQYLKK 61
>gi|5441569|emb|CAB46834.1| (AJ388532) Sui1iso1 protein [Canis familiaris]
Length = 59
Frame 1 hits (HSPs): ____________________________________________
__________________________________________________
Database sequence: | | | | 59
0 20 40
Plus Strand HSPs:
Score = 153 (53.9 bits), Expect = 4.6e-10, P = 4.6e-10
Identities = 28/51 (54%), Positives = 40/51 (78%), Frame = +1
Query: 211 AFDPFADANADDS--GAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKI 357
+FDPFADA+ D AG+++Y+HIR+QQRNGRK+LTTVQG+ ++ K+
Sbjct: 9 SFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKL 59
>gi|12742110 ref|XP_012901.1| similar to putative translation initiation factor
(H. sapiens) [Homo sapiens]
Length = 150
Frame 1 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | 150
0 50 100
Plus Strand HSPs:
Score = 146 (51.4 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 25/45 (55%), Positives = 33/45 (73%), Frame = +1
Query: 385 CNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKRDHIKIHGF 519
CN TV++ P+ G+VIQLQ DQ KN+ FLV G+ K DH ++HGF
Sbjct: 106 CNDTVIEHPQYGEVIQLQSDQCKNICQFLVDTGLTKEDHGQVHGF 150
>gi|10581967|gb|AAG20628.1| (AE005132) Vng2584c [Halobacterium sp. NRC-1]
Length = 97
Frame 1 hits (HSPs): ______________________________________
__________________________________________________
Database sequence: | | | | | | 97
0 20 40 60 80
Plus Strand HSPs:
Score = 102 (35.9 bits), Expect = 0.00022, P = 0.00022
Identities = 25/77 (32%), Positives = 40/77 (51%), Frame = +1
Query: 253 AGSKEYVHIRVQQRNGRKSLTTVQGLK-KEFSYNKILKDVKKEFCCNGTVVQDPELGQVI 429
A + + IR+ +R K +T ++G K+ + + D+K +F C GTV +D E I
Sbjct: 21 AKESQQIEIRIDERRYGKEVTVIEGFDPKDVDLDSLSSDLKSKFACGGTV-EDGE----I 75
Query: 430 QLQGDQRKNVSTFLVQAG 483
+LQG+ V FL G
Sbjct: 76 ELQGNHSGRVEDFLRNKG 93
>gi|2500941|sp|Q55397|Y546_SYNY3 HYPOTHETICAL 11.9 KD PROTEIN SLL0546
>gi|7444671|pir||S75752 hypothetical protein sll0546 -
Synechocystis sp. (strain PCC 6803) >gi|1001246|dbj|BAA10487.1|
(D64003) hypothetical protein [Synechocystis sp.]
Length = 111
Frame 1 hits (HSPs): ________________________________________
Annotated Domains: _____________________________________________
__________________________________________________
Database sequence: | | | | 111
0 50 100
__________________
Annotated Domains:
BLOCKS BL01118A: Translation initiation factor 40..54
BLOCKS BL01118B: Translation initiation factor 60..97
PFAM SUI1: Translation initiation factor SUI1 14..111
PRODOM PD006070: SUI1(12) YCIH(3) Q22840(2) 15..109
PROSITE SUI1: Translation initiation factor SUI1 85..92
__________________
Plus Strand HSPs:
Score = 100 (35.2 bits), Expect = 0.00038, P = 0.00038
Identities = 26/90 (28%), Positives = 50/90 (55%), Frame = +1
Query: 214 FDPFADANADDSGAGSKEYVHIRVQQ-RNGRK--SLTTVQGLKKEFSYNKILKDVKKEFC 384
F P AD +++ + ++R+Q R+GRK ++T V GL+ + L K FC
Sbjct: 15 FGPVADPLSEEQIDLPPQQQNVRIQATRSGRKGKTVTVVSGLQLSAMGQQALLKALKSFC 74
Query: 385 CNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAG 483
