- Genome Home
- Assembly
- Overlap View
Alignment last updated: 11/20/2008 16:50:07
AL844593.6 Mouse DNA sequence from clone RP23-227F18 on chromosome 2 Contains the 5' end of a novel gene, complete sequence [htgs_phase3]
Length: 86,923 bp
AL732441.10 Mouse DNA sequence from clone RP23-142N2 on chromosome 2 Contains a novel gene and a heterogeneous nuclear ribonucleoprotein A1 (Hnrpa1) pseudogene, complete sequence [htgs_phase3]
Length: 194,006 bp
Join evaluation: Alignment count: 1
|
Mismatches = 0, Gaps = 0, Length = 2000 Percent identity = 100% Score = 3965 bits (2000), Expect = 0 2 BAC and 4 Fosmid bridging clones. 2 BAC and 4 Fosmid concordant clones. 0 BAC and 0 Fosmid discordant clones. AL844593.6 >84924 gaattcctcacatagaatagggaaataagtccaatatactactgattgtagagtagtata 84983 AL732441.10 <194006 ............................................................ 193947 AL844593.6 >84984 ctttaaatgaaaatttcttagttttgttttcttgatggctgactgatggccaagagtaaa 85043 AL732441.10 <193946 ............................................................ 193887 AL844593.6 >85044 tactaaagatcctatatttgacataggattaaaagaaaaaatcagtaatatcatggaaca 85103 AL732441.10 <193886 ............................................................ 193827 AL844593.6 >85104 taatgaaaagtagaaggcatatctgatattttgaatcatcatataatgtgtataataaaa 85163 AL732441.10 <193826 ............................................................ 193767 AL844593.6 >85164 tagtaaaatagttatatagtaaaattatttaggttcatgttaatatttgcattgtttaaa 85223 AL732441.10 <193766 ............................................................ 193707 AL844593.6 >85224 ttacattctgtgattaaagtgatagatatttgttacctcagaagctttttatatgtgagt 85283 AL732441.10 <193706 ............................................................ 193647 AL844593.6 >85284 atacataaatttttccctgaatattttatgtctgtaaggtttacgtttcagaagctggta 85343 AL732441.10 <193646 ............................................................ 193587 AL844593.6 >85344 tcagagggacaattacttaaacaatgaagatagtgtggatgcaaggttgggaggtgaatc 85403 AL732441.10 <193586 ............................................................ 193527 AL844593.6 >85404 cctacctggtgctggggttcatcatcatattaaacaatgctgattaataactattatttg 85463 AL732441.10 <193526 ............................................................ 193467 AL844593.6 >85464 gttcctggtgaaatttttgagttgattccatattgtatgactttactccaccaactccca 85523 AL732441.10 <193466 ............................................................ 193407 AL844593.6 >85524 gctatatgtcaatacaactgatcacttctttcataaaatattttctttagtcagatttca 85583 AL732441.10 <193406 ............................................................ 193347 AL844593.6 >85584 agatccttatcttagaatttgtacagcatgtctagccagacgttctgtctgtctgctggt 85643 AL732441.10 <193346 ............................................................ 193287 AL844593.6 >85644 tgttcctttatcctcattggtttttcaccaccattggccatctctcactcccttgacaaa 85703 AL732441.10 <193286 ............................................................ 193227 AL844593.6 >85704 atcatcacagaccatagcatcaaaaaatatttttatcctcagactcccaaccttctgatt 85763 AL732441.10 <193226 ............................................................ 193167 AL844593.6 >85764 ataaaatccaaaaaacttcaaaattaaaaaaaaaatgtttgctaagcatctcaaatgaaa 85823 AL732441.10 <193166 ............................................................ 193107 AL844593.6 >85824 catgtccaagtctggatgttatccttctctttccatacttgttttatgcctgtctttcca 85883 AL732441.10 <193106 ............................................................ 193047 AL844593.6 >85884 tctcagttgaagttagtgacatcttcccaaggactcaaggtgacccccagttacagtcca 85943 AL732441.10 <193046 ............................................................ 192987 AL844593.6 >85944 gtattctttgtactcccctttcatattcaataatcattatattagcaagttcttttgtct 86003 AL732441.10 <192986 ............................................................ 