R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
>gi|7485400|pir||T02643 hypothetical protein F12C20.4 - Arabidopsis thaliana
>gi|3426036|gb|AAC32235.1| (AC005168) unknown protein [Arabidopsis
thaliana]
Length = 646
Frame 2 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | | 646
0 150 300 450 600
Plus Strand HSPs:
Score = 495 (174.2 bits), Expect = 2.6e-46, P = 2.6e-46
Identities = 102/158 (64%), Positives = 127/158 (80%), Frame = +2
Query: 131 MSPASRSKSKDRKANKDAQKASAKPTGSSNAVAGVPASAYNPLLGTFHTLD-MSPAPTSP 307
MSPA++SKSKD+K K+AQKAS KP+ S N + + AS YNPLLGTF LD +S A SP
Sbjct: 6 MSPATKSKSKDKKTGKEAQKASPKPSLSVNGNSSLAASGYNPLLGTFQALDSVSIASISP 65
Query: 308 IHSNGRFRNIDETDEHPVNSLVAGVEYDSVSNNGSWSGESEEHKDKSSNVPVRPESVPGA 487
+ + RFR+IDE D VN G+E DSVSNNGS SGESE+HK+K++N+P++ E +PGA
Sbjct: 66 LQYS-RFRSIDEAD---VN----GIESDSVSNNGSCSGESEDHKEKTTNLPLKQEVIPGA 117
Query: 488 DNDKREKIRQKNERKHQRQKERRAQELHERCTGYLMSRK 604
DNDKREK+RQKNERKHQRQKERRAQEL+E+C+ YL+SRK
Sbjct: 118 DNDKREKVRQKNERKHQRQKERRAQELNEKCSTYLISRK 156
>gi|9759379|dbj|BAB10030.1| (AB007727) gene_id:MXC9.8~pir||T02643~strong
similarity to unknown protein [Arabidopsis thaliana]
Length = 619
Frame 2 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | | | 619
0 150 300 450 600
Plus Strand HSPs:
Score = 458 (161.2 bits), Expect = 2.2e-42, P = 2.2e-42
Identities = 92/158 (58%), Positives = 118/158 (74%), Frame = +2
Query: 131 MSPASRSKSKDRKANKDAQKASAKPTGSSNAVAGVPASAYNPLLGTFHTLD-MSPAPTSP 307
MS AS+ KS+D+K D+QK +K +GS + V YNPLLGTF T++ +S +S
Sbjct: 1 MSSASKMKSRDKKVMNDSQKTPSKASGSMGG-SSVVVGGYNPLLGTFQTIESLSATGSSS 59
Query: 308 IHSNGRFRNIDETDEHPVNSLVAGVEYDSVSNNGSWSGESEEHKDK--SSNVPVRPESVP 481
+H+NGRFR+IDE+D G + DSVSNNGSWSGESE+HK+K S+++ + E +P
Sbjct: 60 LHNNGRFRHIDESDS-------TGADCDSVSNNGSWSGESEDHKEKVPSTSIAAKQEIIP 112
Query: 482 GADNDKREKIRQKNERKHQRQKERRAQELHERCTGYLMSRK 604
GADNDKR+K+R KNERKHQRQKE+RAQELHERC YLMSRK
Sbjct: 113 GADNDKRDKMRLKNERKHQRQKEKRAQELHERCCQYLMSRK 153
>gi|1401244|gb|AAB03391.1| (U59479) neutrophil protein [Homo sapiens]
Length = 99
Frame 2 hits (HSPs): _______________________________________________
__________________________________________________
Database sequence: | | | | | | 99
0 20 40 60 80
Plus Strand HSPs:
Score = 76 (26.8 bits), Expect = 0.20, P = 0.18
Identities = 25/92 (27%), Positives = 41/92 (44%), Frame = +2
Query: 287 SPAPTSPIHSNGRFRNIDETDEHPVNSL---VAGVEYDSVSNNGSWSGESEEHKDKSSNV 457
S + S S GR N D V+ +G+E S+ G S +++ KDK+S
Sbjct: 8 SSSSESRSRSRGRGHNRDRKHRRSVDRKRRDTSGLERSHKSSKGGSSRDTKGSKDKNSRS 67
Query: 458 PVRPESVPGADNDKREKIRQKNERKHQRQKERR 556
R S+ + + R + +RK R+ +RR
Sbjct: 68 D-RKRSISESSRSGKRSSRSERDRKSYRKDKRR 99
>gi|3021392|emb|CAA71377.1| (Y10351) nuclear protein SDK3 [Homo sapiens]
Length = 711
Frame 2 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | | | 711
0 150 300 450 600
Plus Strand HSPs:
Score = 95 (33.4 bits), Expect = 0.87, P = 0.58
Identities = 34/141 (24%), Positives = 62/141 (43%), Frame = +2
Query: 143 SRSKSKDRKANKDAQKASAKPTGSSNA-VAGVPASAYNPLLGTFHTLDMSPAPTSPIHSN 319
S S S ++ + S+ +GSS++ + +S+ + G + S + S S
Sbjct: 571 SSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSSTSGSSGRDSSSSTSSSSESRSRSR 630
Query: 320 GRFRNIDETDEHPVNSL---VAGVEYDSVSNNGSWSGESEEHKDKSSNVPVRPESVPGAD 490
GR N D V+ +G+E S+ G S +++ KDK+S R S+ +
Sbjct: 631 GRGHNRDRKHRRSVDRKRRDTSGLERSHKSSKGGSSRDTKGSKDKNSRSD-RKRSISESS 689
Query: 491 NDKREKIRQKNERKHQRQKERR 556
+ R + +RK R+ +RR
Sbjct: 690 RSGKRSSRSERDRKSDRKDKRR 711
>gi|6563230|gb|AAF17209.1|AF112222_1 (AF112222) nuclear protein SDK3 [Homo
sapiens]
Length = 717
Frame 2 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | | | 717
0 150 300 450 600
Plus Strand HSPs:
Score = 95 (33.4 bits), Expect = 0.88, P = 0.59
Identities = 34/141 (24%), Positives = 62/141 (43%), Frame = +2
Query: 143 SRSKSKDRKANKDAQKASAKPTGSSNA-VAGVPASAYNPLLGTFHTLDMSPAPTSPIHSN 319
S S S ++ + S+ +GSS++ + +S+ + G + S + S S
Sbjct: 577 SSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSSTSGSSGRDSSSSTSSSSESRSRSR 636
Query: 320 GRFRNIDETDEHPVNSL---VAGVEYDSVSNNGSWSGESEEHKDKSSNVPVRPESVPGAD 490
GR N D V+ +G+E S+ G S +++ KDK+S R S+ +
Sbjct: 637 GRGHNRDRKHRRSVDRKRRDTSGLERSHKSSKGGSSRDTKGSKDKNSRSD-RKRSISESS 695
Query: 491 NDKREKIRQKNERKHQRQKERR 556
+ R + +RK R+ +RR
Sbjct: 696 RSGKRSSRSERDRKSDRKDKRR 717