+G +++ +++QGDQR+ + +L++ G
Sbjct: 75 GSGGTLKE----DCVEIQGDQREKILAYLLKQG 103
>gi|7521578|pir||A75147 protein translation factor sui1 homolog. PAB7082 -
Pyrococcus abyssi (strain Orsay) >gi|5457766|emb|CAB49256.1|
(AJ248284) PROTEIN TRANSLATION FACTOR SUI1 HOMOLOG. [Pyrococcus
abyssi]
Length = 99
Frame 1 hits (HSPs): ________________________________________
__________________________________________________
Database sequence: | | | | | | 99
0 20 40 60 80
Plus Strand HSPs:
Score = 98 (34.5 bits), Expect = 0.00064, P = 0.00064
Identities = 29/83 (34%), Positives = 42/83 (50%), Frame = +1
Query: 262 KEYVHIRVQQRNGR--KSLTTVQGL-KKEFSYNKILKDVKKEFCCNGTVVQDPELGQVIQ 432
KE IRV R K T ++G+ +KEF +I K +K + C GT G+ I+
Sbjct: 19 KEQQRIRVYTERARYGKIKTIIEGIDEKEFDLEEIAKKLKAKLACGGTAKN----GR-IE 73
Query: 433 LQGDQRKNVSTFLVQAGIVKRDHIKI 510
LQGD R + L + G D I++
Sbjct: 74 LQGDHRDRIKKLLAELGF-SEDLIEV 98
>gi|2500940|sp|Q57902|SUI1_METJA PROTEIN TRANSLATION FACTOR SUI1 HOMOLOG
>gi|2128010|pir||G64357 hypothetical protein homolog MJ0463 -
Methanococcus jannaschii >gi|1591165|gb|AAB98452.1| (U67497)
conserved hypothetical protein [Methanococcus jannaschii]
Length = 103
Frame 1 hits (HSPs): ________________________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | | 103
0 20 40 60 80 100
__________________
Annotated Domains:
BLOCKS BL01118A: Translation initiation factor 34..48
BLOCKS BL01118B: Translation initiation factor 51..88
PFAM SUI1: Translation initiation factor SUI1 8..102
PRODOM PD006074: SUI1(3) 2..21
PRODOM PD006070: SUI1(12) YCIH(3) Q22840(2) 23..97
PROSITE SUI1: Translation initiation factor SUI1 76..83
__________________
Plus Strand HSPs:
Score = 96 (33.8 bits), Expect = 0.0011, P = 0.0011
Identities = 31/86 (36%), Positives = 44/86 (51%), Frame = +1
Query: 253 AGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDVKKEFC-CNGTVVQDPELGQVI 429
A ++ + I V +R K +T ++G K L K+ C C GTV +D I
Sbjct: 22 AKEEQKIKIYVTKRRFGKLMTIIEGFDTSVIDLKELAKKLKDICACGGTV-KD----NTI 76
Query: 430 QLQGDQRKNVSTFLVQAGIVKRDHIKI 510
+LQGD RK V+ LV+ G RD I+I
Sbjct: 77 ELQGDHRKKVAEELVKMGF-SRDSIEI 102
>gi|7444670|pir||H72542 hypothetical protein APE1629 - Aeropyrum pernix (strain
K1) >gi|5105316|dbj|BAA80629.1| (AP000062) 101aa long hypothetical
protein translation factor SUI1 [Aeropyrum pernix]
Length = 101
Frame 1 hits (HSPs): ___________________________________
__________________________________________________
Database sequence: | | | | | || 101
0 20 40 60 80 100
Plus Strand HSPs:
Score = 96 (33.8 bits), Expect = 0.0011, P = 0.0011
Identities = 23/74 (31%), Positives = 41/74 (55%), Frame = +1
Query: 262 KEYVHIRVQQRNGRKSLTTVQGL-KKEFSYNKILKDVKKEFCCNGTVVQDPELGQVIQLQ 438
++ + IR+++R + +T ++G+ +KEF+ K+ +K GT G+ I+LQ
Sbjct: 22 EQIIKIRLEKRRFGREVTIIEGINEKEFNLKKLASTLKSRLATGGTAKN----GR-IELQ 76
Query: 439 GDQRKNVSTFLVQAG 483
GD R V LV+ G
Sbjct: 77 GDHRHRVKKILVELG 91
>gi|141377|sp|P14021|SUI1_METVA PROTEIN TRANSLATION FACTOR SUI1 HOMOLOG
