R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
>gi|6630689|dbj|BAA88535.1| (AP000969) ESTs D39011(R0609), AU032023(R3215)
correspond to a region of the predicted gene.~Similar to 26S
proteasome, non-ATPase subunit. (Y13071) [Oryza sativa]
Length = 307
Frame 3 hits (HSPs): ____
Frame 2 hits (HSPs): ___________
Frame 1 hits (HSPs): ______________ _____
__________________________________________________
Database sequence: | | | | | | | | 307
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 412 (145.0 bits), Expect = 3.9e-54, Sum P(3) = 3.9e-54
Identities = 78/82 (95%), Positives = 80/82 (97%), Frame = +1
Query: 1 VDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNXHYYSIA 180
+DPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSN+GHLNKPSIQALIHGLN HYYSIA
Sbjct: 143 IDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNVGHLNKPSIQALIHGLNRHYYSIA 202
Query: 181 INYRKNELEEXMLLNLHKKKWT 246
INYRKNELEE MLLNLHKKKWT
Sbjct: 203 INYRKNELEEKMLLNLHKKKWT 224
Score = 145 (51.0 bits), Expect = 1.9e-23, Sum P(3) = 1.9e-23
Identities = 33/57 (57%), Positives = 38/57 (66%), Frame = +2
Query: 185 ITERMN-LKRXCCLTFTKRSGPDGLTLRHFDSXSKTNEQTVQEMLSLAAKYNKAXQE 352
I R N L+ L K+ DGL L+ FD+ SKTNEQTVQEML+LA KYNKA QE
Sbjct: 203 INYRKNELEEKMLLNLHKKKWTDGLILKSFDTHSKTNEQTVQEMLNLAIKYNKAVQE 259
Score = 116 (40.8 bits), Expect = 3.9e-54, Sum P(3) = 3.9e-54
Identities = 24/28 (85%), Positives = 24/28 (85%), Frame = +1
Query: 415 KHLEXHVSNLMSSTIVQTLGMMLDXVVF 498
KHLE HVSNLMSS IVQTLG MLD VVF
Sbjct: 280 KHLEEHVSNLMSSNIVQTLGTMLDTVVF 307
Score = 70 (24.6 bits), Expect = 3.9e-54, Sum P(3) = 3.9e-54
Identities = 15/18 (83%), Positives = 15/18 (83%), Frame = +3
Query: 363 LPPEKLAIAXVGRQXAXK 416
LPPEKLAIA VGRQ A K
Sbjct: 263 LPPEKLAIANVGRQDAKK 280
>gi|8809705|dbj|BAA97246.1| (AB025633) 26S proteasome, non-ATPase regulatory
subunit [Arabidopsis thaliana]
Length = 308
Frame 3 hits (HSPs): ____
Frame 2 hits (HSPs): ___________
Frame 1 hits (HSPs): ___________________________
__________________________________________________
Database sequence: | | | | | | | | 308
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 490 (172.5 bits), Expect = 8.9e-46, P = 8.9e-46
Identities = 114/166 (68%), Positives = 122/166 (73%), Frame = +1
Query: 1 VDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNXHYYSIA 180
VDPIQSVKGKVVIDAFR INPQT+MLGQEPRQTTSNLGHLNKPSIQALIHGLN HYYSIA
Sbjct: 144 VDPIQSVKGKVVIDAFRSINPQTIMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIA 203
Query: 181 INYRKNELEEXMLLNLHKKKWT-----RWFDTQAF*FTF*N**TDC-SGDAKFSSQVQQG 342
INYRKNELEE MLLNLHKKKWT R FDT + T + S AK++ VQ+
Sbjct: 204 INYRKNELEEKMLLNLHKKKWTDGLTLRRFDTHSK--TNEQTVQEMLSLAAKYNKAVQE- 260
Query: 343 XAGGXXNCXQKNLQLXMWGGXMLXKHLEXHVSNLMSSTIVQTLGMMLDXVVF 498
