Reference SNP(refSNP) Cluster Report: rs2518032

Reference SNP(refSNP) Cluster Report: rs2518032

refSNP ID: rs2518032
Organism:	human (Homo sapiens)
Molecule Type:	Genomic
Created/Updated in build:	100/129
Map to Genome Build:	36.3

Allele
Variation Class:	SNP: single nucleotide polymorphism
RefSNP Alleles:	C/G
Ancestral Allele:	Not available
Clinical Association:	unknown

HGVS Names

Links

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss3529095 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs2518032 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	Validation Status	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Freq Warning	Ancestral Allele	Success Rate
ss3529095	SC_JCM\|AB032151.1_10696		fwd/T	C/G	tctagttcatctatatagatatatatcata	atggcatatatgatatatatatgtcagatc	09/24/01	10/10/03	100	Genomic			unknown

Fasta sequence (Legend)

 GAAGAATGTG ATCAAAGACT CATGAGGGCA AGTGTAAAAG ACAAAAGCAC TTGTTTCATA
 GGGAACCCAC TGGTGACATT TGAGATATCA ACATACAAAT CCATCATACA AAAAGGAAAA
 GTAATGAAAG ACTGTGAAAA TTATCAGtat ttatgtgtat atgtatattt tctagttcat
 ctatatagat atatatcata
 S
 atggcatata tgatatatat atgtcagatc aataagaaaa catacatata catgtatGCA
 TTTTTGGTAT TAATTAGGAA ACTAGTTCTT TTGTCTTTCA GACCTGCCCT CATGAGTCTT
 TGACCAAATT CTTGATTTCT GGCACGATTT GATGCCCAAG GCTCAAAGAA TCTTACCTCA
 TCCCAGCTCT GAAATTGGCC

GeneView

GeneView via analysis of contig annotation: AKR1C2 aldo-keto reductase family 1, member C2 (dihydrodiol dehydrogenase 2; bile acid binding protein; 3-alpha hydroxysteroid dehydrogenase, type III)

View variations for gene:

Include clinically associated:

in gene region cSNP has frequency double hit

Group
Label

Contig->mRNA

Gene Model (contig mRNA transcript) Color Legend

HuRef

NW_001837930->NM_001354

function

HuRef

NW_001837930->NM_205845

function

Group label	Contig-->mRNA-->Protein	Contig position	mRNA orientation	Function


HuRef	NW_001837930->NM_001354->NP_001345	396729	reverse	intron

HuRef	NW_001837930->NM_205845->NP_995317	396729	reverse	intron

GeneView: no link established by BLAST analysis of mRNA sequences

Integrated Maps:

NCBI MapViewer: See all two hits of rs2518032 on the NCBI human genome map
!WARNING: Several map positions found! The map position is found by blasting with the contig sequences.

Chromosome	Contig accession	Contig position	Chromosome position	Hit orientation	Contig Allele	Assembly Type	Group label	Contig label	Neighbor SNP	SNP_flank position
10	NW_001837930.2	396729	4946870	minus	C	alt_assembly_8	HuRef	HuRef	view	200
10	NW_924584.1	4978516	4978516	minus	C	alt_assembly_1	Celera	Celera	view	200
10	NT_077567.3	4953930	5003930	plus	G	ref_assembly	reference	reference	view	200
10	NT_077567.3	4978515	5028515	minus	C	ref_assembly	reference	reference	view	200
Un	NW_921365.1	8209	unplaced	plus	G	alt_assembly_1	Celera	Celera	view	200

NCBI Resource Links

Submitter-Referenced
GenBank
AB032151 L32592

dbSNP Blast Analysis
GenBank HTGS Finished:
AL391427.9 AL713867.6

Population Diversity

There is no frequency data.

Validation Summary:

Validation status	Marker displays Mendelian segregation	PCR results confirmed in multiple reactions	Homozygotes detected in individual genotype data
	UNKNOWN	UNKNOWN	UNKNOWN

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Revised: May 25, 2006 1:38 PM .