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BUILD 129
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Reference SNP(refSNP) Cluster Report: rs169411          
refSNP ID: rs169411
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:79/129
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:A/G
Ancestral Allele:Not available
Clinical Association:unknown
HGVS Names
NM_007202.2:c.878-3714G>A
NT_010718.15:g.19451748C>T
Links

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss1651300 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs169411 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss225871KWOK|OVLP-000621-144021fwd/TA/Ggggcgggggctgaccccccacctccctcccgacggggcggctggccgggcgggggctgac06/30/0010/10/0379Genomic96 %
ss1263610KWOK|OVLP-000804-240413fwd/TA/Ggggcgggggctgaccccccacctccctcccgacggggcggctggccgggcgggggctgac09/02/0010/10/0386Genomic96 %
ss1651300KWOK|OVLP-000925-557762fwd/TA/Ggggcgggggctgaccccccacctccctcccgacggggcggctggccgggcgggggctgac10/04/0010/10/0387Genomic96 %
ss90554662BCMHGSC_JDW|JWB-1009300rev/BC/Tgtcagcccccgcccggccagccgccccgtcgggagggaggtggggggtcagcccccgccc02/26/0802/29/08129Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs169411|allelePos=4358|totalLen=6821|taxid=9606|snpclass=1|alleles='A/G'|mol=Genomic|build=129
 TTCTGTAATT GTAATACATT TATTGTTTTT AGAAACTGTC TTTGCTTTAG TGGTAATTTT
 CAATAAAAAT AGAAATAGCA GTGGAGTTAT TAAAAGAGCA TTAGTTACAT TTTTCCCTTT
 TTCATTATCT TCAAATATTA TATATAGTAA GTTTGACCTT TTTAAAATGT ATACTTGTAT
 CAGTTTTAAC ACATACATAG ATTCCTGTAA CTGTCACCAC TATAAGGGTA AAGAACAGTT
 AGTTCcttca cctttgaagt caagccccac ctctatccca acacttggca accgctgatc
 tttctccgtc tcaatagctt tgccttttct cttttttttt cttatttttt tttttgagac
 agcgtcttgc tctgtcgccc gagctggagt gcagtgaggc aatctcggct cactgcaacc
 tccgcctcct gggttcaagc agttctcctg ccttagcctc cctagtagct gggattatag
 gcacgcacca ccacacccgg ctgatttttt tgtattttta gtagaaatgg ggtttcacca
 tgttggccag gctggtctca aactcttgac ctcaagtgat ccacctgcct cggcctccca
 aagtgctggg attacaggcg tgagccactg tgcccAATCA GGACTTTTTT tttttaaatt
 tacattcaac ttgtcatttt tttcttgtat ggattgtgcc ttcagagtca cacctaagag
 ccctttgcct aagcaaaggt catgaagatt ttctcatatg tttcctttta aaagtattgt
 ggttggccag gtgccatggc ttatgcctgt aatctcagca ctttgagaag ctgaggtggg
 cagattacga ggtcaggaga tcgagaccat cctggctaat gcggtgaaac cccatctcta
 ctaaaaatac aaaaaaaaaa aaaaattagc cgggcgtggt ggcgggcacc tgtagtccca
 gctacttgag aggttgaggc aggagaatag tgtgaacccg ggaggtggag cttgcagtga
 gccgagatcg cgccactgca ctccagcctg ggcaacacag tgagactcca tctcaaaaaa
 aaaaaaaaag tattatggtt ttacacttta cgtttagata tatatctttt ttgagttaat
 gtcgtataag tatgagggtt acgtcagatt ttttgttttt tgtttatttt tacatatgga
 tgtctagttg ttctaatacc atttgttgaa aagacaacct ttactccatt gaattgcctt
 tgtacttttg ccatatttgt ctaggcctgt ttttggactc ctttttctgt ttcatgatgt
 gtgtgtctat tcctttgtta ataccacatg gtcttaatta ctgtatagta agtcttaaaa
 ttgggtaatg ctggccttat aaaacgaatt gggaagtttt tatttttact cttatttcca
 ttttctagaa gagattgtgt agaattggtg tcatttcttc tttagatatt tggttgaatt
 gggaagtgat gccatctggg cctagggttt tgttttttgt gtgtgagaca gagtctcact
 tctgtcaccc aggttggagt gcagtggtga gatcttggct tactgcaacc tctgcctccc
 aggttcaagt tatcctcctg cctcagcctc ccaaatagct gggattacaa gcgtgtgcca
 ccatgcccga ctaatttttg tatttttaat gcagacaggg tttcaccatg ttagccaagc
 tggtctcgaa cttgtgacct caagtgatta gcccaccttg gcctcccaaa gtgttaggat
 tatagatgtg agccaccgtg cctggcaggg gcctagggtt ttctttttca gagtatttta
 aactatgaat tcagattatt taatagatat aggactattt aagttatctg tttcttcttg
 agtgaatttt tactgtagtt tatggccttt gagtaattaa ttgtattgaa ttgtcaaatt
 tatgagcgtg taattattta tagcatttcg ggtttgtagt ggtatccctc ttttattcct
 ggtgttggca attgtgtctt gtttttcttt gtcagattgt atagggattt attagtcttt
 tcaaagaact agcttttgtt ttgatttttc tgttgttttg ttttcaattt tattgatttt
 ctgctcttta ttatttcttt tctattattt ctgcttgctt tgggtttatt ttactctttt
 ttttttctcc aagttgctta aagtagaaac ttagatttct ggtttgagac ctttcttttc
 taagataagc atttaatact gtaaatttcc ttctaaccac tgctttagtt acacccccac
 aaattctggt attttgaact gagcacaaat gaaatgttct aatttccctt gaatcttatt
 cttttaccaa tgaattattt agaaatatgt tatttagttt gcaagcaatt ggagactttt
 ttcctgttat ttttctacca tttatttctc atttcattat attatggtca gagaatatat
 tttgaatgat ttcatttatt aatttttaaa aataacatta aaaaattttt taaaatgtga
 atataccaca tacagtataa agattgtaca ttctgttttt ggacagtttt ctataaatgt
 caagttgatt tagttggtta atgatggtgt tcagtttttc tttattcttg ctgatacttt
 gtatgcagtt atatcacttt attactcaga agagtgttga actttccaac tacaattttt
 ttttccaatt ttactttcag ctctatctgg ttttgcttca tgtattttga ggctctgttg
