Legend : mRNA The GenBank/DDBJ/EMBL accession.
Method The method or program, or GOLD.
#Exon The number of exons in the alignment.
Length The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector.
From The first base aligned, in coordinate on the accession as it is in GenBank.
Aligned The total number of bases aligned, not the last base of the alignment!
#err The number of point differences from the genome, as measured by Smith Waterman.
Chrom The chromosome number (or NT_ contig if unmapped).
from The beginning of the alignment on the genome, in basepairs, calling 1 the first base.
to The end of the alignemnt. If End < From, the cDNA aligns on the minus strand.

mRNA Method #Exon Length From Aligned #err Chrom from to
AK000081 Gold_good 19 2518 1 2518 33 1 1602510 1582469
AK000081 Splign 19 2518 1 2518 34 1|NT_077964 126269 51289
AK021585 Gold_good 1 2111 1 2111 20 1 142606360 142604250
AK021585 Splign 1 2111 1 2111 22 1|NT_077949 128335 130445
AK021666 Gold_good 1 1702 1 1702 16 1 728752 727050
AK021666 UCSC 1 1702 1 1702 18 5 180843469 180845171
AK021675 AceView 1 2518 1 2518 14 17 44089639 44087124
AK021675 Gold_good 1 2518 1 2518 12 17 44861401 44863917
AK022182 AceView 2 2893 1 2893 20 17 34661653 34664557
AK022182 Gold_good 3 2893 1 2892 15 17 34749717 34766135
AK024602 AceView 1 1375 1 1375 7 7 74577935 74579308
AK024602 Gold_good 1 1375 1 1375 6 7 71939182 71937809
AK024602 Gold_good 1 1375 1 1375 6 7 74521890 74523265
AK025818 AceView 1 1536 1 1536 9 1 141752024 141750489
AK025818 Gold_good 1 1536 1 1536 8 1 203665302 203666837
AK026312 AceView 2 1175 1 1175 8 17 19196853 19198185
AK026312 Gold_good 2 1175 1 1175 6 17 19262990 19261661
AK026436 Gold_good 4 2753 1 2752 14 15|NT_079551 5255 9435
AK026436 Splign 4 2753 1 2752 15 15 96242365 96246545
AK026462 Gold_good 5 801 3 799 4 X 120441 113605
AK026462 Gold_good 5 801 3 799 4 Y 120441 113605
AK026887 Gold_good 1 854 1 854 5 1 37836801 37835948
AK026887 Gold_good 1 854 1 854 5 1|NT_077945 121455 120602
AK054980 Gold_good 1 2297 1 2297 11 8 8059433 8061731
AK054980 Gold_good 1 2297 1 2297 11 8 12369039 12366742
AK056233 Gold_good 13 2351 20 2332 12 7 449854 570007
AK056233 JBIRC 12 2351 42 2310 11 7|NT_079515 177219 120887
AK056835 AceView 1 2441 1 2441 34 X 61335475 61333035
AK056835 Gold_good 1 2441 1 2441 33 X 61216402 61218842
AK074528 Gold_good 5 2134 1 2134 28 X 121309 112204
AK074528 Gold_good 5 2134 1 2134 28 Y 121309 112204
AK074778 Gold_good 8 2520 1 2520 11 15 82618656 82587832
AK074778 UCSC 8 2520 1 2520 13 15 83507762 83476909
AK090701 AceView 2 1849 1 1849 11 17 36731135 36729265
AK090701 AceView 2 1849 1 1849 11 17|NT_079558 173934 175804
AK090701 Gold_good 2 1849 1 1849 10 17|NT_079559 126302 128173