>gi|6679407 ref|NP_032917.1| pinin [Mus musculus] >gi|2570049|emb|CAA69960.1|
(Y08701) Pinin [Mus musculus]
Length = 725
Frame 2 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | | | 725
0 150 300 450 600
Plus Strand HSPs:
Score = 95 (33.4 bits), Expect = 0.89, P = 0.59
Identities = 34/143 (23%), Positives = 61/143 (42%), Frame = +2
Query: 143 SRSKSKDRKANKDAQKASAKPTGSSNAVAGVPASAYNPLLGTFH---TLDMSPAPTSPIH 313
SRS S ++ +S + S ++ + +S+ + G+ + S + S
Sbjct: 583 SRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSSTSGSSSRDSSSSTSSSSESRSR 642
Query: 314 SNGRFRNIDETDEHPVNSL---VAGVEYDSVSNNGSWSGESEEHKDKSSNVPVRPESVPG 484
S GR N D ++ +G+E S+ G S + + KDKSS P R S+
Sbjct: 643 SRGRGHNRDRKHRRSMDRKRRDTSGLERSHKSSKGGSSRDRKGSKDKSSR-PDRKRSISE 701
Query: 485 ADNDKREKIRQKNERKHQRQKERR 556
+ + R + +RK R+ +RR
Sbjct: 702 SSRSGKRSSRSERDRKSDRKDKRR 725
>gi|3021600|emb|CAA71376.1| (Y10350) nuclear protein SDK2 [Xenopus laevis]
Length = 689
Frame 2 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | | 689
0 150 300 450 600
Plus Strand HSPs:
Score = 94 (33.1 bits), Expect = 1.1, P = 0.66
Identities = 41/164 (25%), Positives = 70/164 (42%), Frame = +2
Query: 68 PSPSSSSTLPFPKPQGH*VLRMSPASRSKSKDRKANKDAQKASAKPTGSSNAVAGVPASA 247
P P+S + +G +M + S S ++ + + + + SS+ + +S+
Sbjct: 526 PKPASVHKTKRSRSKGRNKNKMGKSRSSSSSSSSSSSSSSTSGSSSSSSSSQSSSSSSSS 585
Query: 248 YNPLLGTFHTLDMSPAPTSPIHSNGRFRNIDETD----EHPVNSLVAGVEYDSVSNNGSW 415
+ + S + S S GR DE EH AGVE S+ GS
Sbjct: 586 SSGSSSRDSSSSSSSSSESRSRSRGRGHARDEKRRRMAEHKRRD-GAGVERSHKSSKGS- 643
Query: 416 SGESEEHKDKSSNVPVRPESVPGADNDKREKIRQKNERKHQRQKERR 556
+S+ KDKSS + + G+ + KR R + +RK R+ +RR
Sbjct: 644 GRDSKGSKDKSSRSDRKRTTSEGSRSGKRPS-RNERDRKSDRKDKRR 689
>gi|4581463|emb|CAA70874.1| (Y09703) MEMA [Homo sapiens]
Length = 586
Frame 2 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | | 586
0 150 300 450
Plus Strand HSPs:
Score = 93 (32.7 bits), Expect = 1.1, P = 0.68
Identities = 34/144 (23%), Positives = 61/144 (42%), Frame = +2
Query: 128 RMSPASRSKSKDRKANKDAQKASAKPTGSSNAVAGVPASAYNPLLGTFHTLDMSPAPTSP 307
R S +S S S ++ + +S + S++ + S + + T S + S
Sbjct: 443 RSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSSTSGSSSRDSSSST-STSSSSESR 501
Query: 308 IHSNGRFRNIDETDEHPVNSL---VAGVEYDSVSNNGSWSGESEEHKDKSSNVPVRPESV 478
S GR N D V+ +G+E S+ G S +++ KDK+S R S+
Sbjct: 502 SRSRGRGHNRDRKHRRSVDRKRRDTSGLERSHKSSKGGGSRDTKGSKDKNSRSD-RKRSI 560
Query: 479 PGADNDKREKIRQKNERKHQRQKERR 556
+ + R + +RK R+ +RR
Sbjct: 561 SESSRSGKRSSRSERDRKSDRKDKRR 586
>gi|108365|pir||A35419 neutrophil protein - pig (fragment)
>gi|164673|gb|AAA63449.1| (M55701) neutrophil protein [Sus scrofa]
Length = 284
Frame 2 hits (HSPs): _________________________
__________________________________________________
Database sequence: | | | | | | | 284
0 50 100 150 200 250
Plus Strand HSPs:
Score = 89 (31.3 bits), Expect = 1.2, P = 0.69
Identities = 32/141 (22%), Positives = 61/141 (43%), Frame = +2
Query: 143 SRSKSKDRKANKDAQKASAKPTGSSNAVAGVPASAYNPLLGTFHTLDMSPAPT-SPIHSN 319
S S S ++ + S+ +GSS++ + +S+ + + + + S S
Sbjct: 144 SSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSDQVAAAARDSSSSTTSSSESRSRSR 203
Query: 320 GRFRNIDETDEHPVNSL---VAGVEYDSVSNNGSWSGESEEHKDKSSNVPVRPESVPGAD 490
GR N D V+ +G+E S+ G S +++ KDK+S R S+ +
Sbjct: 204 GRAHNRDRKHRRSVDRKRRDASGLERSHKSSKGGSSRDTKGSKDKNSRSD-RKRSISESS 262
Query: 491 NDKREKIRQKNERKHQRQKERR 556
+ R + +RK R+ +RR
Sbjct: 263 RSGKRSSRSERDRKSDRKDKRR 284
>gi|2126736|pir||S61816 M-like protein enn precursor - Streptococcus pyogenes
(serotype M65) (fragment) >gi|694074|gb|AAA87921.1| (U20840) emml
gene product [Streptococcus pyogenes]
Length = 82
Frame 2 hits (HSPs): ____________________________________
__________________________________________________
Database sequence: | | | | | | 82
0 20 40 60 80
Plus Strand HSPs:
Score = 67 (23.6 bits), Expect = 2.1, P = 0.87
Identities = 15/58 (25%), Positives = 36/58 (62%), Frame = +2
Query: 413 WSGESEEHKDKSSNVPVRPESVPGADND-KREKIRQKNE--RKHQRQKERRAQELHER 577
++ ++E D +++V V E+ + D +R +R+ ++ ++HQ++K+++ QE ER
Sbjct: 23 FANQTEVKADSNNSVSVNNEAKEKSSEDVERHYLRKLDQEHKEHQKEKQQQQQEQEER 80
>gi|3913454|sp|P91699|DECA_DROPS DECAPENTAPLEGIC PROTEIN PRECURSOR (DPP-C
PROTEIN) >gi|1698637|gb|AAC47553.1| (U63856) decapentaplegic