+ L + G KHLE HVSNLMSS IVQTLG MLD VVF
Sbjct: 261 ----EDELSPEKLAIVNVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTVVF 308
Score = 163 (57.4 bits), Expect = 5.1e-15, Sum P(2) = 5.1e-15
Identities = 37/57 (64%), Positives = 40/57 (70%), Frame = +2
Query: 185 ITERMN-LKRXCCLTFTKRSGPDGLTLRHFDSXSKTNEQTVQEMLSLAAKYNKAXQE 352
I R N L+ L K+ DGLTLR FD+ SKTNEQTVQEMLSLAAKYNKA QE
Sbjct: 204 INYRKNELEEKMLLNLHKKKWTDGLTLRRFDTHSKTNEQTVQEMLSLAAKYNKAVQE 260
Score = 58 (20.4 bits), Expect = 5.1e-15, Sum P(2) = 5.1e-15
Identities = 13/18 (72%), Positives = 13/18 (72%), Frame = +3
Query: 363 LPPEKLAIAXVGRQXAXK 416
L PEKLAI VGRQ A K
Sbjct: 264 LSPEKLAIVNVGRQDAKK 281
>gi|5031981 ref|NP_005796.1| 26S proteasome-associated pad1 homolog [Homo
sapiens] >gi|11429974 ref|XP_002532.1| 26S proteasome-associated
pad1 homolog [Homo sapiens] >gi|1923256|gb|AAC51866.1| (U86782) 26S
proteasome-associated pad1 homolog [Homo sapiens]
Length = 310
Frame 3 hits (HSPs): ___
Frame 2 hits (HSPs): __________
Frame 1 hits (HSPs): _______________ _____
__________________________________________________
Database sequence: | | | | | | | | 310
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 372 (131.0 bits), Expect = 1.1e-43, Sum P(3) = 1.1e-43
Identities = 72/90 (80%), Positives = 75/90 (83%), Frame = +1
Query: 1 VDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNXHYYSIA 180
VDPIQSVKGKVVIDAFRLIN M+LG EPRQTTSNLGHLNKPSIQALIHGLN HYYSI
Sbjct: 145 VDPIQSVKGKVVIDAFRLINANMMVLGHEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIT 204
Query: 181 INYRKNELEEXMLLNLHKKKWTRWFDTQAF 270
INYRKNELE+ MLLNLHKK W Q +
Sbjct: 205 INYRKNELEQKMLLNLHKKSWMEGLTLQDY 234
Score = 105 (37.0 bits), Expect = 5.4e-09, Sum P(3) = 5.4e-09
Identities = 25/57 (43%), Positives = 33/57 (57%), Frame = +2
Query: 185 ITERMN-LKRXCCLTFTKRSGPDGLTLRHFDSXSKTNEQTVQEMLSLAAKYNKAXQE 352
I R N L++ L K+S +GLTL+ + K NE V+EML LA YNKA +E
Sbjct: 205 INYRKNELEQKMLLNLHKKSWMEGLTLQDYSEHCKHNESVVKEMLELAKNYNKAVEE 261
Score = 85 (29.9 bits), Expect = 1.1e-43, Sum P(3) = 1.1e-43
Identities = 18/28 (64%), Positives = 20/28 (71%), Frame = +1
Query: 415 KHLEXHVSNLMSSTIVQTLGMMLDXVVF 498
+HLE HV LM+S IVQ L MLD VVF
Sbjct: 282 RHLEEHVDVLMTSNIVQCLAAMLDTVVF 309
Score = 41 (14.4 bits), Expect = 1.1e-43, Sum P(3) = 1.1e-43
Identities = 8/14 (57%), Positives = 11/14 (78%), Frame = +3
Query: 363 LPPEKLAIAXVGRQ 404
+ PE+LAI VG+Q
Sbjct: 265 MTPEQLAIKNVGKQ 278
>gi|10946952 ref|NP_067501.1| 26S proteasome-associated pad1 homolog; 26S
proteasome non-ATPase subunit [Mus musculus]
>gi|2505940|emb|CAA73514.1| (Y13071) 26S proteasome, non-ATPase
subunit [Mus musculus]
Length = 309
Frame 3 hits (HSPs): ___
Frame 2 hits (HSPs): __________
Frame 1 hits (HSPs): _______________ _____
