| Kingdom |
Category |
Genus/Species |
Count |
|
|
|
254 |
| Archaea |
|
|
73 |
| |
|
|
254 |
| |
Crenarchaeota |
|
1 |
| |
|
Caldivirga maquilingensis (cma) |
1 |
| |
Euryarchaeota |
|
72 |
| |
|
Archaeoglobus fulgidus (afu) |
1 |
| |
|
Methanosarcina acetivorans (mac) |
10 |
| |
|
Methanosarcina barkeri (mba) |
8 |
| |
|
Candidatus Methanoregula boonei (mbn) |
1 |
| |
|
Methanococcoides burtonii (mbu) |
1 |
| |
|
Methanoculleus marisnigri (mem) |
1 |
| |
|
Methanospirillum hungatei (mhu) |
5 |
| |
|
Methanocorpusculum labreanum (mla) |
9 |
| |
|
Methanosarcina mazei (mma) |
4 |
| |
|
Methanococcus maripaludis S2 (mmp) |
1 |
| |
|
Methanococcus maripaludis C5 (mmq) |
2 |
| |
|
Methanococcus maripaludis C6 (mmx) |
2 |
| |
|
Methanobrevibacter smithii ATCC 35061 (msi) |
11 |
| |
|
Methanosphaera stadtmanae (mst) |
3 |
| |
|
Methanobacterium thermoautotrophicum (mth) |
1 |
| |
|
Methanosaeta thermophila (mtp) |
2 |
| |
|
Methanococcus vannielii (mvn) |
1 |
| |
|
Pyrococcus abyssi (pab) |
1 |
| |
|
Pyrococcus furiosus (pfu) |
1 |
| |
|
Pyrococcus horikoshii (pho) |
1 |
| |
|
Picrophilus torridus (pto) |
1 |
| |
|
Uncultured methanogenic archaeon RC-I (rci) |
4 |
| |
|
Thermococcus kodakaraensis (tko) |
1 |
| Bacteria |
|
|
3520 |
| |
Acidobacteria |
|
6 |
| |
|
Solibacter usitatus (sus) |
6 |
| |
Actinobacteria |
|
53 |
| |
|
Arthrobacter aurescens (aau) |
2 |
| |
|
Arthrobacter sp. FB24 (art) |
4 |
| |
|
Bifidobacterium adolescentis (bad) |
5 |
| |
|
Bifidobacterium longum DJO10A (blj) |
8 |
| |
|
Bifidobacterium longum NCC2705 (blo) |
3 |
| |
|
Corynebacterium diphtheriae (cdi) |
2 |
| |
|
Corynebacterium glutamicum ATCC 13032 (Bielefeld) (cgb) |
1 |
| |
|
Corynebacterium glutamicum R (cgt) |
2 |
| |
|
Corynebacterium jeikeium (cjk) |
1 |
| |
|
Kineococcus radiotolerans (kra) |
2 |
| |
|
Kocuria rhizophila (krh) |
1 |
| |
|
Mycobacterium bovis BCG Pasteur 1173P2 (mbb) |
1 |
| |
|
Propionibacterium acnes (pac) |
5 |
| |
|
Rhodococcus sp. RHA1 (rha) |
2 |
| |
|
Rubrobacter xylanophilus (rxy) |
1 |
| |
|
Streptomyces coelicolor (sco) |
3 |
| |
|
Saccharopolyspora erythraea (sen) |
2 |
| |
|
Streptomyces griseus (sgr) |
3 |
| |
|
Streptomyces avermitilis (sma) |
5 |
| |
Bacteroides |
|
62 |
| |
|
Bacteroides fragilis YCH46 (bfr) |
2 |
| |
|
Bacteroides fragilis NCTC9343 (bfs) |
4 |
| |
|
Bacteroides thetaiotaomicron (bth) |
15 |
| |
|
Bacteroides vulgatus (bvu) |
14 |
| |
|
Cytophaga hutchinsonii (chu) |
4 |
| |
|
Flavobacterium johnsoniae (fjo) |
7 |
| |
|
Parabacteroides distasonis (pdi) |
14 |
| |
|
Porphyromonas gingivalis W83 (pgi) |
1 |
| |
|
Salinibacter ruber (sru) |
1 |
| |
Chlamydia |
|
1 |
| |
