BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= AA01183
(127 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|53728357|ref|ZP_00348136.1| hypothetical protein Haso020... 101 2e-20
gi|113460250|ref|YP_718308.1| hypothetical protein HS_0104 ... 100 3e-20
gi|110735355|gb|ABG89248.1| hypothetical protein mh2024 [Ma... 95 1e-18
gi|77456654|ref|YP_346159.1| lipoprotein, putative [Pseudom... 53 5e-06
gi|66043693|ref|YP_233534.1| lipoprotein, putative [Pseudom... 53 6e-06
gi|70733969|ref|YP_257609.1| lipoprotein, putative [Pseudom... 52 9e-06
gi|28872219|ref|NP_794838.1| lipoprotein, putative [Pseudom... 52 1e-05
>gi|53728357|ref|ZP_00348136.1| hypothetical protein Haso02001498 [Haemophilus somnus 2336]
Length = 155
Score = 101 bits (251), Expect = 2e-20, Method: Composition-based stats.
Identities = 55/122 (45%), Positives = 76/122 (62%), Gaps = 9/122 (7%)
Query: 7 LNAQHQLQQASLLTLQTEPQQWRWVQTDPLGAPLARVILTPQGWQNDGFIMPNQQARRLF 66
+ Q + SLL ++ +P QWRWVQTDPLGAP+AR++L+ GWQNDGF+MPN+QA++LF
Sbjct: 38 ITQQFPQSEKSLLAIEVQPHQWRWVQTDPLGAPIARLVLSKAGWQNDGFVMPNKQAKQLF 97
Query: 67 SALATALNPQHPLFTFSRIEPVAQ--GNDYFIQHNKVWRIALRPPQIEIHLADDSRWRIE 124
SA+AT F + I V Q N+Y H +WR + + + I L D S W +E
Sbjct: 98 SAIAT-------YFMSTMIFDVQQISENEYAQNHRLIWRFSPQKHGVNIELGDKSVWFVE 150
Query: 125 EL 126
L
Sbjct: 151 PL 152
>gi|113460250|ref|YP_718308.1| hypothetical protein HS_0104 [Haemophilus somnus 129PT]
gi|112822293|gb|ABI24382.1| conserved hypothetical protein [Haemophilus somnus 129PT]
Length = 144
Score = 100 bits (248), Expect = 3e-20, Method: Composition-based stats.
Identities = 55/122 (45%), Positives = 76/122 (62%), Gaps = 9/122 (7%)
Query: 7 LNAQHQLQQASLLTLQTEPQQWRWVQTDPLGAPLARVILTPQGWQNDGFIMPNQQARRLF 66
+ Q + SLL ++ +P QWRWVQTDPLGAP+AR++L+ GWQNDGF+MPN+QA++LF
Sbjct: 27 ITQQFPQSEKSLLAIEVQPHQWRWVQTDPLGAPIARLVLSKAGWQNDGFVMPNKQAKQLF 86
Query: 67 SALATALNPQHPLFTFSRIEPVAQ--GNDYFIQHNKVWRIALRPPQIEIHLADDSRWRIE 124
SA+AT F + I V Q N+Y H +WR + + + I L D S W +E
Sbjct: 87 SAIAT-------YFMSTMIFDVQQISENEYAQNHRLIWRFSPQKHGVNIELGDKSVWFVE 139
Query: 125 EL 126
L
Sbjct: 140 PL 141
>gi|110735355|gb|ABG89248.1| hypothetical protein mh2024 [Mannheimia haemolytica]
gi|153092953|gb|EDN73979.1| hypothetical protein MHA_1039 [Mannheimia haemolytica PHL213]
Length = 139
Score = 95.1 bits (235), Expect = 1e-18, Method: Composition-based stats.
Identities = 52/112 (46%), Positives = 67/112 (59%), Gaps = 16/112 (14%)
Query: 15 QASLLTLQTEPQQWRWVQTDPLGAPLARVILTPQGWQNDGFIMPNQQARRLFSALATALN 74
Q SLL +Q +WRW+QTDPLGAP+ARV LT +GW+ DGF+MPN+QA+ LF+AL ALN
Sbjct: 42 QQSLLLIQFYENKWRWIQTDPLGAPIARVWLTKKGWEPDGFVMPNKQAQLLFTALVNALN 101
Query: 75 PQHPLFTFSRIEPVAQGNDYFIQHNKVWRIALRPPQIEIHLADDSRWRIEEL 126
P P F +K W+I Q I L D S+W++E L
Sbjct: 102 PHSPPFYL----------------DKGWKIEREKSQFTIWLPDSSKWKVEIL 137
>gi|77456654|ref|YP_346159.1| lipoprotein, putative [Pseudomonas fluorescens PfO-1]
gi|77380657|gb|ABA72170.1| lipoprotein, putative [Pseudomonas fluorescens PfO-1]
Length = 160
Score = 53.1 bits (126), Expect = 5e-06, Method: Composition-based stats.