AK092630 Gold_good 2 2485 1 2485 10 17 36492861 36496361
AK092630 Gold_good 2 2485 1 2485 10 17 36710829 36707329
AK093281 AceView 5 1760 1 1760 11 2 131649593 131660058
AK093281 Gold_good 5 1760 1 1760 10 2 131291137 131280667
AK093722 AceView 1 2141 1 2141 11 9 40842311 40840171
AK093722 Gold_good 1 2141 1 2141 10 9 41510384 41512524
AK094156 AceView 1 3302 1 3302 21 1 145628516 145625217
AK094156 Gold_good 1 3302 1 3302 19 1 142087759 142084460
AK094156 Gold_good 1 3302 1 3302 19 1 142410853 142407552
AK094644 Gold_good 2 2253 1 2252 12 9 44058230 44064520
AK094644 Gold_good 2 2253 1 2252 12 9 44309555 44303265
AK095183 Gold_good 10 1997 1 1997 25 1 19206 4223
AK095183 UCSC 11 1997 1 1997 23 15 100237086 100252075
AK095183 UCSC 11 1997 1 1997 24 2 114436836 114451804
AK096159 AceView 8 2042 1 2042 11 9 65434877 65408620
AK096159 Gold_good 7 2042 1 2042 10 9 65195953 65169615
AK096908 Gold_good 1 1376 1 1376 18 10 46566704 46565332
AK096908 Gold_good 1 1376 1 1376 18 10 47632905 47634277
AK096998 Gold_good 1 2059 1 2059 10 X 2177147 2179210
AK096998 Gold_good 1 2059 1 2059 10 Y 2177147 2179210
AK097346 Gold_good 1 1740 1 1740 18 X 110459 112199
AK097346 Gold_good 1 1740 1 1740 18 Y 110459 112199
AK097551 Gold_good 16 2329 1 2329 12 15 32544267 32535470
AK097551 UCSC 16 2329 1 2329 13 15 32398046 32389249
AK097872 Gold_good 6 2235 1 2235 10 X 121695 113606
AK097872 Gold_good 6 2235 1 2235 10 Y 121695 113606
AK098138 Gold_good 7 2041 1 2041 12 8 12089000 12077016
AK098138 NEDO 8 2041 1 2041 11 8 12304230 12292288
AK122833 AceView 10 3389 1 3389 16 17 36671597 36662729
AK122833 Gold_good 10 3389 1 3389 14 17 36721823 36712955
AK122959 Gold_good 3 1940 1 1940 9 1 1174546 1176745
AK122959 Gold_good 3 1940 1 1940 9 1|NT_079486 73527 75724
AK123481 AceView 1 2269 1 2269 12 16 21412624 21410360
AK123481 AceView 1 2269 1 2269 12 16 22482028 22484292
AK123481 Gold_good 1 2269 1 2269 10 16 21844904 21842636
AK124014 AceView 1 2188 1 2188 11 Un|NT_079616 65653 63466
AK124014 Gold_good 1 2188 1 2188 10 3 196570003 196567816
AK124496 Gold_good 2 2924 1 2924 26 8 7091511 7087776
AK124496 UCSC 2 2924 1 2924 28 8 7600056 7596320
AK125084 AceView 1 1842 1 1842 12 5 69010627 69008786
AK125084 Gold_good 1 1842 1 1842 11 5 69569910 69571751
AK125209 Gold_good 1 2055 1 2055 21 16 30301930 30299876
AK125209 UCSC 1 2055 1 2055 22 16 29563524 29561470
AK126147 Gold_good 1 1988 1 1988 17 X 1301533 1299554
AK126147 Gold_good 1 1988 1 1988 17 Y 1301533 1299554
AK126237 Gold_good 1 1990 1 1980 12 3 46446014 46444034
AK126237 Gold_good 1 1990 1 1980 12 3|NT_079509 132513 130533
AK127414 AceView 1 1960 1 1960 15 1 119915984 119914020
AK127414 Gold_good 1 1960 1 1960 14 1 143000498 143002451
AK129567 AceView 9 1859 1 1859 10 22 17059796 17035359