|
Candidatus Protochlamydia amoebophila (pcu) |
1 |
| |
Cyanobacteria |
|
16 |
| |
|
Acaryochloris marina (amr) |
4 |
| |
|
Anabaena variabilis (ava) |
1 |
| |
|
Cyanothece sp. ATCC 51142 (cyt) |
2 |
| |
|
Gloeobacter violaceus (gvi) |
2 |
| |
|
Nostoc punctiforme (npu) |
3 |
| |
|
Synechococcus sp. CC9311 (syg) |
1 |
| |
|
Synechocystis sp. PCC6803 (syn) |
2 |
| |
|
Trichodesmium erythraeum (ter) |
1 |
| |
Deinococcus-Thermus |
|
2 |
| |
|
Deinococcus geothermalis (dge) |
1 |
| |
|
Thermus thermophilus HB27 (tth) |
1 |
| |
Firmicutes |
|
2836 |
| |
|
Alkaliphilus metalliredigens (amt) |
143 |
| |
|
Alkaliphilus oremlandii (aoe) |
215 |
| |
|
Bacillus anthracis Sterne (bat) |
8 |
| |
|
Bacillus amyloliquefaciens (bay) |
13 |
| |
|
Bacillus cereus ATCC 10987 (bca) |
13 |
| |
|
Bacillus cereus ATCC 14579 (bce) |
8 |
| |
|
Bacillus clausii (bcl) |
32 |
| |
|
Bacillus cereus subsp. cytotoxis NVH 391-98 (bcy) |
17 |
| |
|
Bacillus cereus ZK (bcz) |
10 |
| |
|
Bacillus halodurans (bha) |
44 |
| |
|
Bacillus licheniformis DSM13 (bld) |
24 |
| |
|
Bacillus pumilus (bpu) |
10 |
| |
|
Bacillus subtilis (bsu) |
12 |
| |
|
Bacillus thuringiensis 97-27 (btk) |
15 |
| |
|
Bacillus thuringiensis Al Hakam (btl) |
5 |
| |
|
Bacillus weihenstephanensis (bwe) |
18 |
| |
|
Clostridium acetobutylicum (cac) |
87 |
| |
|
Clostridium botulinum B1 Okra (cbb) |
25 |
| |
|
Clostridium beijerinckii (cbe) |
208 |
| |
|
Clostridium botulinum F Langeland (cbf) |
51 |
| |
|
Clostridium botulinum A Hall (cbh) |
24 |
| |
|
Clostridium botulinum B Eklund 17B (cbk) |
68 |
| |
|
Clostridium botulinum A3 Loch Maree (cbl) |
67 |
| |
|
Clostridium botulinum A ATCC 3502 (cbo) |
14 |
| |
|
Clostridium botulinum E3 (cbt) |
81 |
| |
|
Clostridium difficile (cdf) |
138 |
| |
|
Carboxydothermus hydrogenoformans (chy) |
14 |
| |
|
Clostridium kluyveri (ckl) |
73 |
| |
|
Clostridium novyi (cno) |
75 |
| |
|
Clostridium perfringens 13 (cpe) |
25 |
| |
|
Clostridium perfringens ATCC 13124 (cpf) |
69 |
| |
|
Coprothermobacter proteolyticus (cpo) |
3 |
| |
|
Clostridium perfringens SM101 (cpr) |
55 |
| |
|
Clostridium tetani E88 (ctc) |
78 |
| |
|
Clostridium thermocellum (cth) |
377 |
| |
|
Candidatus Desulforudis audaxviator (dau) |
5 |
| |
|
Desulfotomaculum reducens (drm) |
27 |
| |
|
Desulfitobacterium hafniense (dsy) |
142 |
| |
|
Enterococcus faecalis (efa) |
22 |
| |
|
Exiguobacterium sibiricum (esi) |
8 |
| |
|
Finegoldia magna (fma) |
28 |
| |
|
Geobacillus kaustophilus (gka) |
17 |
| |
|
Geobacillus thermodenitrificans (gtn) |
14 |
| |
|
Heliobacterium modesticaldum (hmo) |
13 |
| |
|
Lactobacillus acidophilus (lac) |
4 |
| |
|