__________________________________________________
Database sequence: | | | | | | | | 309
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 372 (131.0 bits), Expect = 1.1e-43, Sum P(3) = 1.1e-43
Identities = 72/90 (80%), Positives = 75/90 (83%), Frame = +1
Query: 1 VDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNXHYYSIA 180
VDPIQSVKGKVVIDAFRLIN M+LG EPRQTTSNLGHLNKPSIQALIHGLN HYYSI
Sbjct: 144 VDPIQSVKGKVVIDAFRLINANMMVLGHEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIT 203
Query: 181 INYRKNELEEXMLLNLHKKKWTRWFDTQAF 270
INYRKNELE+ MLLNLHKK W Q +
Sbjct: 204 INYRKNELEQKMLLNLHKKSWMEGLTLQDY 233
Score = 105 (37.0 bits), Expect = 5.3e-09, Sum P(3) = 5.3e-09
Identities = 25/57 (43%), Positives = 33/57 (57%), Frame = +2
Query: 185 ITERMN-LKRXCCLTFTKRSGPDGLTLRHFDSXSKTNEQTVQEMLSLAAKYNKAXQE 352
I R N L++ L K+S +GLTL+ + K NE V+EML LA YNKA +E
Sbjct: 204 INYRKNELEQKMLLNLHKKSWMEGLTLQDYSEHCKHNESVVKEMLELAKNYNKAVEE 260
Score = 85 (29.9 bits), Expect = 1.1e-43, Sum P(3) = 1.1e-43
Identities = 18/28 (64%), Positives = 20/28 (71%), Frame = +1
Query: 415 KHLEXHVSNLMSSTIVQTLGMMLDXVVF 498
+HLE HV LM+S IVQ L MLD VVF
Sbjct: 281 RHLEEHVDVLMTSNIVQCLAAMLDTVVF 308
Score = 41 (14.4 bits), Expect = 1.1e-43, Sum P(3) = 1.1e-43
Identities = 8/14 (57%), Positives = 11/14 (78%), Frame = +3
Query: 363 LPPEKLAIAXVGRQ 404
+ PE+LAI VG+Q
Sbjct: 264 MTPEQLAIKNVGKQ 277
>gi|6434964|gb|AAF08394.1|AF145313_1 (AF145313) 26S proteasome regulatory
complex subunit p37B [Drosophila melanogaster]
>gi|7296942|gb|AAF52215.1| (AE003608) Rpn11 gene product
[Drosophila melanogaster]
Length = 308
Frame 3 hits (HSPs): ___
Frame 2 hits (HSPs): __________
Frame 1 hits (HSPs): ______________ _____
__________________________________________________
Database sequence: | | | | | | | | 308
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 375 (132.0 bits), Expect = 3.5e-43, Sum P(3) = 3.5e-43
Identities = 70/81 (86%), Positives = 75/81 (92%), Frame = +1
Query: 1 VDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNXHYYSIA 180
VDPIQSVKGKVVIDAFRLINP ++LGQEPRQTTSNLGHL KPS+QALIHGLN HYYSI+
Sbjct: 143 VDPIQSVKGKVVIDAFRLINPNMLVLGQEPRQTTSNLGHLQKPSVQALIHGLNRHYYSIS 202
Query: 181 INYRKNELEEXMLLNLHKKKW 243
INYRKNELE+ MLLNLHKK W
Sbjct: 203 INYRKNELEQKMLLNLHKKSW 223
Score = 102 (35.9 bits), Expect = 8.7e-08, Sum P(3) = 8.7e-08
Identities = 24/57 (42%), Positives = 32/57 (56%), Frame = +2
Query: 185 ITERMN-LKRXCCLTFTKRSGPDGLTLRHFDSXSKTNEQTVQEMLSLAAKYNKAXQE 352
I R N L++ L K+S DGLTL ++ NE TV EML LA YNK+ ++
Sbjct: 203 INYRKNELEQKMLLNLHKKSWKDGLTLSDYNEHCSINEDTVAEMLDLAKNYNKSLED 259
Score = 77 (27.1 bits), Expect = 3.5e-43, Sum P(3) = 3.5e-43
Identities = 15/28 (53%), Positives = 19/28 (67%), Frame = +1
Query: 415 KHLEXHVSNLMSSTIVQTLGMMLDXVVF 498
+HLE V +M + IVQ LG MLD +VF
Sbjct: 280 RHLEEKVDKVMQNNIVQCLGAMLDTIVF 307