 ttaggtgtgt acacattcag gatgatatct tctgggtgaa ttgcctgttt tatcattatg
 taattccctc tttatggtaa ttttccttgt tctaagatca gaaatatctg ttgtccaatt
 tatatagaca ctgcagcttt catttgatta gtgcttgcat ggcatatctt tttccatttt
 tttacttttg atctaccttt ataattctat ttaaaggggg cttcttgtag gcagcatata
 gttgggtagt gttatttatt tatttattta tttatttatt tatttattta ttgagacaga
 gttttgctct tgttgcccaa gctggagtgc agtggtgcaa tcctggctta ccacaacctc
 cacctcctgg gttgcagtga ttctcctgcc tcagcctccc aagtagctgg gattacaggc
 acgcgcacca tgcctggctg attttttgta tttttagtag aaacggattt tcaccatgtt
 agccaggctc gtcttgaact cctgacctca ggtgatccac ctgctttggc ctcccaaagt
 gctgggatta caggcgtgag ccactgcacc cggctgagtc atgttatttt taatcttttc
 tcacaataca gggtttttgt tggtaaattt aattatttta atataaattt tagtataatt
 ATTTACATTA AATGTAACTG TTGCACTGGG GTATTTATAA TGTGtaaata taattattgg
 tattaatata attatattac tcataataat attaatatCT TTGGATTTAG ATTACCAGTT
 TAGTATATGt ttttctgttt ctccctcttt gatttcccct tttttgcttt tttttttttt
 ttaattctta ttttttttta gtatttgttg atcattcttg ggtgtttctt ggagaggggg
 atttggcagg gtcataggac aatagttgag ggaaggtcag cagataaaca tgtgaacaag
 gtctctggtt ttcctagaca gaggaccctg cggccttctg cagtgtttgt gtccctgggt
 acttgagatt agggagtggt gatgactctt aacgagcatg ctgccttcaa gcatctgttt
 aacaaagcac atcttgcacc acccttaatc catttaaccc tgagtggtaa tagcacatgt
 ttcagagagc agggggttgg gggtaaggtt atagattaac agcatcccaa ggcagaagaa
 tttttcttag tacagaacaa aatggagtct cccatgtcta cttctttcta cacagacaca
 gtaacaatct gatctctctt tcttttcccc acatttcccc cttttctatt cgacaaaact
 gccatcgtca tcatggcccg ttctcaatga gctgttgggt acacctccca gacggggtgg
 cagctgggca gaggggctcc tcacttccca gatggggcag ccgggcagag gcgcccccca
 cctcccagac ggggcagtgg ccgggcggag gcgcccccca cctccctccc ggatggggcg
 gctggccggg cgggggctga ccccccacct ccctccc
 R
 gacggggcgg ctggccgggc gggggctgac cccccacctc cctcccagat ggggcggctg
 gccgggcggg ggctgccccc cacctccctc ccggacgggg cggctgccgg gctgaggggc
 tcctcacttc gcagaccggg cggctgccgg gcggaggggc tcctcacttc tcagacgggg
 cggccgggca gagacgctcc tcacctccca gatggggtgg cggtcgggca gagacactcc
 tcagttccca gacggggtcg cggccgggca gaggcgctcc tcccatccca gacggggcgg
 cggggcagag gtggtcccca catctcagac gatgggctgc cgggcagaga cactcctcac
 ttcctagacg ggatggcagc cgggaagagg tgctcctcac ttcccagacg gggcggccgg
 tcagaggggc tcctcacatc ccagacgatg ggcggctagg cagagacgct cctcacttcc
 cggacggggt ggcggccggg cagaggctgc aatctcggca ctttgggagg ccaaggcagg
 cggctgggaa gtggaggttg tagggagctg agatcacgcc actgcactcc agcctgggca
 acattgagca ttgagtgagc gagactccgt ctgcaatcct ggcacctcgg gaggccgagg
 caggcagatc actcgcggtc aggagctgga gaccagcccg gccaacacag cgaaaccccg
 tctccaccaa aaaatgcaaa aaccagtcag gtgtggcggc gtgcgcctgc aatcccaggc
 actctgcagg ctgaggcagg agaatcaggc agggaggttg cagtgagccg agatggcggc
 agtacagtcc agcctcggct ttcacaactt tggtggcatc agagggagac cggggagagg
 gagagggaga cgagggagag cccctttttt gctttctttt GGATTATTTG AATTTTTCCT
 TAAatttatt tatcttactt atttatttat ttttttGagt gattctcctg ccacagctcc
 caagtagctg ggactgcagg catgtgccac tacacccagc taattttttt gtatttttag
 tagagacagg gtttcaccat attggccagg ctggtcttga actcttgacc tcaagtgatc
 cacctgcctc ggcctcccaa agtgctggga ttacaggcgt gagccaccat gccctgccTT
 TTTCTAGAAT TTATATATTG AGTTCTTGAT TGTATCTTTT TATGTAGGCT TTTTAGTGGC
 TTCTCTAGGA ATTACAATAT ACATACTTTT CACAGTGTAC TCACATTTAA TATTTTGTAA
 CTTCAAGTGG AATGTAGAAA ACTTAACCAC CATAAAAATA GAACTAGGGA TGAGGTTAAA
 AAAGAGAGAG AAAAGAAATG TAATAAAGAT TTAATAACAC CGtttttttt tttttttctc
 tttttttttt gagacagagt ctctctttct gttaccaggc tggagtgcag tggcgtgatc
 ttggctcact gcaacctccg cctcctgggt tcaagtgttt ctcctgcctc agcctactga
 gtagctggga ttacaggtgc gcgccaccat gcccagctaa tttttgtatt tttagtagag
 acggtttcac tgtgttggcc aggatggtct cgatttcttg accttgtgat tcgctctcct
 cagcctccca aagtgctggg attacaggcg tgagccaccg cgcccggctA AGTCTTTAAA
 TATTTTTTTG ACATTGCACT Ttttctcttt tccttctagg attttagtaa cccaaatgtt
 agttttgtta ttgtttggca ggttcctgag gctttcctta cttctttaaa tttttttttc
 ctgttgttca gcttcgaaaa tttctattca tctgtcttca aattcactgg ttctttcccg
 ttatttccat tctgttattg agtctttgta gtgaatttta aattttgttt attatgtttt
 ttagttctaa aattttcttt ttttgtgtat gtcttatact ttgctcctga aactcttatt
 tgtttcagga gtgatcttat ttcttagagc atggttttag tagctactta aaatttgttt
 tatcatccca gcatatgtgt cctcttgatt gtcttttctc ttgtgagata atgggatttt
 ctggttcttt atatgacaat taattttgga ttgtatcttg gacagtttga cttacgttac
 atgattctga atcttgttta aatcctgtgg aaaatattga agtttttgct ttaacaagca
 gttgacctag ttaggttcag tccacaaatt ctaagcagca ttctgtcggc tctggttcca
 tcatcagttc agttttgtat cttATCTGCT TATGTGCCTT TCTGTGTCCA GTCTGGGACC
 TGGCCAATGG TCAGGTCCCA AAGCCTTTGT ACACTTTTAG AAGCAGGGCC ATGCACACCC
 AGC