Lactobacillus delbrueckii ATCC BAA-365 (lbu) |
3 |
| |
|
Lactobacillus casei ATCC 334 (lca) |
2 |
| |
|
Lactobacillus casei BL23 (lcb) |
4 |
| |
|
Leuconostoc citreum (lci) |
4 |
| |
|
Lactobacillus delbrueckii ATCC 11842 (ldb) |
4 |
| |
|
Lactobacillus fermentum (lfe) |
3 |
| |
|
Lactobacillus gasseri (lga) |
5 |
| |
|
Lactobacillus helveticus (lhe) |
1 |
| |
|
Listeria innocua (lin) |
6 |
| |
|
Lactobacillus johnsonii (ljo) |
1 |
| |
|
Lactococcus lactis subsp. lactis IL1403 (lla) |
3 |
| |
|
Lactococcus lactis subsp. cremoris SK11 (llc) |
3 |
| |
|
Lactococcus lactis subsp. cremoris MG1363 (llm) |
6 |
| |
|
Listeria monocytogenes F2365 (lmf) |
7 |
| |
|
Listeria monocytogenes EGD-e (lmo) |
4 |
| |
|
Lactobacillus plantarum (lpl) |
3 |
| |
|
Lactobacillus reuteri F275 (Kitasato) (lrf) |
1 |
| |
|
Lactobacillus sakei (lsa) |
5 |
| |
|
Lactobacillus salivarius (lsl) |
9 |
| |
|
Lysinibacillus sphaericus (lsp) |
50 |
| |
|
Listeria welshimeri SLCC5334 (lwe) |
6 |
| |
|
Moorella thermoacetica (mta) |
7 |
| |
|
Natranaerobius thermophilus (nth) |
18 |
| |
|
Oceanobacillus iheyensis (oih) |
22 |
| |
|
Oenococcus oeni (ooe) |
2 |
| |
|
Pediococcus pentosaceus (ppe) |
4 |
| |
|
Pelotomaculum thermopropionicum (pth) |
12 |
| |
|
Staphylococcus aureus RF122 (sab) |
1 |
| |
|
Staphylococcus aureus Newman (sae) |
3 |
| |
|
Streptococcus agalactiae A909 (serotype Ia) (sak) |
4 |
| |
|
Staphylococcus aureus MRSA252 (sar) |
1 |
| |
|
Staphylococcus epidermidis ATCC 12228 (sep) |
1 |
| |
|
Streptococcus equi (sez) |
4 |
| |
|
Streptococcus gordonii (sgo) |
9 |
| |
|
Staphylococcus haemolyticus (sha) |
2 |
| |
|
Streptococcus mutans (smu) |
2 |
| |
|
Streptococcus pyogenes MGAS10394 (serotype M6) (spa) |
1 |
| |
|
Streptococcus pyogenes MGAS6180 (serotype M28) (spb) |
1 |
| |
|
Streptococcus pneumoniae D39 (spd) |
4 |
| |
|
Streptococcus pyogenes Manfredo (serotype M5) (spf) |
1 |
| |
|
Streptococcus pyogenes MGAS10750 (serotype M3) (spi) |
2 |
| |
|
Streptococcus pyogenes MGAS2096 (serotype M3) (spj) |
2 |
| |
|
Streptococcus pneumoniae Hungary19A 6 (spv) |
1 |
| |
|
Streptococcus pneumoniae G54 (spx) |
2 |
| |
|
Streptococcus sanguinis (ssa) |
3 |
| |
|
Staphylococcus saprophyticus (ssp) |
6 |
| |
|
Streptococcus suis 98HAH33 (ssv) |
2 |
| |
|
Streptococcus thermophilus LMD-9 (ste) |
1 |
| |
|
Symbiobacterium thermophilum (sth) |
13 |
| |
|
Thermoanaerobacter sp. X514 (tex) |
35 |
| |
|
Thermoanaerobacter pseudethanolicus (tpd) |
65 |
| |
|
Thermoanaerobacter tengcongensis (tte) |
76 |
| |
Fusobacteria |
|
17 |
| |
|
Fusobacterium nucleatum (fnu) |
17 |
| |
Green nonsulfur bacteria |
|
17 |
| |
|
Chloroflexus aurantiacus (cau) |