Score = 41 (14.4 bits), Expect = 3.5e-43, Sum P(3) = 3.5e-43
Identities = 8/14 (57%), Positives = 11/14 (78%), Frame = +3
Query: 363 LPPEKLAIAXVGRQ 404
+ PE+LAI VG+Q
Sbjct: 263 MTPEQLAIKNVGKQ 276
>gi|2345100|gb|AAC02298.1| (AF014465) Pad1 homolog [Schistosoma mansoni]
Length = 313
Frame 2 hits (HSPs): ________
Frame 1 hits (HSPs): ______________ _____
__________________________________________________
Database sequence: | | | | | | | | 313
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 327 (115.1 bits), Expect = 1.5e-42, Sum P(3) = 1.5e-42
Identities = 61/81 (75%), Positives = 71/81 (87%), Frame = +1
Query: 1 VDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNXHYYSIA 180
VDPIQSVKGKVVIDAFRLINP ++ QEPRQTTSN+GHL+KP+IQALIHGLN HYYS+
Sbjct: 148 VDPIQSVKGKVVIDAFRLINPNLVIANQEPRQTTSNVGHLSKPTIQALIHGLNRHYYSLP 207
Query: 181 INYRKNELEEXMLLNLHKKKW 243
INYRKN+ E ML+NL+K+ W
Sbjct: 208 INYRKNKWEIKMLMNLNKRTW 228
Score = 82 (28.9 bits), Expect = 1.5e-42, Sum P(3) = 1.5e-42
Identities = 15/44 (34%), Positives = 26/44 (59%), Frame = +2
Query: 221 LTFTKRSGPDGLTLRHFDSXSKTNEQTVQEMLSLAAKYNKAXQE 352
+ KR+ DGLTL +++ N +T+Q ML L Y+K+ ++
Sbjct: 221 MNLNKRTWRDGLTLEDYNTHCSANHKTLQTMLDLVKSYHKSLED 264
Score = 78 (27.5 bits), Expect = 1.5e-42, Sum P(3) = 1.5e-42
Identities = 16/28 (57%), Positives = 19/28 (67%), Frame = +1
Query: 415 KHLEXHVSNLMSSTIVQTLGMMLDXVVF 498
+HL HV LM+S I Q+LG ML VVF
Sbjct: 285 RHLGEHVDELMTSNITQSLGAMLHSVVF 312
>gi|6752672|gb|AAF27818.1|AF195189_1 (AF195189) yippee interacting protein 5
[Drosophila melanogaster]
Length = 229
Frame 3 hits (HSPs): ____
Frame 2 hits (HSPs): ______________
Frame 1 hits (HSPs): __________________ _______
__________________________________________________
Database sequence: | | | | | | 229
0 50 100 150 200
Plus Strand HSPs:
Score = 358 (126.0 bits), Expect = 6.9e-41, Sum P(3) = 6.9e-41
Identities = 67/78 (85%), Positives = 72/78 (92%), Frame = +1
Query: 10 IQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNXHYYSIAINY 189
IQSVKGKVVIDAFRLINP ++LGQEPRQTTSNLGHL KPS+QALIHGLN HYYSI+INY
Sbjct: 67 IQSVKGKVVIDAFRLINPNMLVLGQEPRQTTSNLGHLQKPSVQALIHGLNRHYYSISINY 126
Query: 190 RKNELEEXMLLNLHKKKW 243
RKNELE+ MLLNLHKK W
Sbjct: 127 RKNELEQKMLLNLHKKSW 144
Score = 98 (34.5 bits), Expect = 1.8e-07, Sum P(3) = 1.8e-07
Identities = 23/57 (40%), Positives = 31/57 (54%), Frame = +2
Query: 185 ITERMN-LKRXCCLTFTKRSGPDGLTLRHFDSXSKTNEQTVQEMLSLAAKYNKAXQE 352
I R N L++ L K+S DGLTL ++ NE TV EML A YNK+ ++
Sbjct: 124 INYRKNELEQKMLLNLHKKSWKDGLTLSDYNEHCSINEDTVAEMLDFAKNYNKSLED 180
Score = 72 (25.3 bits), Expect = 6.9e-41, Sum P(3) = 6.9e-41
Identities = 14/28 (50%), Positives = 18/28 (64%), Frame = +1
Query: 415 KHLEXHVSNLMSSTIVQTLGMMLDXVVF 498
+HLE +M + IVQ LG MLD +VF