protein [Drosophila pseudoobscura]
Length = 621
Frame 2 hits (HSPs): ____________
Annotated Domains: _____ _________________________________ _________
__________________________________________________
Database sequence: | | | | | | 621
0 150 300 450 600
__________________
Annotated Domains:
Entrez Domain: POLY-ALA. 45..57
Entrez Domain: POLY-ASN. 88..92
Entrez Domain: POLY-ASN. 95..104
Entrez Domain: POLY-GLN. 163..173
Entrez Domain: POLY-GLY. 483..495
Entrez glycosylation site: POTENTIAL. 149
Entrez glycosylation site: POTENTIAL. 365
Entrez glycosylation site: POTENTIAL. 400
Entrez glycosylation site: POTENTIAL. 562
PFAM TGFb_propeptide: TGF-beta propeptide 233..468
PFAM TGF-beta: Transforming growth factor bet 520..621
PRODOM PD012072: DECA(3) P91720(1) 1..41
PRODOM PD017162: DECA(3) 111..238
PRODOM PD011362: DECA(4) P91720(1) 240..325
PRODOM PD000853: BMP4(7) BMP2(5) TGF2(5) 327..481
PRODOM PD000357: GDF8(10) TGF1(9) IHBA(8) 520..620
PROSITE TGF_BETA: TGF-beta family signature. 538..553
__________________
Plus Strand HSPs:
Score = 91 (32.0 bits), Expect = 2.1, P = 0.88
Identities = 28/143 (19%), Positives = 66/143 (46%), Frame = +2
Query: 149 SKSKDRKANKDAQKASAKPTGSSNAVAGVPASAYNPLLGTFHTLDMSPAPTSPIHSNGRF 328
++++ A+ A A+A T ++ A + A A+NP + S + + + R
Sbjct: 39 TRTEPSAASAAAAAATATATATATATTAL-AKAFNPFNELLYKSSDSDSDNNNNNYKNRN 97
Query: 329 RNIDETDEHPVNSLVAGVEYDSVSNNGSWSGESEEHKDKSSNVPVRPESVPGADNDKREK 508
N + ++ P N+ G ++ N ++ + D+ N +P+ + +K K
Sbjct: 98 NNNNNLNKGPRNNKNKGNKHSKSDANRQFNEVHKPRTDQLENSKNKPKQLV----NKTNK 153
Query: 509 IRQKNERKHQRQKERRAQELHER 577
+ K+++ HQ Q++++ Q+ H +
Sbjct: 154 MAVKDQKHHQPQQQQQQQQQHHK 176
>gi|1684845|gb|AAB48303.1| (U77716) pinin [Canis familiaris]
Length = 773
Frame 2 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | | | 773
0 150 300 450 600 750
Plus Strand HSPs:
Score = 92 (32.4 bits), Expect = 2.1, P = 0.88
Identities = 41/171 (23%), Positives = 73/171 (42%), Frame = +2
Query: 62 IFPSPSSSSTLPFPKPQGH*VLRMSPA-SRSKSKDRKANKDAQKASAKPTGSSNAVAGVP 238
I S S + T + +G + S + SRS S ++ +S + S ++ +
Sbjct: 603 IVHSDSKTKTKTRSRSRGRARNKTSKSRSRSSSSSSSSSSSTSSSSGGSSSSGSSSSRSS 662
Query: 239 ASAYNPLLGTFHTLDMSPAPTSPIHSNGRFR----NIDETDEHPVNSL---VAGVEYDSV 397
+S+ + G+ D S + TS S R R N D V+ +G+E
Sbjct: 663 SSSSSSTSGSSRR-DSSSSTTSSSESRSRSRGRGHNRDRKHRRSVDRKRRDTSGLERSHK 721
Query: 398 SNNGSWSGESEEHKDKSSNVPVRPESVPGADNDKREKIRQKNERKHQRQKERR 556
S+ G S +++ KDK+S R S+ + + R + +RK R+ +RR
Sbjct: 722 SSKGGSSRDTKGSKDKNSRSD-RKRSISESSRSGKRSSRSERDRKSDRKDKRR 773
>gi|11320891|gb|AAG33941.1|AF195139_1 (AF195139) pinin [Homo sapiens]
Length = 717
Frame 2 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | | | 717
0 150 300 450 600
Plus Strand HSPs:
Score = 90 (31.7 bits), Expect = 3.3, P = 0.96
Identities = 33/143 (23%), Positives = 61/143 (42%), Frame = +2
Query: 143 SRSKSKDRKANKDAQKASAKPTGSSNAVAGVPASAYNPLLGTFH---TLDMSPAPTSPIH 313
SRS S ++ +S + S ++ + +S+ + G+ + S + S
Sbjct: 575 SRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSSTSGSSSRDSSSSTSSSSESRSR 634
Query: 314 SNGRFRNIDETDEHPVNSL---VAGVEYDSVSNNGSWSGESEEHKDKSSNVPVRPESVPG 484
S GR N D V+ +G+E S+ G S +++ KDK+S R S+
Sbjct: 635 SRGRGHNRDRKHRRSVDRKRRDTSGLERSPKSSKGGSSRDTKGSKDKNSRSD-RKRSISE 693
Query: 485 ADNDKREKIRQKNERKHQRQKERR 556
+ + R + +RK R+ +RR
Sbjct: 694 SSRSGKRSSRSERDRKSDRKDKRR 717
>gi|12738286 ref|XP_012322.1| pinin, desmosome associated protein [Homo
sapiens]
Length = 727
Frame 2 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | | | 727
0 150 300 450 600
Plus Strand HSPs:
Score = 90 (31.7 bits), Expect = 3.3, P = 0.96
Identities = 33/143 (23%), Positives = 61/143 (42%), Frame = +2
Query: 143 SRSKSKDRKANKDAQKASAKPTGSSNAVAGVPASAYNPLLGTFH---TLDMSPAPTSPIH 313
SRS S ++ +S + S ++ + +S+ + G+ + S + S
Sbjct: 585 SRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSSTSGSSSRDSSSSTSSSSESRSR 644
Query: 314 SNGRFRNIDETDEHPVNSL---VAGVEYDSVSNNGSWSGESEEHKDKSSNVPVRPESVPG 484
S GR N D V+ +G+E S+ G S +++ KDK+S R S+
Sbjct: 645 SRGRGHNRDRKHRRSVDRKRRDTSGLERSHKSSKGGSSRDTKGSKDKNSRSD-RKRSISE 703
Query: 485 ADNDKREKIRQKNERKHQRQKERR 556
+ + R + +RK R+ +RR
Sbjct: 704 SSRSGKRSSRSERDRKSDRKDKRR 727
>gi|134525|sp|P07217|SLIB_SHEEP SOMATOLIBERIN (GROWTH HORMONE-RELEASING FACTOR)
(GRF) (GROWTH HORMONE-RELEASING HORMONE) (GHRH)