1 |
| |
|
Dehalococcoides sp. BAV1 (deb) |
2 |
| |
|
Dehalococcoides ethenogenes (det) |
2 |
| |
|
Herpetosiphon aurantiacus (hau) |
8 |
| |
|
Roseiflexus castenholzii DSM13941 (rca) |
4 |
| |
Green sulfur bacteria |
|
9 |
| |
|
Chlorobium phaeobacteroides BS1 (cpb) |
2 |
| |
|
Chlorobium phaeobacteroides DSM 266 (cph) |
1 |
| |
|
Chloroherpeton thalassium (cts) |
3 |
| |
|
Pelodictyon luteolum (plt) |
2 |
| |
|
Pelodictyon phaeoclathratiforme (pph) |
1 |
| |
Hyperthermophilic bacteria |
|
79 |
| |
|
Dictyoglomus thermophilum (dth) |
27 |
| |
|
Fervidobacterium nodosum (fno) |
17 |
| |
|
Petrotoga mobilis (pmo) |
10 |
| |
|
Sulfurihydrogenibium sp. YO3AOP1 (sul) |
1 |
| |
|
Thermotoga lettingae (tle) |
8 |
| |
|
Thermosipho melanesiensis (tme) |
3 |
| |
|
Thermotoga petrophila (tpt) |
3 |
| |
|
Thermotoga sp. RQ2 (trq) |
5 |
| |
|
Thermodesulfovibrio yellowstonii (tye) |
5 |
| |
Planctomyces |
|
5 |
| |
|
Rhodopirellula baltica (rba) |
5 |
| |
Proteobacteria |
|
181 |
| |
|
Acinetobacter baumannii ACICU (abc) |
1 |
| |
|
Arcobacter butzleri (abu) |
4 |
| |
|
Anaeromyxobacter dehalogenans (ade) |
1 |
| |
|
Alkalilimnicola ehrlichei (aeh) |
1 |
| |
|
Anaeromyxobacter sp. Fw109-5 (afw) |
1 |
| |
|
Aeromonas hydrophila (aha) |
3 |
| |
|
Acidovorax sp. JS42 (ajs) |
1 |
| |
|
Alteromonas macleodii (amc) |
1 |
| |
|
Actinobacillus pleuropneumoniae AP76 (serotype 7) (apa) |
3 |
| |
|
Agrobacterium tumefaciens C58 (Cereon) (atc) |
5 |
| |
|
Bdellovibrio bacteriovorus (bba) |
2 |
| |
|
Bradyrhizobium sp. BTAi1 (bbt) |
2 |
| |
|
Burkholderia phymatum (bph) |
2 |
| |
|
Burkholderia pseudomallei 1106a (bpl) |
1 |
| |
|
Burkholderia pseudomallei K96243 (bps) |
1 |
| |
|
Burkholderia xenovorans (bxe) |
2 |
| |
|
Cellvibrio japonicus (cja) |
1 |
| |
|
Campylobacter jejuni subsp. doylei 269.97 (cjd) |
1 |
| |
|
Campylobacter jejuni NCTC11168 (cje) |
1 |
| |
|
Campylobacter jejuni 81116 (cju) |
3 |
| |
|
Colwellia psychrerythraea (cps) |
1 |
| |
|
Cupriavidus taiwanensis (cti) |
1 |
| |
|
Chromobacterium violaceum (cvi) |
1 |
| |
|
Dechloromonas aromatica (dar) |
1 |
| |
|
Desulfovibrio desulfuricans (dde) |
1 |
| |
|
Candidatus Desulfococcus oleovorans (dol) |
3 |
| |
|
Desulfotalea psychrophila (dps) |
1 |
| |
|
Dinoroseobacter shibae (dsh) |
2 |
| |
|
Desulfovibrio vulgaris DP4 (dvl) |
1 |
| |
|
Azoarcus sp. EbN1 (eba) |
1 |
| |
|
Erwinia carotovora (eca) |
2 |
| |
|
Escherichia coli O157 Sakai (EHEC) (ecs) |
1 |
| |
|
Francisella tularensis subsp. tularensis WY96-3418 (ftw) |
1 |
| |
|
Geobacter bemidjiensis (gbm) |
6 |
| |
|
Geobacter lovleyi (glo) |
2 |
| |
|
Geobacter metallireducens (gme) |
1 |
| |
|