AK129567 Gold_good 9 1859 1 1859 9 22 18981382 18956686
AK129679 AceView 1 888 1 888 11 17 45113670 45114558
AK129679 Gold_good 1 888 1 888 10 17 44896175 44897063
AK130562 Gold_good 9 1485 1 1485 12 15 80431443 80444448
AK130562 Gold_good 9 1485 1 1485 12 15 80817968 80830973
AK130705 AceView 1 2049 1 2049 18 5 70275086 70277134
AK130705 AceView 1 2049 1 2049 18 8|NT_079526 155621 157669
AK130705 Gold_good 1 2049 1 2049 16 5 69544141 69546189
AK130982 Gold_good 1 501 1 501 6 13 23327135 23326635
AK130982 UCSC 2 501 1 501 5 13 22966281 22966792
AL049250 Gold_good 1 2481 1 2481 16 16 22489900 22492380
AL049250 JBIRC 1 2481 5 2477 15 16 21404744 21402268
AL049250 Splign 1 2481 1 2481 17 16 21837028 21834530
AL050127 Gold_good 3 1686 1 1686 22 X 1149065 1147117
AL050127 Gold_good 3 1686 1 1686 22 Y 1149065 1147117
AL050202 Gold_good 4 1169 1 1169 5 1 1195702 1194128
AL050202 Gold_good 4 1169 1 1169 5 1|NT_079486 6535 8106
AL117485 Gold_good 6 3561 2 3560 44 22 17214654 17221746
AL117485 Gold_good 6 3561 2 3560 44 22 19967375 19974467
AL133089 Gold_good 1 1244 4 1241 8 10 80606867 80605627
AL133089 Splign 1 1244 4 1241 10 10 80926758 80925516
AL136789 Gold_good 5 2247 1 2247 9 2 131292315 131286494
AL136789 Gold_good 5 2247 1 2247 9 2 131648414 131654224
AL137714 AceView 8 3496 1 3496 57 1 19346 4270
AL137714 Gold_good 9 3496 1 3496 52 2 114436701 114451760
AL157501 Gold_good 5 831 1 831 8 X 244370 237153
AL157501 Gold_good 5 831 1 831 8 Y 244370 237153
AL832085 Gold_good 1 2950 1 2950 29 1 142607199 142604250
AL832085 Splign 1 2950 1 2950 30 1|NT_077949 127496 130446
AL832872 Gold_good 2 723 1 723 7 5 177547824 177549150
AL832872 Splign 2 723 1 723 9 5 175469526 175470874
AL832872 Splign 2 723 1 723 9 5 177323221 177321873
AL833005 Gold_good 1 2743 1 2743 20 17|NT_078102 64785 62056
AL833005 NCBI 34.3 1 2743 1 2743 22 17|NT_078102 67403 70159
AL833339 Gold_good 9 3190 1 3190 17 16 69761265 69774075
AL833339 Gold_good 9 3190 1 3190 17 16 69984195 69997002
BC000719 Gold_good 13 2781 1 2781 16 2 242897863 242934009
BC000719 Gold_good 13 2781 1 2781 16 2|NT_079503 54918 91065
BC005363 AceView 4 416 2 415 6 X 48223851 48228591
BC005363 AceView 4 416 2 415 6 X 48233407 48238147
BC005363 Gold_good 4 416 2 415 4 X 48204750 48209477
BC005363 Gold_good 4 416 2 415 4 X 48242960 48285908
BC009032 Gold_good 6 1075 1 1075 11 X 244625 237155
BC009032 Gold_good 6 1075 1 1075 11 Y 244625 237155
BC017177 Gold_good 9 4076 1 4076 17 10 46146746 46121621
BC017177 Gold_good 9 4076 1 4076 17 10 48347080 48321979
BC018908 AceView 3 995 1 995 5 7 101855947 101848144
BC018908 Gold_good 3 995 1 995 5 7 101756886 101748984
BC019875 Gold_good 1 671 1 671 6 2 243017444 243018114
BC019875 Gold_good 1 671 1 671 6 2|NT_079503 173848 174518