Length = 44
Frame 3 hits (HSPs): ___________________________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 44
0 20 40
__________________
Annotated Domains:
BLOCKS BL00260: Glucagon / GIP / secretin / VIP 1..27
Entrez amidation site 44
PFAM hormone2: Peptide hormone 1..28
PRINTS GLUCAGON1: Glucagon motif I - 2 1..11
PRINTS GLUCAGON2: Glucagon motif II - 2 12..23
PRODOM PD007918: SLIB(7) P97567(1) 1..43
PROSITE GLUCAGON: Glucagon / GIP / secretin / VI 1..23
__________________
Plus Strand HSPs:
Score = 65 (22.9 bits), Expect = 3.4, P = 0.97
Identities = 17/41 (41%), Positives = 27/41 (65%), Frame = +3
Query: 471 NQYRELIMTSGRKSARRMRENINGRRKGEHRNCMSGALVTL 593
N YR+++ G+ SAR++ ++I R++GE RN GA V L
Sbjct: 8 NSYRKIL---GQLSARKLLQDIMNRQQGE-RNQEQGAKVRL 44
>gi|4505923 ref|NP_002678.1| pinin, desmosome associated protein [Homo sapiens]
>gi|1684847|gb|AAB48304.1| (U77718) pinin [Homo sapiens]
Length = 743
Frame 2 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | | | 743
0 150 300 450 600
Plus Strand HSPs:
Score = 90 (31.7 bits), Expect = 3.4, P = 0.97
Identities = 33/143 (23%), Positives = 61/143 (42%), Frame = +2
Query: 143 SRSKSKDRKANKDAQKASAKPTGSSNAVAGVPASAYNPLLGTFH---TLDMSPAPTSPIH 313
SRS S ++ +S + S ++ + +S+ + G+ + S + S
Sbjct: 601 SRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSSTSGSSSRDSSSSTSSSSESRSR 660
Query: 314 SNGRFRNIDETDEHPVNSL---VAGVEYDSVSNNGSWSGESEEHKDKSSNVPVRPESVPG 484
S GR N D V+ +G+E S+ G S +++ KDK+S R S+
Sbjct: 661 SRGRGHNRDRKHRRSVDRKRRDTSGLERSHKSSKGGSSRDTKGSKDKNSRSD-RKRSISE 719
Query: 485 ADNDKREKIRQKNERKHQRQKERR 556
+ + R + +RK R+ +RR
Sbjct: 720 SSRSGKRSSRSERDRKSDRKDKRR 743
>gi|7303571|gb|AAF58624.1| (AE003825) CG13194 gene product [Drosophila
melanogaster]
Length = 561
Frame 2 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | | 561
0 150 300 450
Plus Strand HSPs:
Score = 88 (31.0 bits), Expect = 4.1, P = 0.98
Identities = 33/119 (27%), Positives = 59/119 (49%), Frame = +2
Query: 206 TGSSNAVAGVPASAYNPLLGTFHTLDMSPAPTSPIHSNGRFRNI-DETDEHPVNSLVAGV 382
T ++ PAS P+ T T S PTS I+SN NI D+ H NSL +
Sbjct: 136 TTTTTTTTTTPAS---PVAVTKRTRSKSRRPTS-INSNSSNSNIPDKISRHNSNSLKS-- 189
Query: 383 EYDSVSNNGSWSGESEEHKDKSSNVPVRPESVPGADNDK---REKIRQKNERKHQRQKER 553
Y+ ++N + + + + ++ + ++ + V N K R +++QK + +Q++R
Sbjct: 190 -YNQANSNNN-NNNNNNNSSNNNELDLQQQQVILQRNRKLHRRHRLQQKKRQLQLQQQQR 247
Query: 554 RAQ 562
R Q
Sbjct: 248 RRQ 250
>gi|134523|sp|P01287|SLIB_PIG SOMATOLIBERIN (GROWTH HORMONE-RELEASING FACTOR)
(GRF) (GROWTH HORMONE-RELEASING HORMONE) (GHRH) >gi|69267|pir||RHPG
somatoliberin - pig
Length = 44
Frame 3 hits (HSPs): ___________________________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 44
0 20 40
__________________
Annotated Domains:
Entrez amidation site 44
PFAM hormone2: Peptide hormone 1..28
PRINTS GLUCAGON1: Glucagon motif I - 2 1..11
PRINTS GLUCAGON2: Glucagon motif II - 2 12..23
PRODOM PD007918: SLIB(7) P97567(1) 1..43
PROSITE GLUCAGON: Glucagon / GIP / secretin / VI 1..23
__________________
Plus Strand HSPs:
Score = 64 (22.5 bits), Expect = 4.4, P = 0.99
Identities = 17/41 (41%), Positives = 27/41 (65%), Frame = +3
Query: 471 NQYRELIMTSGRKSARRMRENINGRRKGEHRNCMSGALVTL 593
N YR+++ G+ SAR++ ++I R++GE RN GA V L
Sbjct: 8 NSYRKVL---GQLSARKLLQDIMSRQQGE-RNQEQGARVRL 44
>gi|69268|pir||RHBOS somatoliberin - bovine
Length = 44
Frame 3 hits (HSPs): ___________________________________________
Annotated Domains: __________________________ __
__________________________________________________
Database sequence: | | | | 44
0 20 40
__________________
Annotated Domains:
Entrez modified site: amidated carboxyl end (Le 44
PROSITE GLUCAGON: Glucagon / GIP / secretin / VI 1..23
__________________
Plus Strand HSPs:
Score = 64 (22.5 bits), Expect = 4.4, P = 0.99
Identities = 17/41 (41%), Positives = 27/41 (65%), Frame = +3
Query: 471 NQYRELIMTSGRKSARRMRENINGRRKGEHRNCMSGALVTL 593
N YR+++ G+ SAR++ ++I R++GE RN GA V L
Sbjct: 8 NSYRKVL---GQLSARKLLQDIMNRQQGE-RNQEQGAKVRL 44
>gi|10639530|emb|CAC11502.1| (AL445064) probable 50S ribosomal protein L12
[Thermoplasma acidophilum]
Length = 106
Frame 2 hits (HSPs): ______________________________________
__________________________________________________
Database sequence: | | | | | | | 106