>gi|80968|pir||S05611 hypothetical protein A - Methanococcus
vannielii >gi|44755|emb|CAA34687.1| (X16720) ORF a [Methanococcus
vannielii]
Length = 102
Frame 1 hits (HSPs): _________________________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | | 102
0 20 40 60 80 100
__________________
Annotated Domains:
BLOCKS BL01118A: Translation initiation factor 33..47
BLOCKS BL01118B: Translation initiation factor 50..87
PFAM SUI1: Translation initiation factor SUI1 7..101
PRODOM PD006074: SUI1(3) 1..20
PRODOM PD006070: SUI1(12) YCIH(3) Q22840(2) 22..97
PROSITE SUI1: Translation initiation factor SUI1 75..82
__________________
Plus Strand HSPs:
Score = 93 (32.7 bits), Expect = 0.0024, P = 0.0024
Identities = 28/86 (32%), Positives = 41/86 (47%), Frame = +1
Query: 253 AGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDVKKEFC-CNGTVVQDPELGQVI 429
A ++ + + V +R K +T V G + K L K+ C C GTV +D I
Sbjct: 21 AKEEQKIKVYVTKRRFGKLMTVVDGFDADLIDVKDLAKKLKDICACGGTVKKDS-----I 75
Query: 430 QLQGDQRKNVSTFLVQAGIVKRDHIKI 510
+LQGD RK L++ G K D I +
Sbjct: 76 ELQGDHRKKAEEILIKMGFSK-DMIDV 101
>gi|11498519 ref|NP_069747.1| conserved hypothetical protein [Archaeoglobus
fulgidus] >gi|3122889|sp|O29348|SUI1_ARCFU PROTEIN TRANSLATION
FACTOR SUI1 HOMOLOG >gi|7444669|pir||B69364 conserved hypothetical
protein AF0914 - Archaeoglobus fulgidus >gi|2649680|gb|AAB90322.1|
(AE001040) conserved hypothetical protein [Archaeoglobus fulgidus]
Length = 101
Frame 1 hits (HSPs): _____________________________________
__________________________________________________
Database sequence: | | | | | || 101
0 20 40 60 80 100
Plus Strand HSPs:
Score = 90 (31.7 bits), Expect = 0.0052, P = 0.0052
Identities = 22/77 (28%), Positives = 41/77 (53%), Frame = +1
Query: 253 AGSKEYVHIRVQQRNGRKSLTTVQGLKK-EFSYNKILKDVKKEFCCNGTVVQDPELGQVI 429
A ++++ I+ +R K +T ++G+ K E + ++ K +K + C GTV VI
Sbjct: 21 AKEQQFIVIKTGKRRYGKEVTIIEGIDKGEINLEELAKYLKSKLACGGTVKNG-----VI 75
Query: 430 QLQGDQRKNVSTFLVQAG 483
+LQG+ V L++ G
Sbjct: 76 ELQGNHVNRVKELLIKKG 93
>gi|11281988|pir||T50946 hypothetical protein B24P7.10 [imported] - Neurospora
crassa >gi|9367249|emb|CAB97266.1| (AL389890) conserved
hypothetical protein [Neurospora crassa]
Length = 187
Frame 1 hits (HSPs): __________________________
__________________________________________________
Database sequence: | | | | | 187
0 50 100 150
Plus Strand HSPs:
Score = 100 (35.2 bits), Expect = 0.019, P = 0.019
Identities = 30/95 (31%), Positives = 49/95 (51%), Frame = +1
Query: 226 ADANADDSGAGSKEYVHIRVQQRNGRKSLTTVQGLKK-EFSYNKILKDVKKEFCCNGTVV 402
A+ D A S V I+ +RN RK +T+V GL+ K+ KD K+F +V
Sbjct: 81 AEQKQADKRANS--VVTIKRIERNKRKYVTSVSGLEAFGLELKKVAKDFGKKFATGSSVT 138
Query: 403 QDPELGQVIQLQGDQRKNVSTFLVQA-GIVKRDHIKI 510
+ P G+ I +QGD + F+++ V D+I++
Sbjct: 139 KVPSGGEEIVVQGDVSGEIEEFILEKYKEVPEDNIEL 175
>gi|3122888|sp|O26118|SUI1_METTH PROTEIN TRANSLATION FACTOR SUI1 HOMOLOG
>gi|7444668|pir||B69000 ribosomal protein SUI1 - Methanobacterium