Sbjct: 201 RHLEEKXXKVMQNNIVQCLGAMLDTIVF 228
Score = 41 (14.4 bits), Expect = 6.9e-41, Sum P(3) = 6.9e-41
Identities = 8/14 (57%), Positives = 11/14 (78%), Frame = +3
Query: 363 LPPEKLAIAXVGRQ 404
+ PE+LAI VG+Q
Sbjct: 184 MTPEQLAIKNVGKQ 197
>gi|11281515|pir||T44427 hypothetical protein - fission yeast
(Schizosaccharomyces pombe) >gi|497633|dbj|BAA06529.1| (D31731) ORF
[Schizosaccharomyces pombe]
Length = 308
Frame 3 hits (HSPs): _____
Frame 1 hits (HSPs): ______________ _____
__________________________________________________
Database sequence: | | | | | | | | 308
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 367 (129.2 bits), Expect = 6.0e-40, Sum P(3) = 6.0e-40
Identities = 68/81 (83%), Positives = 74/81 (91%), Frame = +1
Query: 1 VDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNXHYYSIA 180
VDPIQSVKGKVVIDAFRLINP T+M+GQEPRQTTSNLGH+NKPSIQALIHGL HYYS+
Sbjct: 144 VDPIQSVKGKVVIDAFRLINPSTLMMGQEPRQTTSNLGHINKPSIQALIHGLGRHYYSLR 203
Query: 181 INYRKNELEEXMLLNLHKKKW 243
INY+K ELEE MLLNLHK+ W
Sbjct: 204 INYKKTELEEIMLLNLHKQPW 224
Score = 53 (18.7 bits), Expect = 6.0e-40, Sum P(3) = 6.0e-40
Identities = 11/28 (39%), Positives = 14/28 (50%), Frame = +1
Query: 415 KHLEXHVSNLMSSTIVQTLGMMLDXVVF 498
KHL+ V + + I L MLD V F
Sbjct: 281 KHLDAEVQKCIDNNISSMLACMLDSVAF 308
Score = 42 (14.8 bits), Expect = 6.0e-40, Sum P(3) = 6.0e-40
Identities = 10/27 (37%), Positives = 13/27 (48%), Frame = +3
Query: 336 TRXCRRXXXLPPEKLAIAXVGRQXAXK 416
T + L PE+L I VG+Q K
Sbjct: 255 TERVQNEVTLSPEQLRIQYVGKQDPKK 281
>gi|3334476|sp|P41878|PAD1_SCHPO PAD1 PROTEIN >gi|7493500|pir||T38630
transcription regulator - fission yeast (Schizosaccharomyces pombe)
>gi|11281516|pir||T43293 multidrug resistance protein sks1 -
fission yeast (Schizosaccharomyces pombe)
>gi|624936|dbj|BAA08087.1| (D45047) 308 AA protein
[Schizosaccharomyces pombe] >gi|1507667|dbj|BAA12708.1| (D84656)
bfr2+ protein/pad1+ protein/sks1+ protein [Schizosaccharomyces
pombe] >gi|2388964|emb|CAB11697.1| (Z98979) pad1 protein; 26S
proteasome subunit [Schizosaccharomyces pombe]
Length = 308
Frame 3 hits (HSPs): _____
Frame 1 hits (HSPs): ______________ _____
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | | | 308
0 50 100 150 200 250 300
__________________
Annotated Domains:
DOMO DM04933: 1..247
DOMO DM07231: 249..307
PFAM Mov34: Mov34 family 25..294
PRODOM PD004392: C61A(2) 22..174
PRODOM PD009943: 177..307
__________________
Plus Strand HSPs:
Score = 367 (129.2 bits), Expect = 6.0e-40, Sum P(3) = 6.0e-40
Identities = 68/81 (83%), Positives = 74/81 (91%), Frame = +1
Query: 1 VDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNXHYYSIA 180
VDPIQSVKGKVVIDAFRLINP T+M+GQEPRQTTSNLGH+NKPSIQALIHGL HYYS+
Sbjct: 144 VDPIQSVKGKVVIDAFRLINPSTLMMGQEPRQTTSNLGHINKPSIQALIHGLGRHYYSLR 203