0 20 40 60 80 100
Plus Strand HSPs:
Score = 72 (25.3 bits), Expect = 4.6, P = 0.99
Identities = 22/81 (27%), Positives = 39/81 (48%), Frame = +2
Query: 341 ETDEHPVNSLV--AGVEYDSVSNNGSWSGESEEHKD---KSSNVP-VRPESVPGADNDKR 502
E DE + ++ GV+ D SG + + D K+++V V P A+ K+
Sbjct: 16 EVDEEKLKKVLEDVGVQVDEARLKTLVSGLKDVNIDEVLKNASVAQVATAPAPAAEEKKK 75
Query: 503 EKIRQKNERKHQRQKERRAQE 565
E+ ++K E+K + KE +E
Sbjct: 76 EEPKKKEEKKKEEDKEHEEEE 96
>gi|7512711|pir||T12483 hypothetical protein DKFZp564B0769.1 - human (fragment)
>gi|5262665|emb|CAB45767.1| (AL080186) hypothetical protein [Homo
sapiens]
Length = 299
Frame 2 hits (HSPs): ____ _________
__________________________________________________
Database sequence: | | | | | | | 299
0 50 100 150 200 250
Plus Strand HSPs:
Score = 75 (26.4 bits), Expect = 4.7, Sum P(2) = 0.99
Identities = 15/53 (28%), Positives = 32/53 (60%), Frame = +2
Query: 407 GSWSGESEEHKDKSSNVPVRPESVPGADNDKREKIRQKNERKHQRQKERRAQE 565
G+ SG S +HK ++ + E D D+++K +++ ER+ ++KE++ +E
Sbjct: 141 GNLSGNSHKHKGEAKERERKKERSRSIDKDRKKKDKER-EREQDKRKEKQKRE 192
Score = 45 (15.8 bits), Expect = 4.7, Sum P(2) = 0.99
Identities = 8/18 (44%), Positives = 14/18 (77%), Frame = +2
Query: 143 SRSKSKDRKANKDAQKAS 196
SRS+S+DR+ N+ ++ S
Sbjct: 113 SRSRSRDRRTNRASRSRS 130
>gi|7493929|pir||JW0067 chitinase (EC 3.2.1.14) A - Emericella nidulans
Length = 660
Frame 2 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | | | 660
0 150 300 450 600
Plus Strand HSPs:
Score = 88 (31.0 bits), Expect = 5.0, P = 0.99
Identities = 42/138 (30%), Positives = 55/138 (39%), Frame = +2
Query: 68 PSPSSSSTL----PFPKPQGH*VLRMSPASRSKSKDRKANKDAQKASAKPTGSSNAVAGV 235
PS +SSST P PKP S S S + + PT SS
Sbjct: 408 PSTASSSTTETVTPSPKPSPSESSTTSETSSLPSTSTPVVSETPSETKTPTSSS----AP 463
Query: 236 PASAYNPLLGTFHTLDMSPAPTSPIHSNGRFRNIDETDEHPVNSLVAGVEYDSVSNNGSW 415
P S+ +P+ G+ T S + S S R + ET H S +G E S
Sbjct: 464 PLSSSSPVGGSSSTASSSTSTPSETPSTSSTRAVSETSTHISTSTSSGPET-------SL 516
Query: 416 SGESEEHKDKSSNVP---VRPESVP 481
+G S SS+VP + P S P
Sbjct: 517 TGSSTSVPATSSSVPSSAISPSSTP 541
>gi|10178219|dbj|BAB11612.1| (AB018117) DNA-binding protein-like [Arabidopsis
thaliana]
Length = 889
Frame 2 hits (HSPs): ______ ______
__________________________________________________
Database sequence: | | | | | | | 889
0 150 300 450 600 750
Plus Strand HSPs:
Score = 79 (27.8 bits), Expect = 5.7, Sum P(2) = 1.0
Identities = 23/96 (23%), Positives = 42/96 (43%), Frame = +2
Query: 293 APTSPIHSNGRFRNIDE--TDEHPVNSLVAGVEYDSVSNNGSWSGESEEHKDKSSNVPVR 466
AP PIH R R ++ + EHP DS + + E + +D+ +
Sbjct: 665 APPPPIHDYDRRRRPEKRLSPEHPPTRKNISPSRDSKRKSERYPDERDRQRDRERSRHQD 724
Query: 467 PESVPGADNDKREKIRQKNERKHQRQKERRAQELHER 577
+ D+R++ R ++ R H+ + ER +Q H +
Sbjct: 725 VDREHDRTRDRRDEDRSRDHRHHRGETER-SQHHHRK 760
Score = 51 (18.0 bits), Expect = 5.7, Sum P(2) = 1.0
Identities = 22/92 (23%), Positives = 39/92 (42%), Frame = +2
Query: 62 IFPSPSSSSTLPFPKP-------QGH*VLRMSPASRSKSKDRKANKDAQKASAKPTGSSN 220
I +P +S+ + KP QG +++ + S+ ++ K Q A+ +P G
Sbjct: 417 ITSAPRASAEVNVEKPVDACESTQGSVIVKEATVSKLNTQAPKEEMQQQVAAGEPAGKKK 476
Query: 221 AVAG-VPAS--AYNP---LLGTFHTLDMSPAP 298
VP + +NP L G + + M P P
Sbjct: 477 KKKPRVPGNDMQWNPVPDLAGPDYMMQMGPGP 508
>gi|11611205|emb|CAC18592.1| (AJ278419) hypothetical protein [Streptococcus
pneumoniae]
Length = 66
Frame -1 hits (HSPs): _________________________
__________________________________________________
Database sequence: | | | | | 66
0 20 40 60
Minus Strand HSPs:
Score = 63 (22.2 bits), Expect = 5.7, P = 1.0
Identities = 10/33 (30%), Positives = 18/33 (54%), Frame = -1
Query: 247 CTGWNTSYSITRSCRLCRSLLSILVSLSVFRLG 149
C+ W +S T C LC ++L +++ F +G
Sbjct: 4 CSNWCCGWSYTWRCSLCSNMLVVIMDFKSFIIG 36
>gi|7290804|gb|AAF46248.1| (AE003440) CG1677 gene product [Drosophila
melanogaster]
Length = 1081
Frame 2 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | | | | | | 1081
0 150 300 450 600 750 900 1050
Plus Strand HSPs:
Score = 89 (31.3 bits), Expect = 6.8, P = 1.0
Identities = 39/166 (23%), Positives = 69/166 (41%), Frame = +2
Query: 71 SPSSS-STLPFPKPQGH*VLRMSPASRSKSKDRKANKDAQKASAKPTGSSNAVAGVPASA 247
SPSS L P P+ LR +S S D ++ + S + SS++ +G +
Sbjct: 902 SPSSKRKKLSSPAPKKFDKLRRRRSSSSSDSD--SSDTSYSDSESGSSSSDSSSGSRETP 959