192927 AL844593.6 >86004 ctacagctttaagaactgatcataggacagattctcatagcctctactgctctctggtgt 86063 AL732441.10 <192926 ............................................................ 192867 AL844593.6 >86064 gagtctccattgtttctgcaattgtcacagtggcctcttgactggtatcacgtctactta 86123 AL732441.10 <192866 ............................................................ 192807 AL844593.6 >86124 tattccttacaaacagcatggagaccactgtgattcttctaaatcatagctgacactgta 86183 AL732441.10 <192806 ............................................................ 192747 AL844593.6 >86184 tcagttctctattcaaaatctacacaatggtctatgtttcactcatggaaaacattagtc 86243 AL732441.10 <192746 ............................................................ 192687 AL844593.6 >86244 ttaaaagtggttgtcatggatctacacattttagctcagtcctaatggatggtaactgac 86303 AL732441.10 <192686 ............................................................ 192627 AL844593.6 >86304 tcacaatgcttcattggctgttagcaaacattctgattagcttactttctttttgcaggc 86363 AL732441.10 <192626 ............................................................ 192567 AL844593.6 >86364 acagaaatattaaacagcttcagcaaagcattgctctataacacacatattttcatttta 86423 AL732441.10 <192566 ............................................................ 192507 AL844593.6 >86424 aaaatttctcagccttttcctatttgtatacttttaatagttgagtgtgtatcatgtatt 86483 AL732441.10 <192506 ............................................................ 192447 AL844593.6 >86484 caacttagcgtctttttatttaaacatgttaaataaacattatttattgttaaaaatcaa 86543 AL732441.10 <192446 ............................................................ 192387 AL844593.6 >86544 aacaaaacaaaattgtacttagtaaagaacagatgcctgtatctagaggagaaatcattt 86603 AL732441.10 <192386 ............................................................ 192327 AL844593.6 >86604 taaggagccagagaaacacccagggagctgaaggggactgaagccccatagaaggaacat 86663 AL732441.10 <192326 ............................................................ 192267 AL844593.6 >86664 caataagaactaaccagtacccccagagctccttggaactataccacaaatgaaaggaaa 86723 AL732441.10 <192266 ............................................................ 192207 AL844593.6 >86724 cacatggtggaacttttggctctagctgtatatgtagcagaggatggcctagtcagtcat 86783 AL732441.10 <192206 ............................................................ 192147 AL844593.6 >86784 caatgggaggagaggcccttggtcctgtgaaggttctatgccccagtataagggaatgct 86843 AL732441.10 <192146 ............................................................ 192087 AL844593.6 >86844 aggaccaagaatgggagtgggtaggtttgggagcaggtggaggggggaggggatagggga 86903 AL732441.10 <192086 ............................................................ 192027 AL844593.6 >86904 tttttggaggggaaactagg 86923 AL732441.10 <192026 .................... 192007
Type | Point1 | Point2 | Orient1 | Orient2 | Curator | Comment | Time |
A | 86923 | 192006 | + | - | chenhc | Taxid 10090 chrom 2 Reference assembly | 2008-11-20 16:50:07.613 |
Id | Type | Date | Whodid | Comment |
2707 | ImportOldDb | 09/02/2005 11:24:00 | f_old_db | |
2708 | ReSetShortOvlp | 09/04/2008 10:31:48 | dbo | |
166237 | CreateSwitchPt | 11/20/2008 16:50:07 | chenhc | tpf_builder 1.6 Toolkit wrapper version: built Nov 19 2008 using /netopt/ncbi_tools64/c++.by-date/20081119/GCC401-Release64/lib |
Clone | R | F | ||||
---|---|---|---|---|---|---|
Accession | %id | Position (strand) | Accession | %id | Position (strand) | |
C3H-217B13 | AL732441.10 | 99.17% | pos 95613 (F+) | |||
CH29-12J17 | AL844593.6 | 100% | pos 79773 (F+) | |||
CH29-173D15 | AL732441.10 | 99.18% | pos 91265 (R+) | |||
CH29-174L14 | AL732441.10 | 100% | pos 143229 (F-) | |||
CH29-190C20 | AL844593.6 | 100% | pos 84818 (F-) | |||
CH29-25F24 | AL732441.10 | 99.14% | pos 106729 (R+) | |||
CH29-488B24 | AL732441.10 | 99.37% | pos 182429 (R+) | |||
CH29-489D4 | AL732441.10 | 99.66% | pos 171890 (F+) | |||