thermoautotrophicum (strain Delta H) >gi|2621038|gb|AAB84511.1|
(AE000795) ribosomal protein SUI1 [Methanothermobacter
thermautotrophicus]
Length = 101
Frame 1 hits (HSPs): ____________________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | || 101
0 20 40 60 80 100
__________________
Annotated Domains:
BLOCKS BL01118A: Translation initiation factor 32..46
BLOCKS BL01118B: Translation initiation factor 49..86
PFAM SUI1: Translation initiation factor SUI1 6..100
PRODOM PD162539: SUI1_METTH 1..31
PRODOM PD006070: SUI1(12) YCIH(3) Q22840(2) 33..95
__________________
Plus Strand HSPs:
Score = 80 (28.2 bits), Expect = 0.070, P = 0.067
Identities = 25/76 (32%), Positives = 40/76 (52%), Frame = +1
Query: 283 VQQRNGRKSLTTVQGLKK-EFSYNKILKDVKKEFCCNGTVVQDPELGQVIQLQGDQRKNV 459
V++R G K +T ++G+ + + ++ K +K C GT + GQ I+LQGD +K V
Sbjct: 31 VRRRFG-KVMTIIEGIDEHDIDIKELTKILKARCACGGTAKK----GQ-IELQGDHKKKV 84
Query: 460 STFLVQAGIVKRDHIKI 510
L G D I+I
Sbjct: 85 KEVLADMGF-SSDTIEI 100
>gi|818341|gb|AAB07199.1| (U24773) envelope glycoprotein, V3 region [Human
immunodeficiency virus type 1]
Length = 106
Frame 1 hits (HSPs): ___________________________________
__________________________________________________
Database sequence: | | | | | | | 106
0 20 40 60 80 100
Plus Strand HSPs:
Score = 74 (26.0 bits), Expect = 1.6, P = 0.80
Identities = 21/74 (28%), Positives = 37/74 (50%), Frame = +1
Query: 262 KEYVHIRVQQ--RNGRKSLTTVQGLKKEFSYNKILKDVKKEFCCNGTVVQDPELGQVIQL 435
KEYV I + N R+S+ G + ++ I+ D+++ C V + L Q+++
Sbjct: 27 KEYVEINCTRLSNNTRRSINIGPG-RAFYTTGAIIGDIRQAHCNISRVKWNNTLKQIVEK 85
Query: 436 QGDQRKNVSTFLVQA 480
GDQ KN + Q+
Sbjct: 86 LGDQFKNKTIVFTQS 100
>gi|2342846|gb|AAB67772.1| (U56380) envelope glycoprotein gp120 V3 region
[Human immunodeficiency virus type 1]
Length = 73
Frame 1 hits (HSPs): _____________________________________________
__________________________________________________
Database sequence: | | | | | 73
0 20 40 60
Plus Strand HSPs:
Score = 66 (23.2 bits), Expect = 2.6, P = 0.92
Identities = 19/66 (28%), Positives = 35/66 (53%), Frame = +1
Query: 262 KEYVHIRVQQ--RNGRKSLTTVQGLKKEFSYNKILKDVKKEFCCNGTVVQDPELGQVIQL 435
K+ V I + N RKS+T G + ++ +I+ D++K C + + LGQ+++
Sbjct: 4 KDSVEINCTRPSNNTRKSITMGPG-RVYYTTGQIIGDIRKAHCNISSTKWNNALGQIVKK 62
Query: 436 QGDQRKN 456
+Q KN
Sbjct: 63 LREQFKN 69
>gi|818255|gb|AAB07156.1| (U24730) envelope glycoprotein, V3 region [Human
immunodeficiency virus type 1]
Length = 106
Frame 1 hits (HSPs): ___________________________________
__________________________________________________
Database sequence: | | | | | | | 106
0 20 40 60 80 100
Plus Strand HSPs:
Score = 73 (25.7 bits), Expect = 3.0, P = 0.95
Identities = 21/74 (28%), Positives = 37/74 (50%), Frame = +1
Query: 262 KEYVHIRVQQRNG--RKSLTTVQGLKKEFSYNKILKDVKKEFCCNGTVVQDPELGQVIQL 435
KEYV I + N R+S+T G + ++ I+ D+++ C + L Q+++
Sbjct: 27 KEYVEINCTRPNNNTRRSITIGPG-RAFYTTGDIIGDIRQAHCNISRAKWNDTLKQIVKK 85