Query: 248 YNPLLGTFHTLDMSPAPTSPIHSNGRFRNIDETDEHPVNSLVAGVEYDSVSNNGSWSGES 427
+ T L+ + P + + R+ + +++V S SN S +S
Sbjct: 960 QKRVRATDKALNERKLISKPAEQSTKKRSPISIEIKKTSNMVGVSALASASN----SADS 1015
Query: 428 EEHKDKSSNVPVRPESVPGADNDKREKIRQKNERKHQRQKERRAQEL 568
+ KD + + V D D +EK + K+ K + K+ R +EL
Sbjct: 1016 DAEKDHDNGKDKEKDHVKEKDKDCKEKDKDKDGMKDKEGKKSRREEL 1062
>gi|4914584|emb|CAB43681.1| (AL050382) hypothetical protein [Homo sapiens]
Length = 189
Frame 2 hits (HSPs): _____________ _______________
__________________________________________________
Database sequence: | | | | | 189
0 50 100 150
Plus Strand HSPs:
Score = 59 (20.8 bits), Expect = 7.0, Sum P(2) = 1.0
Identities = 11/55 (20%), Positives = 26/55 (47%), Frame = +2
Query: 422 ESEEHKDKSSNVPVRPESVPGADNDKREKIRQKNERKHQRQKERRAQELHERCTG 586
+ E + K + E A+ ++ ++ ++ R+H R+++R + ER G
Sbjct: 94 KEREKRRKEQEEEEQKEREKEAERERNRQLEREKRREHSRERDRERERERERDRG 148
Score = 56 (19.7 bits), Expect = 7.0, Sum P(2) = 1.0
Identities = 14/45 (31%), Positives = 21/45 (46%), Frame = +2
Query: 125 LRMSPASRSKSKDRKANKDAQKASAKPTGSSNAVAGVPASAYNPL 259
+R P SRS+S+DR+ + A+ K A PA + L
Sbjct: 18 VREGPRSRSRSRDRRRKERAKSKEKKSEKKEKAQEEPPAKLLDDL 62
>gi|9622185|gb|AAF89661.1|AF168782_1 (AF168782) acinusL protein [Mus musculus]
Length = 1338
Frame 2 hits (HSPs): _____ ___ ___
__________________________________________________
Database sequence: | | | | 1338
0 500 1000
Plus Strand HSPs:
Score = 77 (27.1 bits), Expect = 7.1, Sum P(2) = 1.0
Identities = 35/123 (28%), Positives = 55/123 (44%), Frame = +2
Query: 92 LPFPKP-QGH*VLRMSPASRSKSKDRKANKDAQKASAKPTGSSNAVAGVPASAYNPLLGT 268
L P+P Q H + R+ P + K +A + A+ +P S ++ +P S T
Sbjct: 709 LSHPEPEQQHVIQRLQP-EQGIPKKCEAEEAEPPAATQPQTSETQISHLPESER-----T 762
Query: 269 FHTLDMSPAPTSPIHSNGRFRNIDETDEHPVNSLVAGVEYDSVSNNGSWSGESEEHKDKS 448
HT++ T N R +E E P+ VA D VSN+ G +EE + K
Sbjct: 763 HHTVEEKEEVTMDTSEN---RPENEVPEPPLP--VA----DQVSNDERPEGGAEEEEKKE 813
Query: 449 SNVP 460
S++P
Sbjct: 814 SSMP 817
Score = 56 (19.7 bits), Expect = 7.1, Sum P(2) = 1.0
Identities = 12/40 (30%), Positives = 23/40 (57%), Frame = +2
Query: 458 PVRPESVPGADNDKREKIRQKNERKHQRQKERRAQELHER 577
PV+P P A+ ++E+ ++ + +R+ ERR + ER
Sbjct: 1123 PVQPPPHPRAEQREQERAVREQWAEREREMERRERTRSER 1162
Score = 55 (19.4 bits), Expect = 9.0, Sum P(2) = 1.0
Identities = 15/54 (27%), Positives = 29/54 (53%), Frame = +2
Query: 422 ESEEHKDKSSNVPVRPESVPGADNDKREKIRQKNERKHQRQKER-RAQELHERCT 583
E+E +++ R E + D RE+ R + +R+ +R+++R R +E R T
Sbjct: 1265 EAERERNRQLEREKRREHSRERERD-RERERDRGDRERERERDRDRGRERDRRDT 1318
>gi|3980411|gb|AAC95214.1| (AC004561) putative proline-rich protein
[Arabidopsis thaliana]
Length = 891
Frame 2 hits (HSPs): ____ _______
__________________________________________________
Database sequence: | | | | | | | 891
0 150 300 450 600 750
Plus Strand HSPs:
Score = 76 (26.8 bits), Expect = 7.8, Sum P(2) = 1.0
Identities = 28/111 (25%), Positives = 51/111 (45%), Frame = +2
Query: 272 HTLDMSPAPTSPIHS---NGRFRNIDETDEHPVNSLVAGVEYDSVSNNGSWSGESEEHKD 442
H MSP S S + + ++ ++ ++ + L A + DS + K+
Sbjct: 720 HGSQMSPVENSEGRSRPVSSKVKDSEQVEKEDNSDLDANLSCDSKDTIRHQIKDKNRRKN 779
Query: 443 K-SSNVPVRPESVPGADND----KREKIRQKNERKHQRQ-KERRAQELHER 577
K SS V + +D+D K K R+K E+K +++ K+RR +E H +
Sbjct: 780 KRSSREEVSSDDNGSSDSDVDDRKEAKRRRKEEKKTRKEEKKRRREERHRK 830
Score = 53 (18.7 bits), Expect = 7.8, Sum P(2) = 1.0
Identities = 18/51 (35%), Positives = 24/51 (47%), Frame = +2
Query: 71 SPSSSSTLPF----PKPQG--H*VLRMSPASRSKSKDRKANKDAQKASAKP 205
SPS S + P P P+G H R SP S+ +DR N K ++ P
Sbjct: 629 SPSRSRSPPVLHRSPSPRGRKHQRERRSPGRLSEEQDRVQNSKLLKRTSVP 679
>gi|9843651|emb|CAC03679.1| (AJ292982) SRM102 [Arabidopsis thaliana]
Length = 894
Frame 2 hits (HSPs): ____ _______
__________________________________________________
Database sequence: | | | | | | | 894
0 150 300 450 600 750
Plus Strand HSPs:
Score = 76 (26.8 bits), Expect = 7.9, Sum P(2) = 1.0
Identities = 28/111 (25%), Positives = 51/111 (45%), Frame = +2
Query: 272 HTLDMSPAPTSPIHS---NGRFRNIDETDEHPVNSLVAGVEYDSVSNNGSWSGESEEHKD 442
H MSP S S + + ++ ++ ++ + L A + DS + K+
Sbjct: 723 HGSQMSPVENSEGRSRPVSSKVKDSEQVEKEDNSDLDANLSCDSKDTIRHQIKDKNRRKN 782
Query: 443 K-SSNVPVRPESVPGADND----KREKIRQKNERKHQRQ-KERRAQELHER 577
K SS V + +D+D K K R+K E+K +++ K+RR +E H +
