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GEO accession:
Sample GSM116993
Query DataSets for GSM116993
Status
Public on Sep 30, 2006
Title
NA18506_Nsp_COMM
Sample type
genomic
Source Name
DNA was obtained from NIGHS Human Genetic Cell Repository
Organism(s)
Homo sapiens
Characteristics
Gender: Male Cell lot number: 1
Biomaterial provider
Coriell NA18506
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA18506
Extracted molecule
genomic DNA
Label
Biotin
Description
Hapmap samples used for identifying variable copy number regions in the genome
Data processing
Genotyes reported by dynamic modeling algorithm
Submission date
Jun 29, 2006
Contact name
Fan Shen
E-mail(s)
Fan_Shen@affymetrix.com
Phone
408-731-5762
Organization name
Affymetrix, Inc
Street address
3420 Central Expressway
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Platform ID
GPL3718
Series (1)
GSE5173
Global variation of copy number in the human genome_COMM
Data table header descriptions
ID_REF
Affymetrix probe set ID
VALUE
Genotypes
DETECTION P-VALUE
Detection pValue
MedianS
Median signal
RAS1
Relative allele signal for data in the first probe group
RAS2
Relative allele signal for data in the second probe group
Data table
ID_REF
VALUE
DETECTION P-VALUE
MedianS
RAS1
RAS2
SNP_A-1780520
BB
0.023438
23.735
0.000000
0.043902
SNP_A-1780618
AB
0.007813
14.485
0.464777
0.411458
SNP_A-1780632
AA
0.007813
7.812
0.969251
0.871744
SNP_A-1780654
AA
0.007813
16.494
0.963127
0.987037
SNP_A-4192495
BB
0.007813
12.620
0.104651
0.034871
SNP_A-4192498
AB
0.230469
0.819
0.255605
0.396729
SNP_A-1780732
BB
0.015625
16.853
0.000000
0.040132
SNP_A-1780848
BB
0.062500
8.682
0.000000
0.209866
SNP_A-1780985
BB
0.007813
10.699
0.000000
0.000000
SNP_A-1781022
AA
0.007813
12.455
1.000000
1.000000
SNP_A-1781076
AB
0.007813
9.477
0.682796
0.532727
SNP_A-1781249
AB
0.007813
8.978
0.569767
0.498011
SNP_A-1781276
AB
0.039063
11.035
0.496343
0.538889
SNP_A-1781302
BB
0.023438
11.699
0.164130
0.050907
SNP_A-1781510
AA
0.007813
23.273
0.984122
1.000000
SNP_A-4192564
BB
0.007813
10.230
0.053077
0.122449
SNP_A-1781614
AA
0.007813
21.601
1.000000
0.918114
SNP_A-1781633
AA
0.007813
20.165
1.000000
1.000000
SNP_A-1781764
BB
0.007813
12.213
0.122951
0.000000
SNP_A-1781829
BB
0.007813
11.074
0.022982
0.105820
Total number of rows:
262264
Table truncated, full table size
12970 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM116993.CEL.gz
41.3 Mb
(ftp)
(http)
CEL
GSM116993.raw.txt.gz
24.6 Mb
(ftp)
(http)
TXT
Raw data provided as supplementary file
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