Query: 436 QGDQRKNVSTFLVQA 480
GDQ KN + Q+
Sbjct: 86 LGDQFKNKTIVFKQS 100
>gi|11177662|gb|AAG32386.1| (AF307218) envelope glycoprotein [Human
immunodeficiency virus type 1]
Length = 87
Frame 1 hits (HSPs): _______________________________________________
__________________________________________________
Database sequence: | | | | | | 87
0 20 40 60 80
Plus Strand HSPs:
Score = 65 (22.9 bits), Expect = 3.3, P = 0.96
Identities = 23/82 (28%), Positives = 37/82 (45%), Frame = +1
Query: 217 DPFADANADDSGAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDVKKEFCC-NG 393
D F D NA KE V I + N + G + F ++ D+++ +C NG
Sbjct: 6 DNFTD-NAKTIIVQLKEPVEINCTRPNNNTRRSIHIGPGRAFYATDVIGDIRRAYCTING 64
Query: 394 TVVQDPELGQVIQLQGDQRKNVS 462
T D L Q+ + G+Q +N +
Sbjct: 65 TKWNDT-LRQIAKKLGEQFENTT 86
>gi|818383|gb|AAB07220.1| (U24794) envelope glycoprotein, V3 region [Human
immunodeficiency virus type 1]
Length = 93
Frame 1 hits (HSPs): ____________________________________
__________________________________________________
Database sequence: | | | | | | 93
0 20 40 60 80
Plus Strand HSPs:
Score = 67 (23.6 bits), Expect = 4.0, P = 0.98
Identities = 20/66 (30%), Positives = 34/66 (51%), Frame = +1
Query: 262 KEYVHIRVQQ--RNGRKSLTTVQGLKKEFSYNKILKDVKKEFCCNGTVVQDPELGQVIQL 435
KE V I + N R+S+T G + ++ I+ D+++ C V + L Q+++
Sbjct: 23 KESVEINCTRPSNNTRRSITIGPG-RAFYTTGAIIGDIRQAHCNISRVKWNNTLKQIVEK 81
Query: 436 QGDQRKN 456
GDQ KN
Sbjct: 82 LGDQFKN 88
>gi|6540364|gb|AAF16194.1|AF204463_1 (AF204463) envelope glycoprotein [Human
immunodeficiency virus type 1]
Length = 205
Frame 1 hits (HSPs): ___________________________
__________________________________________________
Database sequence: | | | | | | 205
0 50 100 150 200
Plus Strand HSPs:
Score = 81 (28.5 bits), Expect = 5.1, P = 0.99
Identities = 28/109 (25%), Positives = 52/109 (47%), Frame = +1
Query: 193 DDQIPTAFDPFADANADDSGAGSKEYVHIRVQQRNG--RKSLTTVQGLKKEFSYNKILKD 366
++++ D F++ NA KE V I + N RKS+ G + ++ +KI+ D
Sbjct: 1 EEEVVVRSDNFSN-NAKTIIVQLKEAVEINCTRPNNNTRKSIHIGPG-RAFYATDKIIGD 58
Query: 367 VKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKRDHIKIHGF 519
+++ C + L QV++ G+Q KN +T + + I +H F
Sbjct: 59 IRQAHCNISRAKWNDTLRQVVEKLGEQFKNKTTIVFKQSAGGDPEIVMHSF 109
>gi|7491400|pir||T39556 hypothetical protein SPBC16C6.05 - fission yeast
(Schizosaccharomyces pombe) >gi|2853097|emb|CAA16913.1| (AL021767)
hypothetical protein [Schizosaccharomyces pombe]
Length = 190
Frame 1 hits (HSPs): _______________________
__________________________________________________
Database sequence: | | | | | 190
0 50 100 150
Plus Strand HSPs:
Score = 80 (28.2 bits), Expect = 5.6, P = 1.0
Identities = 25/82 (30%), Positives = 40/82 (48%), Frame = +1
Query: 271 VHIRVQQRNGRKSLTTVQGLKK-EFSYNKILKDVKKEFCCNGTVVQDPELGQVIQLQGDQ 447
V I+ +R RK +TTVQGL K K + +F +V + + I +QGD
Sbjct: 99 VLIKTIERTKRKRVTTVQGLDAFGIETKKAAKMLANKFATGASVTKTADKKDEIVVQGDL 158
Query: 448 RKNVSTFLVQA-GIVKRDHIKI 510
++ F+++ V D+IKI