Query: 181 INYRKNELEEXMLLNLHKKKW 243
INY+K ELEE MLLNLHK+ W
Sbjct: 204 INYKKTELEEIMLLNLHKQPW 224
Score = 53 (18.7 bits), Expect = 6.0e-40, Sum P(3) = 6.0e-40
Identities = 11/28 (39%), Positives = 14/28 (50%), Frame = +1
Query: 415 KHLEXHVSNLMSSTIVQTLGMMLDXVVF 498
KHL+ V + + I L MLD V F
Sbjct: 281 KHLDAEVQKCIDNNISSMLACMLDSVAF 308
Score = 42 (14.8 bits), Expect = 6.0e-40, Sum P(3) = 6.0e-40
Identities = 10/27 (37%), Positives = 13/27 (48%), Frame = +3
Query: 336 TRXCRRXXXLPPEKLAIAXVGRQXAXK 416
T + L PE+L I VG+Q K
Sbjct: 255 TERVQNEVTLSPEQLRIQYVGKQDPKK 281
>gi|7505445|pir||T33344 hypothetical protein K07D4.3 - Caenorhabditis elegans
>gi|3319432|gb|AAC26287.1| (AF077534) similar to the proteasome
regulatory subunit [Caenorhabditis elegans]
Length = 312
Frame 1 hits (HSPs): ______________ _______
__________________________________________________
Database sequence: | | | | | | | | 312
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 335 (117.9 bits), Expect = 7.2e-33, Sum P(2) = 7.2e-33
Identities = 65/81 (80%), Positives = 70/81 (86%), Frame = +1
Query: 1 VDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNXHYYSIA 180
VDPIQSVKGKVVIDAFR INPQ+M L QEPRQTTSNLGHL KPSIQALIHGLN HYYSI
Sbjct: 147 VDPIQSVKGKVVIDAFRTINPQSMALNQEPRQTTSNLGHLQKPSIQALIHGLNRHYYSIP 206
Query: 181 INYRKNELEEXMLLNLHKKKW 243
I YR ++LE+ MLLNL+K W
Sbjct: 207 IAYRTHDLEQKMLLNLNKLSW 227
Score = 49 (17.2 bits), Expect = 7.2e-33, Sum P(2) = 7.2e-33
Identities = 13/41 (31%), Positives = 21/41 (51%), Frame = +1
Query: 361 NCXQKNLQLXMWGGXMLXKHLEXHVSNLMSSTIVQTL-GMM 480
N + L + G +H+ VS +++ IVQ+L GMM
Sbjct: 266 NMTDQELAIKNVGKMDPKRHIADEVSKMLNDNIVQSLAGMM 306
>gi|2104757|gb|AAB57823.1| (U96916) sks1 multidrug resistance protein homolog
[Dictyostelium discoideum]
Length = 306
Frame 2 hits (HSPs): __________
Frame 1 hits (HSPs): ______________ _____
__________________________________________________
Database sequence: | | | | | | | | 306
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 298 (104.9 bits), Expect = 3.8e-30, Sum P(2) = 3.8e-30
Identities = 61/82 (74%), Positives = 65/82 (79%), Frame = +1
Query: 1 VDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNXHYYSIA 180
VDP+QSV+GKVVIDAFR I EPRQ TSNLGHL PSIQALIHG +YYSIA
Sbjct: 145 VDPLQSVRGKVVIDAFRTIKTSPTA---EPRQITSNLGHLQDPSIQALIHGSIRNYYSIA 201
Query: 181 INYRKNELEEXMLLNLHKKKWT 246
INYRKNELE+ MLLNLHKKKWT
Sbjct: 202 INYRKNELEQKMLLNLHKKKWT 223
Score = 78 (27.5 bits), Expect = 0.061, Sum P(2) = 0.059
Identities = 17/57 (29%), Positives = 31/57 (54%), Frame = +2
Query: 185 ITERMN-LKRXCCLTFTKRSGPDGLTLRHFDSXSKTNEQTVQEMLSLAAKYNKAXQE 352
I R N L++ L K+ +GL + FD+ ++NE+ + +L L +Y K+ Q+
Sbjct: 202 INYRKNELEQKMLLNLHKKKWTEGLIVDKFDTHEQSNEKQINNLLELTKQYQKSIQD 258
Score = 60 (21.1 bits), Expect = 3.8e-30, Sum P(2) = 3.8e-30