Sbjct: 783 KRSSREEVSSDDNGSSDSDVDDRKEAKRRRKEEKKTRKEEKKRRREERHRK 833
Score = 53 (18.7 bits), Expect = 7.9, Sum P(2) = 1.0
Identities = 18/51 (35%), Positives = 24/51 (47%), Frame = +2
Query: 71 SPSSSSTLPF----PKPQG--H*VLRMSPASRSKSKDRKANKDAQKASAKP 205
SPS S + P P P+G H R SP S+ +DR N K ++ P
Sbjct: 632 SPSRSRSPPVLHRSPSPRGRKHQRERRSPGRLSEEQDRVQNSKLLKRTSVP 682
>gi|12643592|sp||HUNB_DROMU_1 [Segment 1 of 2] HUNCHBACK PROTEIN
>gi|2896871|gb|AAC03262.1| (U93015) hunchback protein [Drosophila
mulleri]
Length = 93
Frame 2 hits (HSPs): __________________________________________
__________________________________________________
Database sequence: | | | | | | 93
0 20 40 60 80
Plus Strand HSPs:
Score = 66 (23.2 bits), Expect = 8.0, P = 1.0
Identities = 15/76 (19%), Positives = 42/76 (55%), Frame = +2
Query: 374 AGVEYDSVSNNGSWSGESEEHKDKSSNVPVRPESVPGADNDKREKIRQ--KNERKHQRQK 547
A ++ + +S++ + ++ +H + +S+ R +P + N ++ Q K +++HQ+ +
Sbjct: 8 ANIKQEPMSHHHNHHHDNGQHSNSNSDGSPRQSPLP-SPNAPATQLEQYLKQQQQHQQHQ 66
Query: 548 ERRAQELHERCTGYLMS 598
+ + Q+ +RC M+
Sbjct: 67 QHQHQQPMDRCCAAAMT 83
>gi|11359516|pir||T51074 hypothetical protein B2A19.80 [imported] - Neurospora
crassa >gi|9368578|emb|CAB98238.1| (AL390092) hypothetical protein
[Neurospora crassa]
Length = 219
Frame 2 hits (HSPs): __________________________
__________________________________________________
Database sequence: | | | | | | 219
0 50 100 150 200
Plus Strand HSPs:
Score = 80 (28.2 bits), Expect = 8.0, P = 1.0
Identities = 29/113 (25%), Positives = 47/113 (41%), Frame = +2
Query: 74 PSSSSTLPFPKPQGH*VLRMSPASRSKSKDRKANKDAQKASAKP-TGSSNAVAGVPASAY 250
PS ST P P +S S+ +K + A P TG S++ + +P S
Sbjct: 21 PSQISTKRVPVPPVPITQTLSSRLFHTSRAQKKMDTTSTSKADPATGCSSSTSPIPGSTS 80
Query: 251 NPLLGTFHTLDMSPAPTSPIHSNGRFRNIDETDEHPVNSLVAGVEYDSVSNNGS 412
+ + H T+P H +F + TD+ + L VE+ + NNG+
Sbjct: 81 STSTSSTHPTASVADTTTPPHRPTQFGPEEVTDDPLADPL--SVEHQKLENNGN 132
>gi|135063|sp|P22293|SUS_DROME SUPPRESSOR OF SABLE PROTEIN
>gi|103415|pir||A39612 suppressor of sable protein - fruit fly
(Drosophila melanogaster) >gi|158517|gb|AAA28920.1| (M57889) su(s)
protein [Drosophila melanogaster]
Length = 1322
Frame 2 hits (HSPs): _______
Annotated Domains: _______________________________________________
__________________________________________________
Database sequence: | | | | 1322
0 500 1000
__________________
Annotated Domains:
Entrez Domain: HIGHLY CHARGED DOMAIN. 138..327
Entrez Domain: GLN-RICH (OPA-REPEAT). 446..474
Entrez Domain: RNA-BINDING (BY SIMILARITY). 1087..1162
PRODOM PD031510: O77427(1) SUS(1) Q24707(1) 45..135
PRODOM PD077280: O77427(1) SUS(1) 137..198
PRODOM PD085530: O77427(1) SUS(1) 246..327
PRODOM PD032978: O77427(1) SUS(1) Q24707(1) 329..436
PRODOM PD001830: HSP1(29) VE2(21) GAG(12) 446..473
PRODOM PD143360: O77427(1) SUS(1) 475..533
PRODOM PD018363: O77427(2) SUS(2) Q24707(2) 535..784
PRODOM PD018363: O77427(2) SUS(2) Q24707(2) 798..1008
PRODOM PD143359: O77427(1) SUS(1) 1010..1052
PRODOM PD030543: O77427(1) SUS(1) Q24707(1) 1054..1143
PRODOM PD029968: O77427(1) SUS(1) Q24707(1) 1169..1268
__________________
Plus Strand HSPs:
Score = 89 (31.3 bits), Expect = 8.6, P = 1.0
Identities = 39/149 (26%), Positives = 71/149 (47%), Frame = +2
Query: 146 RSKSKDRKANKDAQKASAKPTGSSNAVAGVPASAYNPLLGTFHTLDM---SPAP---TSP 307
R K ++R+ KD ++ + + N V+ VP + + + +++ SP P P
Sbjct: 155 RKKEREREQKKDKEQQN-RSRRDENDVSVVPGGVED--MDEYEMMNVRGGSPPPGGAAPP 211
Query: 308 IHSNG-RFRNID-ETDEHPVNSLVAGVEYDSVSNNGSWSGES--EEHKDKSSNVPVRPES 475
+ S G RF D + D+ + AG+ G ++ S + + D+ +N P
Sbjct: 212 LSSCGQRFSGADWDMDDGSAATGAAGL---GAGGGGGYNSHSSYDSYSDEETNGP----- 263
Query: 476 VPGADNDKREKIRQKNERKHQRQKERRAQELHERCTGYL 592
G N +R + R+ NE++HQR R + +R G L
Sbjct: 264 --GLMNQRR-RTRRDNEKEHQRGVNNRKRRDRDRLEGGL 299
>gi|7511890|pir||T13386 hypothetical protein 115C2.3 - fruit fly (Drosophila
melanogaster) >gi|3645983|emb|CAA20886.1| (AL031581) EG:115C2.3
[Drosophila melanogaster] >gi|7290068|gb|AAF45534.1| (AE003418)
su(s) gene product [Drosophila melanogaster]
Length = 1325
Frame 2 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | 1325
0 500 1000
Plus Strand HSPs:
Score = 89 (31.3 bits), Expect = 8.6, P = 1.0
Identities = 39/149 (26%), Positives = 71/149 (47%), Frame = +2
Query: 146 RSKSKDRKANKDAQKASAKPTGSSNAVAGVPASAYNPLLGTFHTLDM---SPAP---TSP 307