Sbjct: 159 NYDIFDFILEKFKEVPEDNIKI 180
>gi|1838929|dbj|BAA05559.1| (D26561) N-terminal portion of ORF for E1 protein
[Human papillomavirus type 5b]
Length = 226
Frame 1 hits (HSPs): ___________________
__________________________________________________
Database sequence: | | | | | | 226
0 50 100 150 200
Plus Strand HSPs:
Score = 81 (28.5 bits), Expect = 6.3, P = 1.0
Identities = 23/83 (27%), Positives = 36/83 (43%), Frame = +1
Query: 160 GLSESSFMSELDDQIPTAFDPFADANADDSGAGSKEYVHIRVQQRNGRKSLTTVQGLKKE 339
GL E + +E +D P P D+ DD G +H R+ K T + K+
Sbjct: 116 GL-ELTLNNEAEDVTPEVEVPAIDSRPDDEGGSGDVDIHYTSLLRSSNKKATLMAKFKES 174
Query: 340 FS--YNKILKDVKK-EFCCNGTVV 402
F +N++ + K + CC VV
Sbjct: 175 FGVGFNELTRQFKSHKTCCKDWVV 198
>gi|2126118|pir||S63621 cymJ protein - Klebsiella oxytoca
>gi|854237|emb|CAA60009.1| (X86014) cymJ [Klebsiella oxytoca]
>gi|3676230|emb|CAA09673.1| (AJ011521) CymJ protein [Klebsiella
oxytoca]
Length = 268
Frame 1 hits (HSPs): ____________________
__________________________________________________
Database sequence: | | | | | | | 268
0 50 100 150 200 250
Plus Strand HSPs:
Score = 81 (28.5 bits), Expect = 8.5, P = 1.0
Identities = 28/105 (26%), Positives = 49/105 (46%), Frame = +1
Query: 76 GFGSLPYLSRIETLNLRSGLSN--LVGRTFGLSESSFMSELDDQIPTAFDPFADANADDS 249
GFG + + L++G S+ + + LS SS S +D F AD N +
Sbjct: 10 GFGFTKTDANVYINLLKNGRSSGYKIAKEISLSRSSVYSSIDSLYKNGFIFMADGNTKEY 69
Query: 250 GAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDVKKEFCCN 390
A S E + ++ ++++ + LKKE S +++ +KEF N
Sbjct: 70 QAKSPELIFSNIE----KQTIENINVLKKELS--RMMLQEEKEFIYN 110
WARNING: HSPs involving 4 database sequences were not reported due to the
limiting value of parameter B = 50.
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.99
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.353 0.154 0.606
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.371 0.166 0.569
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.325 0.143 0.413
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.351 0.156 0.541
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.361 0.164 0.560
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.360 0.161 0.566
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 201 201 10. 77 3 12 22 0.094 35
31 0.10 38
+2 0 202 202 10. 77 3 12 22 0.095 35
31 0.11 38
+1 0 202 202 10. 77 3 12 22 0.095 35
31 0.11 38
-1 0 202 202 10. 77 3 12 22 0.095 35
31 0.11 38
-2 0 202 202 10. 77 3 12 22 0.095 35
31 0.11 38
-3 0 201 201 10. 77 3 12 22 0.094 35
31 0.10 38
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 54
No. of states in DFA: 595 (59 KB)
Total size of DFA: 207 KB (256 KB)
Time to generate neighborhood: 0.01u 0.01s 0.02t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 185.43u 0.95s 186.38t Elapsed: 00:00:31
Total cpu time: 185.46u 1.02s 186.48t Elapsed: 00:00:31
Start: Wed Jan 23 13:54:50 2002 End: Wed Jan 23 13:55:21 2002
WARNINGS ISSUED: 2
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000