BC022085 Gold_good 4 854 6 854 4 2 110441582 110462463
BC022085 UCSC 4 854 6 854 5 2 110994906 110974010
BC022796 AceView 3 856 1 856 11 19 54238937 54240379
BC022796 Gold_good 3 856 1 856 9 19 54219382 54217939
BC024278 Gold_good 9 4076 1 4076 17 10 46146746 46121621
BC024278 Gold_good 9 4076 1 4076 17 10 48347080 48321979
BC024914 AceView 5 529 1 529 4 X 48223880 48231209
BC024914 AceView 5 529 1 529 4 X 48233436 48240761
BC024914 Gold_good 5 529 1 529 3 X 48242989 48250320
BC024914 Gold_good 5 529 1 529 3 X 48252547 48259870
BC024914 UCSC 5 529 1 529 5 X 48262096 48269417
BC027338 AceView 2 1207 1 1207 16 9 63661005 63659684
BC027338 Gold_good 2 1207 1 1207 15 9 62641931 62643252
BC027921 Exonerate 10 1935 1 1935 25 1 19206 4270
BC027921 Gold_good 11 1935 1 1935 21 2 114436836 114451757
BC029274 Gold_good 2 1638 1 1638 13 X 153684863 153687159
BC029274 Gold_good 2 1638 1 1638 13 Y 50279027 50281323
BC032353 Gold_good 4 1639 1 1639 9 1 1737 4272
BC032353 Gold_good 4 1639 1 1639 9 15 100254560 100252025
BC032774 Gold_good 9 709 12 706 4 15 32397948 32392059
BC032774 Gold_good 9 709 12 706 4 15 32544169 32538280
BC033765 Gold_good 1 1168 22 1158 6 17 66728038 66729199
BC033765 Splign 1 1168 22 1158 7 17|NT_079563 13701 12540
BC033980 AceView 4 816 6 816 6 2 110994906 110974050
BC033980 Gold_good 4 816 6 816 5 2 110441582 110462423
BC035932 AceView 3 1833 8 1833 11 5 70398797 70416586
BC035932 Gold_good 3 1833 1 1839 9 5 69855948 69873772
BC035932 JBIRC 3 1833 1 1839 10 5 69129782 69111965
BC038185 AceView 3 995 1 995 5 7 101855947 101848144
BC038185 Gold_good 3 995 1 995 5 7 101756886 101748984
BC038553 Gold_good 1 2542 3 2539 34 20 25815645 25813108
BC038553 Splign 1 2542 3 2539 35 20 25991534 25994072
BC039251 Gold_good 4 3181 1 3181 16 9 131555531 131600552
BC039251 Gold_good 4 3181 3 3179 15 9|NT_079538 78518 123890
BC039395 Gold_good 1 1480 1 1479 10 9 63518859 63520337
BC039395 Splign 1 1480 1 1479 12 9 43267262 43268739
BC041025 AceView 3 995 1 995 5 7 101855947 101848144
BC041025 Gold_good 3 995 1 995 5 7 101756886 101748984
BC041705 AceView 1 1409 1 1409 20 22 19968481 19967073
BC041705 Gold_good 1 1409 1 1409 18 22 21983371 21984777
BC042832 Gold_good 1 1206 1 1206 18 16 21420607 21419386
BC042832 Gold_good 1 1206 1 1206 18 16 22474044 22475249
BC044608 Gold_good 3 1516 1 1516 17 7 63953331 63945175
BC044608 NCBI 34.3 3 1516 1 1516 18 7 64647386 64639214
BC047753 Gold_good 7 1179 1 1179 8 7 71888785 71924113
BC047753 Gold_good 7 1179 1 1179 8 7 74600316 74564981
BC054477 Gold_good 3 954 5 954 7 2 110392558 110400321
BC054477 Gold_good 3 954 5 954 7 2 111043931 111036168
BC056864 Gold_good 10 1593 1 1593 7 7 101773552 101738832
BC056864 UCSC 10 1593 1 1593 7 7 101872600 101838006