CH29-491F18 | AL732441.10 | 100% | pos 87879 (F+) | |||
CH29-541C18 | AL732441.10 | 99.22% | pos 51232 (R-) | |||
CH29-566A19 | AL844593.6 | 99.35% | pos 59369 (R+) | AL732441.10 | 99.26% | pos 20453 (F+) |
CH29-568O23 | AL732441.10 | 100% | pos 25495 (R-) | |||
CH29-598L7 | AL732441.10 | 99.25% | pos 78 (R+) | AL732441.10 | 99.59% | pos 169586 (F-) |
CH29-610E23 | AL844593.6 | 99.55% | pos 52732 (R+) | AL732441.10 | 99.87% | pos 61036 (F+) |
CH29-619B20 | AL732441.10 | 99.72% | pos 100577 (R-) | |||
CH29-99E17 | AL732441.10 | 99.88% | pos 127626 (R+) | |||
RP23-112G22 | AL732441.10 | 99.08% | pos 25159 (F+) | |||
RP23-21N12 | AL732441.10 | 99.02% | pos 51244 (F-) | |||
RP24-141I2 | AL844593.6 | 99.55% | pos 5364 (R-) | |||
RP24-163J4 | AL732441.10 | 99.76% | pos 126302 (F-) | |||
RP24-237O7 | AL732441.10 | 99.12% | pos 161079 (F+) | |||
RP24-269J2 | AL732441.10 | 99.75% | pos 53459 (R-) | |||
RP24-381B11 | AL844593.6 | 100% | pos 69595 (R-) | |||
RP24-82C13 | AL732441.10 | 99.59% | pos 125110 (R+) |
Clone | R | F | ||||
---|---|---|---|---|---|---|
Accession | %id | Position (strand) | Accession | %id | Position (strand) | |
WI1-1143A16 | AL732441.10 | 100% | pos 185037 (R+) | AL844593.6 | 100% | pos 50990 (F+) |
WI1-1143C16 | AL732441.10 | 100% | pos 185037 (R+) | AL844593.6 | 100% | pos 50994 (F+) |
WI1-1273F17 | AL844593.6 | 100% | pos 1854 (R+) | AL844593.6 | 99.71% | pos 40536 (F-) |
WI1-1379C18 | AL732441.10 | 99.83% | pos 55296 (R+) | AL732441.10 | 99.53% | pos 92780 (F-) |
WI1-1578B21 | AL844593.6 | 99.65% | pos 32739 (R-) | |||
WI1-1599E7 | AL844593.6 | 100% | pos 67752 (R+) | AL732441.10 | 100% | pos 173268 (F+) |
WI1-1648O19 | AL844593.6 | 100% | pos 24079 (F-) | |||
WI1-1678H10 | AL844593.6 | 99.46% | pos 16548 (R+) | AL844593.6 | 99.77% | pos 57424 (F-) |
WI1-16N5 | AL732441.10 | 99.81% | pos 107033 (R-) | AL732441.10 | 100% | pos 70231 (F+) |
WI1-175B22 | AL732441.10 | 99.69% | pos 18426 (F-) | |||
WI1-1780F16 | AL732441.10 | 100% | pos 132069 (R-) | |||
WI1-2023E6 | AL844593.6 | 99.47% | pos 66684 (F-) | |||
WI1-2085G5 | AL732441.10 | 99.25% | pos 7431 (R+) | AL732441.10 | 99.8% | pos 47118 (F-) |
WI1-2085O23 | AL732441.10 | 99.85% | pos 7431 (R+) | AL732441.10 | 99.85% | pos 47118 (F-) |
WI1-2144I10 | AL844593.6 | 100% | pos 22690 (F-) | |||
WI1-2174K4 | AL732441.10 | 99.26% | pos 79868 (R-) | |||
WI1-2311O10 | AL844593.6 | 99.59% | pos 19824 (R+) | AL844593.6 | 100% | pos 52947 (F-) |
WI1-2351L17 | AL732441.10 | 100% | pos 179065 (R-) | AL732441.10 | 99.83% | pos 139265 (F+) |
WI1-2612J12 | AL732441.10 | 99.61% | pos 63268 (R-) | AL732441.10 | 100% | pos 24491 (F+) |
WI1-2622C14 | AL732441.10 | 99.76% | pos 79291 (R+) | AL732441.10 | 100% | pos 121622 (F-) |
WI1-2622J13 | AL732441.10 | 99.83% | pos 79286 (R+) | AL732441.10 | 100% | pos 121622 (F-) |
WI1-2795O15 | AL732441.10 | 100% | pos 111736 (F+) | |||
WI1-2863P22 | AL732441.10 | 100% | pos 32307 (R-) | |||
WI1-288J4 | AL844593.6 | 99.77% | pos 73910 (R-) | AL844593.6 | 100% | pos 33213 (F+) |
WI1-289N11 | AL844593.6 | 100% | pos 50308 (R-) | AL844593.6 | 100% | pos 13501 (F+) |
WI1-311F4 | AL732441.10 | 100% | pos 70268 (F+) | |||
WI1-335G9 | AL732441.10 | 100% | pos 170003 (R-) | AL732441.10 | 99.57% | pos 127362 (F+) |
WI1-428A7 | AL844593.6 | 99.84% | pos 62050 (R+) | AL732441.10 | 100% | pos 175522 (F+) |
WI1-482P19 | AL844593.6 | 99.27% | pos 37085 (R-) | |||
WI1-490J20 | AL732441.10 | 100% | pos 182452 (R-) | AL732441.10 | 99.83% | pos 139638 (F+) |
WI1-513E11 | AL732441.10 | 100% | pos 90428 (R-) | AL732441.10 | 100% | pos 53136 (F+) |
WI1-630P9 | AL732441.10 | 99.59% | pos 16408 (F-) | |||
WI1-719F7 | AL844593.6 | 100% | pos 50308 (R-) | AL844593.6 | 100% | pos 13499 (F+) |
WI1-797O1 | AL732441.10 | 99.82% | pos 21132 (R-) | |||
WI1-908J11 | AL732441.10 | 100% | pos 9268 (R-) |