Geobacter sulfurreducens (gsu) |
1 |
| |
|
Geobacter uraniumreducens (gur) |
5 |
| |
|
Herminiimonas arsenicoxydans (har) |
1 |
| |
|
Haemophilus ducreyi (hdu) |
1 |
| |
|
Helicobacter hepaticus (hhe) |
1 |
| |
|
Hyphomonas neptunium (hne) |
1 |
| |
|
Idiomarina loihiensis (ilo) |
1 |
| |
|
Klebsiella pneumoniae 342 (kpe) |
2 |
| |
|
Leptothrix cholodnii (lch) |
2 |
| |
|
Legionella pneumophila Lens (lpf) |
1 |
| |
|
Mesorhizobium loti (mlo) |
3 |
| |
|
Marinomonas sp. MWYL1 (mmw) |
1 |
| |
|
Methylibium petroleiphilum (mpt) |
1 |
| |
|
Mannheimia succiniciproducens (msu) |
1 |
| |
|
Myxococcus xanthus (mxa) |
3 |
| |
|
Novosphingobium aromaticivorans (nar) |
1 |
| |
|
Orientia tsutsugamushi Ikeda (ott) |
1 |
| |
|
Pseudomonas aeruginosa PA7 (pap) |
1 |
| |
|
Pseudoalteromonas atlantica (pat) |
1 |
| |
|
Pseudomonas aeruginosa UCBPP-PA14 (pau) |
1 |
| |
|
Pelobacter carbinolicus (pca) |
2 |
| |
|
Pseudomonas entomophila (pen) |
1 |
| |
|
Pseudomonas fluorescens Pf-5 (pfl) |
1 |
| |
|
Pseudomonas fluorescens Pf0-1 (pfo) |
2 |
| |
|
Pseudoalteromonas haloplanktis (pha) |
1 |
| |
|
Psychromonas ingrahamii (pin) |
3 |
| |
|
Parvibaculum lavamentivorans (pla) |
1 |
| |
|
Photorhabdus luminescens (plu) |
2 |
| |
|
Proteus mirabilis (pmr) |
2 |
| |
|
Pseudomonas mendocina (pmy) |
2 |
| |
|
Pelobacter propionicus (ppd) |
1 |
| |
|
Pseudomonas putida GB-1 (ppg) |
2 |
| |
|
Photobacterium profundum (ppr) |
2 |
| |
|
Pseudomonas putida W619 (ppw) |
1 |
| |
|
Pseudomonas syringae pv. phaseolicola 1448A (psp) |
1 |
| |
|
Phenylobacterium zucineum (pzu) |
1 |
| |
|
Rhizobium etli CIAT 652 (rec) |
7 |
| |
|
Rhizobium etli CFN 42 (ret) |
4 |
| |
|
Ralstonia eutropha JMP134 (reu) |
1 |
| |
|
Rhizobium leguminosarum (rle) |
5 |
| |
|
Rhodopseudomonas palustris BisA53 (rpe) |
1 |
| |
|
Rhodospirillum rubrum (rru) |
1 |
| |
|
Rhodobacter sphaeroides ATCC 17029 (rsh) |
2 |
| |
|
Syntrophus aciditrophicus (sat) |
3 |
| |
|
Shewanella baltica OS155 (sbl) |
1 |
| |
|
Sorangium cellulosum (scl) |
5 |
| |
|
Saccharophagus degradans (sde) |
3 |
| |
|
Shewanella denitrificans (sdn) |
1 |
| |
|
Salmonella enterica subsp. enterica serovar Agona (sea) |
1 |
| |
|
Salmonella enterica subsp. arizonae (ses) |
1 |
| |
|
Syntrophobacter fumaroxidans (sfu) |
3 |
| |
|
Sodalis glossinidius (sgl) |
2 |
| |
|
Shewanella halifaxensis (shl) |
1 |
| |
|
Shewanella sp. ANA-3 (shn) |
1 |
| |
|
Silicibacter pomeroyi (sil) |
1 |
| |
|
Silicibacter sp. TM1040 (sit) |
1 |
| |
|
Sinorhizobium medicae (smd) |
1 |
| |
|
Serratia proteamaculans (spe) |
4 |
| |
|
Sulfurovum sp. NBC37-1 (sun) |
4 |
| |
|
Vibrio cholerae O1 (vch) |
1 |
| |
|
Vibrio fischeri (vfi) |