BC057819 Gold_good 3 823 1 823 4 1 37701613 37702771
BC057819 Gold_good 3 823 1 823 4 1|NT_077945 142518 141360
BC058012 Gold_good 4 545 1 544 3 17 19277753 19259606
BC058012 Splign 4 545 1 544 4 17|NT_079555 18707 36408
BC061517 AceView 3 736 1 736 5 1 142412052 142371875
BC061517 Gold_good 3 736 1 736 3 1 142231804 142191646
BC062579 AceView 13 1963 1 1963 27 1|NT_077964 57441 50945
BC062579 Gold_good 13 1963 1 1963 25 1 1588617 1582122
BC063429 Gold_good 13 1873 1 1873 9 X 289624 237155
BC063429 Gold_good 13 1873 1 1873 9 Y 289624 237155
BC063459 Gold_good 11 2256 1 2256 32 1 19791 4272
BC063459 UCSC 12 2256 1 2256 30 2 114436256 114451755
BC063470 AceView 7 1574 1 1574 14 15 100237083 100252027
BC063470 Gold_good 7 1574 1 1574 13 1 19209 4270
BC063503 AceView 1 1236 1 1236 9 7 101852970 101851735
BC063503 Gold_good 1 1236 1 1236 7 7 101557009 101558244
BC063555 Gold_good 10 2144 1 2144 14 1 9099 4269
BC063555 Gold_good 10 2144 1 2144 14 15 100247193 100252030
BC063619 AceView 1 1557 1 1557 22 22 19968630 19967073
BC063619 AceView 1 1557 1 1557 22 22 21304148 21305705
BC063619 Gold_good 1 1557 1 1557 20 22 21983222 21984777
BC063631 Gold_good 1 985 1 985 7 22 18764765 18763778
BC063631 Gold_good 1 985 1 985 7 22 20158544 20157557
BC063682 Gold_good 7 1220 1 1220 16 X 153683922 153687203
BC063682 Gold_good 7 1220 1 1220 16 Y 50278086 50281367
BC063682 Splign 7 1220 1 1220 17 1 7502 4225
BC064371 Gold_good 5 1308 1 1308 15 9 7511 4520
BC064371 UCSC 6 1308 1 1308 14 2 114448758 114451757
BC064615 AceView 1 1149 1 1149 6 5 70008089 70006941
BC064615 Gold_good 1 1149 1 1149 5 5 69526489 69527637
BC064615 Gold_good 1 1149 1 1149 5 5 70278711 70279877
BC064615 Gold_good 1 1149 1 1149 5 8|NT_079526 159246 160412
BC064615 Splign 1 1149 1 1149 6 5 69249875 69248709
BC065740 Gold_good 1 1598 2 1597 16 7 75720116 75721726
BC065740 Gold_good 1 1598 4 1595 15 7 76218223 76219816
BX538190 AceView 5 2642 1 2642 12 9 42973346 42990109
BX538190 Gold_good 5 2642 1 2642 11 9 40228852 40245640
BX538190 Gold_good 5 2642 1 2642 11 9|NT_078078 177125 160336
BX647292 Gold_good 2 1945 1 1945 10 X 1301506 1299554
BX647292 Gold_good 2 1945 1 1945 10 Y 1301506 1299554
BX647532 Gold_good 2 5460 1 5460 29 5 68981011 68986476
BX647532 NEDO 2 5460 1 5460 30 5 69599510 69594038
BX647899 AceView 2 2911 10 2902 14 15 82783055 82780128
BX647899 Gold_good 1 2911 10 2902 15 15 82630980 82633878
BX647918 Gold_good 1 1815 1 1815 19 1 367306 369122
BX647918 Gold_good 1 1815 1 1815 19 1 702140 700324
BX647918 Gold_good 1 1815 1 1815 19 11 118125 116309
BX647918 UCSC 1 1815 1 1815 20 5 180863720 180865537
BX647918 UCSC 1 1815 1 1815 21 7 61323 59507
BX649081 Gold_good 4 2484 1 2484 14 1 18707342 18667399
BX649081 Gold_good 4 2484 1 2484 14 1|NT_079499 67228 27289