Identities = 12/28 (42%), Positives = 18/28 (64%), Frame = +1
Query: 415 KHLEXHVSNLMSSTIVQTLGMMLDXVVF 498
+HL V LM++ +V+ L +MLD V F
Sbjct: 279 RHLISDVHTLMANNVVRVLTVMLDTVTF 306
>gi|6321116 ref|NP_011194.1| Similar to S. pombe PAD1 gene product; Rpn11p
[Saccharomyces cerevisiae] >gi|1171012|sp|P43588|MPR1_YEAST
PROTEASOME REGULATORY SUBUNIT RPN11 (MPR1 PROTEIN)
>gi|1084729|pir||S56259 26S proteasome regulatory particle chain
RPN11 - yeast (Saccharomyces cerevisiae)
>gi|836759|dbj|BAA09243.1| (D50617) YFR004W [Saccharomyces
cerevisiae] >gi|975708|emb|CAA56098.1| (X79561) mpr1 [Saccharomyces
cerevisiae]
Length = 306
Frame 2 hits (HSPs): _______
Frame 1 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | | | | | 306
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 280 (98.6 bits), Expect = 4.1e-27, Sum P(2) = 4.1e-27
Identities = 55/81 (67%), Positives = 64/81 (79%), Frame = +1
Query: 1 VDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNXHYYSIA 180
VDPIQSVKGKVVIDAFRLI+ ++ EPRQTTSN G LNK +IQALIHGLN HYYS+
Sbjct: 141 VDPIQSVKGKVVIDAFRLIDTGALINNLEPRQTTSNTGLLNKANIQALIHGLNRHYYSLN 200
Query: 181 INYRKNELEEXMLLNLHKKKW 243
I+Y K E ML+NLHK++W
Sbjct: 201 IDYHKTAKETKMLMNLHKEQW 221
Score = 49 (17.2 bits), Expect = 4.1e-27, Sum P(2) = 4.1e-27
Identities = 9/40 (22%), Positives = 20/40 (50%), Frame = +2
Query: 233 KRSGPDGLTLRHFDSXSKTNEQTVQEMLSLAAKYNKAXQE 352
K GL + ++ ++N + M+ +A +Y+K +E
Sbjct: 218 KEQWQSGLKMYDYEEKEESNLAATKSMVKIAEQYSKRIEE 257
>gi|1176714|sp|P41883|YPT5_CAEEL HYPOTHETICAL 35.8 KD PROTEIN F37A4.5 IN
CHROMOSOME III >gi|1078854|pir||S44642 hypothetical protein F37A4.5
- Caenorhabditis elegans >gi|458963|gb|AAA50633.1| (U00032) weak
similarity to D. melanogaster MOV34 protein [Caenorhabditis
elegans]
Length = 319
Frame 1 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | | | | | 319
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 242 (85.2 bits), Expect = 1.7e-19, P = 1.7e-19
Identities = 47/86 (54%), Positives = 61/86 (70%), Frame = +1
Query: 1 VDPIQSVKGKVVIDAFRLINPQTMMLGQ-----EPRQTTSNLGHLNKPSIQALIHGLNXH 165
VDPIQSVKGKV++DAFR +NP + + EPRQTTSNLGHL KPS+ +++HGL
Sbjct: 143 VDPIQSVKGKVMLDAFRSVNPLNLQIRPLAPTAEPRQTTSNLGHLTKPSLISVVHGLGTK 202
Query: 166 YYSIAINYRKNELEEXMLLNLHKKKW 243
YYS+ + YR E+ ML+ L+KK W
Sbjct: 203 YYSLNVAYRMGSNEQKMLMCLNKKSW 228
>gi|2345102|gb|AAC02299.1| (AF014466) trans-spliced variant protein
[Schistosoma mansoni]
Length = 167
Frame 1 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | | 167
0 50 100 150
Plus Strand HSPs:
Score = 141 (49.6 bits), Expect = 8.5e-09, P = 8.5e-09
Identities = 28/34 (82%), Positives = 30/34 (88%), Frame = +1
Query: 1 VDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTT 102
VDPIQSVKGKVVIDAFRLINP ++ QEPRQTT