  GeneView back to top
GeneView via analysis of contig annotation: AKAP10 A kinase (PRKA) anchor protein 10
View variations for gene:
Include clinically associated: in gene region cSNP has frequency double hit
Group
Label		Contig->mRNAGene Model (contig mRNA transcript) Color Legend
referenceNT_010718->NM_007202
function
"
Group
label		Contig-->mRNA-->ProteinContig
position		mRNA
orientation		mRNA
pos		FunctiondbSNP
allele		Protein
residue		Codon
pos		Amino acid
pos
referenceNT_010718->NM_007202->NP_00913319451748reverseintron

GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  rs169411 maps exactly once on NCBI human chromosome 17
ChromosomeContig
accession		Contig
position		Chromosome
position		Hit
orientation		Contig
Allele		Assembly
Type		Group
label		Contig
label		Neighbor
SNP		SNP_flank
position
17NW_926617.1714184^71418517267826^17267827minus-alt_assembly_1CeleraCeleraview4340..4433
17NW_001838423.2383359^38336019233309^19233310plus-alt_assembly_8HuRefHuRefview4340..4433
17NT_010718.151945174819795124minusCref_assemblyreferencereferenceview4357

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
AC005730.1 AC022286.9
dbSNP Blast Analysis

  Population Diversity back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation		PCR results confirmed
in multiple reactions		Homozygotes detected
in individual genotype data
UNKNOWNUNKNOWNUNKNOWN

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Revised: May 25, 2006 1:38 PM .