R K ++R+ KD ++ + + N V+ VP + + + +++ SP P P
Sbjct: 155 RKKEREREQKKDKEQQN-RSRRDENDVSVVPGGVED--MDEYEMMNVRGGSPPPGGAAPP 211
Query: 308 IHSNG-RFRNID-ETDEHPVNSLVAGVEYDSVSNNGSWSGES--EEHKDKSSNVPVRPES 475
+ S G RF D + D+ + AG+ G ++ S + + D+ +N P
Sbjct: 212 LSSCGQRFSGADWDMDDGSAATGAAGL---GAGGGGGYNSHSSYDSYSDEETNGP----- 263
Query: 476 VPGADNDKREKIRQKNERKHQRQKERRAQELHERCTGYL 592
G N +R + R+ NE++HQR R + +R G L
Sbjct: 264 --GLMNQRR-RTRRDNEKEHQRGVNNRKRRDRDRLEGGL 299
>gi|139636|sp|P18709|VTA2_XENLA VITELLOGENIN A2 PRECURSOR (VTG A2) [CONTAINS:
LIPOVITELLIN I; LIPOVITELLIN II; PHOSVITIN; PHOSVETTE I; PHOSVETTE
II] >gi|85867|pir||S03124 vitellogenin A2 precursor - African
clawed frog >gi|214878|gb|AAA49982.1| (M18061) vitellogenin
[Xenopus laevis] >gi|4388696|emb|CAA68433.1| (Y00354) vitellogenin
A2 precursor [Xenopus laevis]
Length = 1807
Frame 2 hits (HSPs): ____
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 1807
0 500 1000 1500
__________________
Annotated Domains:
DOMO DM05072: VITELLOGENIN 2..1800
Entrez Domain: SER-RICH. 1126..1321
Entrez Domain: POLY-SER. 1126..1163
Entrez Domain: POLY-SER. 1179..1184
Entrez Domain: POLY-SER. 1205..1232
Entrez Domain: POLY-SER. 1263..1275
Entrez Domain: POLY-SER. 1309..1321
Entrez glycosylation site: POTENTIAL. 1094
PFAM Vitellogenin_N: Lipoprotein amino termin 24..594
PFAM vwd: von Willebrand factor type D domain 1538..1694
PRODOM PD002583: VIT(5) VIT1(5) VIT6(3) 16..1083
PRODOM PD148821: VTA2_XENLA 1085..1120
PRODOM PD001830: HSP1(29) VE2(21) GAG(12) 1122..1380
PRODOM PD009788: VIT2(2) VIT1(2) VIT(2) 1384..1534
PRODOM PD001080: VWF(8) HMCT(4) MUC2(4) 1538..1752
PRODOM PD009787: VIT2(2) VIT1(2) Q9YGK0(1) 1754..1805
__________________
Plus Strand HSPs:
Score = 90 (31.7 bits), Expect = 9.3, P = 1.0
Identities = 36/143 (25%), Positives = 63/143 (44%), Frame = +2
Query: 125 LRMSPASRSKSKDRKANKDAQKASAKPTGSSNAVAGVPASA--YNPLLGTFHTLDMSPAP 298
L S +S S S ++ + +S+ P+ SS++ + +NP H + S
Sbjct: 1128 LSSSSSSSSSSSSSSSSSSSSSSSSSPSSSSSSSYSKRSKRREHNP----HHQRESS--- 1180
Query: 299 TSPIHSNGRFRNIDETDEHPVNSLVAGVEYDSVSNNGSWSGESEEHKDKSSNVPVRPESV 478
+S + RN+ E +H + + S S++ S S S SS+ RP
Sbjct: 1181 SSSSQEQNKKRNLQENRKHGQKGMSSSSSSSSSSSSSSSSSSSSSSSSSSSSEENRPHKN 1240
Query: 479 PGADNDKREKIRQKNERKHQRQKER 553
DN K+ K+ Q N+ HQ++K +
Sbjct: 1241 RQHDN-KQAKM-QSNQ--HQQKKNK 1261
>gi|10176898|dbj|BAB10130.1| (AB011478) emb|CAB41546.1|~gene_id:MKD10.4~similar
to unknown protein [Arabidopsis thaliana]
Length = 342
Frame 2 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | 342
0 150 300
Plus Strand HSPs:
Score = 82 (28.9 bits), Expect = 10., P = 1.0
Identities = 21/76 (27%), Positives = 42/76 (55%), Frame = +2
Query: 341 ETDEHPVNSLVA-GVEYDSVSNNGSWSGESEEHKDKSSNVPVRPESVPGADNDKREKIRQ 517
++ E P + G E S +G SG+ ++ K+K NV + S P + EK+++
Sbjct: 54 KSSEKPNRKKIQKGKEIKSSPADGKLSGKMKKRKEKVGNVDI---SEPILEAISTEKVKE 110
Query: 518 KNERKHQRQKERRAQEL 568
K + ++ +K+R+A+E+
Sbjct: 111 KKGKMNKTKKKRKAEEI 127
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.97
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.345 0.150 0.483
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.316 0.131 0.384 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.376 0.168 0.718
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.361 0.159 0.591
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.339 0.150 0.503
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.364 0.162 0.617
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 207 206 10. 77 3 12 22 0.097 35
31 0.11 38
+2 0 208 207 10. 77 3 12 22 0.098 35
31 0.11 38
+1 0 208 207 10. 77 3 12 22 0.098 35
31 0.11 38
-1 0 208 207 10. 77 3 12 22 0.098 35
31 0.11 38
-2 0 208 207 10. 77 3 12 22 0.098 35
31 0.11 38
-3 0 207 207 10. 77 3 12 22 0.098 35
31 0.11 38
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 35
No. of states in DFA: 595 (59 KB)
Total size of DFA: 223 KB (256 KB)
Time to generate neighborhood: 0.02u 0.00s 0.02t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 215.29u 1.07s 216.36t Elapsed: 00:01:14
Total cpu time: 215.34u 1.10s 216.44t Elapsed: 00:01:15
Start: Mon Feb 4 11:50:28 2002 End: Mon Feb 4 11:51:43 2002
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000