Sbjct: 134 VDPIQSVKGKVVIDAFRLINPNLVIANQEPRQTT 167
>gi|12580747|emb|CAC27065.1| (AJ010592) 26S proteasome regulatory subunit
[Guillardia theta]
Length = 281
Frame 1 hits (HSPs): ________________
__________________________________________________
Database sequence: | | | | | | | 281
0 50 100 150 200 250
Plus Strand HSPs:
Score = 123 (43.3 bits), Expect = 8.0e-05, P = 8.0e-05
Identities = 32/90 (35%), Positives = 54/90 (60%), Frame = +1
Query: 1 VDPIQSVKGKVVIDAFRLINP-QTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNXHYYSI 177
+DPIQS K ++ I+A+RL + Q + L +E TSN+ + S Q G+N +YYS+
Sbjct: 131 IDPIQSFKNRMFIEAYRLFSGNQKVRLERESLSITSNI---DTKSFQKDDQGINKYYYSL 187
Query: 178 AINYRKNELEEXMLLNLHKKKW-TRWFDTQAF 270
I+ KN +EE ++ ++ K ++ FD + F
Sbjct: 188 RISTIKNVIEELLISSVFKCSIDSKAFDKKLF 219
>gi|9367753|emb|CAB97491.1| (AJ297367) non ATPase subunit MPR1 of 26S proteasom
[Giardia intestinalis]
Length = 298
Frame 1 hits (HSPs): ________________
__________________________________________________
Database sequence: | | | | | | | 298
0 50 100 150 200 250
Plus Strand HSPs:
Score = 102 (35.9 bits), Expect = 0.034, P = 0.034
Identities = 27/89 (30%), Positives = 44/89 (49%), Frame = +1
Query: 1 VDPIQSVKGKVVIDAFRLINPQTMMLG--------QEPRQTTSNLGHLNKPSIQALIHGL 156
+DP+ S GK+VI+AFRLI +M L + R TS+ G + + +L+ GL
Sbjct: 147 LDPMNSTSGKLVIEAFRLIPGASMGLSFGISFGSSTDTRVITSDKGFMRPKNPTSLLRGL 206
Query: 157 NXHYYSIAINYRKNELEEXMLLNLHKKKW 243
+ +Y++ + + E ML L W
Sbjct: 207 DKQFYAMPLTFSMLGYERVMLSKLASTDW 235
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.96
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.353 0.158 0.576
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.368 0.161 0.625
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.346 0.150 0.493
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.365 0.160 0.645
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.353 0.153 0.574
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.351 0.150 0.525
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 218 200 10. 77 3 12 22 0.094 35
31 0.10 38
+2 0 218 199 10. 77 3 12 22 0.093 35
31 0.10 38
+1 0 218 201 10. 77 3 12 22 0.094 35
31 0.10 38
-1 0 218 198 10. 76 3 12 22 0.093 35
31 0.10 38
-2 0 218 200 10. 77 3 12 22 0.094 35
31 0.10 38
-3 0 218 200 10. 77 3 12 22 0.094 35
31 0.10 38
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 16
No. of states in DFA: 601 (59 KB)
Total size of DFA: 229 KB (256 KB)
Time to generate neighborhood: 0.02u 0.00s 0.02t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 172.18u 1.20s 173.38t Elapsed: 00:00:34
Total cpu time: 172.23u 1.22s 173.45t Elapsed: 00:00:34
Start: Mon Oct 1 16:12:43 2001 End: Mon Oct 1 16:13:17 2001
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000