Identities = 44/114 (38%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 14 QQASLLTLQTEPQQWRWVQTDPLGAPLARVILTPQGWQNDGFIMPNQQARRLFSALATAL 73
QQ LL +Q E RW DPLG P AR L WQ DG + PN +AR LF+AL AL
Sbjct: 45 QQDWLLVIQREGPGIRWSMMDPLGIPQARQQLIDGHWQADGLLPPNPEARELFAALLFAL 104
Query: 74 NPQHPLFTFSRIEPVAQGNDYFIQHNKVWRIAL-RPPQIEIHLADDSRWRIEEL 126
P L SR P AQ W I +P E++L +R+ L
Sbjct: 105 TPAGEL---SRNYPEAQQQGGRRSLPARWDIRYTQPLSFELNLPQGPHYRVTPL 155
>gi|66043693|ref|YP_233534.1| lipoprotein, putative [Pseudomonas syringae pv. syringae B728a]
gi|63254400|gb|AAY35496.1| lipoprotein, putative [Pseudomonas syringae pv. syringae B728a]
Length = 160
Score = 52.8 bits (125), Expect = 6e-06, Method: Composition-based stats.
Identities = 30/66 (45%), Positives = 36/66 (54%)
Query: 10 QHQLQQASLLTLQTEPQQWRWVQTDPLGAPLARVILTPQGWQNDGFIMPNQQARRLFSAL 69
Q Q LL +Q E RW DPLG P AR +L WQ DG + PN +AR LF+AL
Sbjct: 40 QADQHQDWLLIIQRENGGLRWSMMDPLGIPQARQLLIDGKWQADGLLPPNPEARELFAAL 99
Query: 70 ATALNP 75
A+ P
Sbjct: 100 MFAMTP 105
>gi|70733969|ref|YP_257609.1| lipoprotein, putative [Pseudomonas fluorescens Pf-5]
gi|68348268|gb|AAY95874.1| lipoprotein, putative [Pseudomonas fluorescens Pf-5]
Length = 161
Score = 52.0 bits (123), Expect = 9e-06, Method: Composition-based stats.
Identities = 35/77 (45%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 6 QLNAQHQL---QQASLLTLQTEPQQWRWVQTDPLGAPLARVILTPQGWQNDGFIMPNQQA 62
QL+ Q Q +Q LL +Q E RW DPLG P AR L WQ DG + PN +A
Sbjct: 34 QLHVQRQADGQRQDWLLVIQAEGPDLRWSLMDPLGIPQARQRLVHGQWQADGLLPPNPEA 93
Query: 63 RRLFSALATALNPQHPL 79
R LF+AL AL P+ L
Sbjct: 94 RELFAALLFALTPEAEL 110
>gi|28872219|ref|NP_794838.1| lipoprotein, putative [Pseudomonas syringae pv. tomato str. DC3000]
gi|28855473|gb|AAO58533.1| lipoprotein, putative [Pseudomonas syringae pv. tomato str. DC3000]
Length = 160
Score = 52.0 bits (123), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/66 (43%), Positives = 37/66 (56%)
Query: 10 QHQLQQASLLTLQTEPQQWRWVQTDPLGAPLARVILTPQGWQNDGFIMPNQQARRLFSAL 69
Q +Q +L +Q E RW DPLG P AR +L WQ DG + PN +AR LF+AL
Sbjct: 40 QTDQRQDWMLVIQRENAGLRWSMMDPLGIPQARQLLINGQWQADGLLPPNPEARELFAAL 99
Query: 70 ATALNP 75
A+ P
Sbjct: 100 MFAMTP 105
Database: nr
Posted date: Sep 17, 2007 11:41 AM
Number of letters in database: 999,999,834
Number of sequences in database: 2,976,859
Database: /nucleus1/users/jsaw/ncbi/db/nr.01
Posted date: Sep 17, 2007 11:48 AM
Number of letters in database: 894,087,890
Number of sequences in database: 2,493,262
Lambda K H
0.322 0.135 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 510,070,481
Number of Sequences: 5470121
Number of extensions: 19482293
Number of successful extensions: 37488
Number of sequences better than 1.0e-05: 9
Number of HSP's better than 0.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37476
Number of HSP's gapped (non-prelim): 9
length of query: 127
length of database: 1,894,087,724
effective HSP length: 93
effective length of query: 34
effective length of database: 1,385,366,471
effective search space: 47102460014
effective search space used: 47102460014
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 124 (52.4 bits)