2 |
| |
|
Vibrio parahaemolyticus (vpa) |
3 |
| |
|
Wolinella succinogenes (wsu) |
1 |
| |
|
Yersinia enterocolitica (yen) |
1 |
| |
|
Yersinia pseudotuberculosis PB1/+ (ypb) |
1 |
| |
Spirochete |
|
49 |
| |
|
Borrelia hermsii (bhr) |
1 |
| |
|
Borrelia turicatae (btu) |
1 |
| |
|
Leptospira biflexa serovar Patoc Patoc 1 (Ames) (lbf) |
2 |
| |
|
Leptospira borgpetersenii L550 (lbl) |
1 |
| |
|
Leptospira interrogans serovar Copenhageni (lic) |
2 |
| |
|
Treponema denticola (tde) |
42 |
| |
Synergistetes |
|
132 |
| |
|
Caldicellulosiruptor saccharolyticus (csc) |
116 |
| |
|
Syntrophomonas wolfei (swo) |
16 |
| |
Tenericutes |
|
32 |
| |
|
Acholeplasma laidlawii (acl) |
29 |
| |
|
Mycoplasma arthritidis (mat) |
2 |
| |
|
Mycoplasma penetrans (mpe) |
1 |
| |
Termite group |
|
7 |
| |
|
Elusimicrobium minutum (emi) |
3 |
| |
|
Uncultured Termite group 1 bacterium phylotype Rs-D17 (rsd) |
4 |
| |
Verrucomicrobia |
|
16 |
| |
|
Akkermansia muciniphila (amu) |
5 |
| |
|
Methylacidiphilum infernorum (min) |
1 |
| |
|
Opitutus terrae (ote) |
10 |
| Eukaryotes |
|
|
79 |
| |
Animals |
|
14 |
| |
|
Anopheles gambiae (mosquito) (aga) |
1 |
| |
|
Caenorhabditis briggsae (cbr) |
2 |
| |
|
Drosophila grimshawi (dgr) |
2 |
| |
|
Drosophila melanogaster (fruit fly) (dme) |
1 |
| |
|
Drosophila pseudoobscura (dpo) |
1 |
| |
|
Gallus gallus (chicken) (gga) |
1 |
| |
|
Mus musculus (mouse) (mmu) |
3 |
| |
|
Nematostella vectensis (sea anemone) (nve) |
1 |
| |
|
Rattus norvegicus (rat) (rno) |
2 |
| |
Fungi |
|
10 |
| |
|
Aspergillus fumigatus (afm) |
3 |
| |
|
Fusarium graminearum (fgr) |
2 |
| |
|
Magnaporthe grisea (mgr) |
3 |
| |
|
Vanderwaltozyma polyspora (vpo) |
1 |
| |
|
Yarrowia lipolytica (yli) |
1 |
| |
Plants |
|
12 |
| |
|
Arabidopsis thaliana (thale cress) (ath) |
1 |
| |
|
Cyanidioschyzon merolae (cme) |
1 |
| |
|
Chlamydomonas reinhardtii (cre) |
2 |
| |
|
Physcomitrella patens subsp. patens (ppp) |
8 |
| |
Protists |
|
43 |
| |
|
Cryptosporidium hominis (cho) |
1 |
| |
|
Cryptosporidium parvum (cpv) |
1 |
| |
|
Dictyostelium discoideum (ddi) |
7 |
| |
|
Entamoeba histolytica (ehi) |
2 |
| |
|
Leishmania major (lma) |
2 |
| |
|
Plasmodium falciparum 3D7 (pfa) |
4 |
| |
|
Plasmodium falciparum Dd2 (pfd) |
2 |
| |
|
Plasmodium falciparum HB3 (pfh) |
5 |
| |
|
Paramecium tetraurelia (ptm) |
2 |
| |
|
Plasmodium yoelii (pyo) |
2 |
| |
|
Tetrahymena thermophila (tet) |
3 |
| |
|
Trichomonas vaginalis (tva) |
12 |
| NULL |
|
|
0 |
| TOTAL |
|
|
3926 |
![[space]](http://compbio.ornl.gov/public/images/bluespacer.gif){kind=small}
![[space]](http://maple.lsd.ornl.gov/common/images/bluespacer.gif){kind=small}