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West Coast Atlas: Background

About the Atlas
Initial Digitizing
Processing for Digital Atlas
Table 1. Marine mammals
Table 2. Fishes
Table 3. Invertebrates
Table 4. Life stage
Table 5. Relative abundance
For More Information
Contributors
References

ABOUT THE ATLAS

The West Coast of North America Data Atlas was the fourth in a set of hardcopy atlases, published by NOAA's strategic assessment program during the late 1980’s, covering the major coastal areas of the nation. This series is part of a national program characterizing potential conflicts among users of the U.S. Exclusive Economic Zone (EEZ) and adjacent coastal areas. The goal of the strategic assessment program is to communicate this information to decision makers and public and private institutions involved in resource-use issues.

Two preliminary volumes covering the study area region from the Bering Sea south to the Gulf of California were published. The Marine Mammal volume presents information on the spatial and temporal distributions of 33 species. The Invertebrate and Fish volume contains 66 species. A map, description, vertical profile, and scale drawing are provided for each species. The map shows important areas by life stage, abundance, time period, and commercial and recreational use. The description is a written summary of scientific knowledge on topics such as life history attributes and catch statistics. For the digital atlas, all 99 species were included in the digitized geographic files.

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INITIAL DIGITIZING

Each physical plate (side of a sheet of paper) in the original atlas contains the map for one or more species. In digitizing these plates, the species depicted on each plate were treated separately by assigning a species code to each. In general, these codes follow the order in the atlas index for each section, but this rule is not inviolate. The life history for each species was divided into submaps, each representing presence/absence of a (1) life stage, (2) abundance level, and (3) season (the applicable time of year). Separate data sets were maintained for the northern and southern parts of the maps, because they were separate pieces of paper. Care was taken to do proper edge matching between the pages, but there was no formal check to ensure match. Areas were digitized as priority polygons so they could be clipped by a land mask. Thus, the details of the species polygons over land are arbitrary. The exceptions to this principle are the salmonoid species files (Pink, Chum, Coho, Sockeye, and Chinook Salmon and Steelhead) and the Striped Bass because the adult and spawning life stages for these species have polygons over land showing their occurrences in rivers and streams, which were not digitized, and thus, are not included in this digital atlas.

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PROCESSING FOR DIGITAL ATLAS

Source digital arcs and topology were first converted into MapInfo layer files and edited. The species files were joined to their northern and southern halves, if applicable, and clipped to retain only the water portions of the polygons using a 1:2,000,000 land coverage, named 'Land' [wcna_land.shp]. Some additional life stages were added according to the map notes. After edits and additions were complete, the species files were exported to ArcView SHP files. Each file represents one unique species and is named using a species code (as listed in the tables below). For example, the file name for species 35, Pacific Herring, is 35.shp. Once the files were converted, another quality check was performed on the life history code [LHC] for valid entries. Generally, the species codes were assigned according to the order in which they exist in the original atlas. Thus there is an internal grouping of similar species. Because the adult and spawning life stages of salmonoid species and Striped Bass occur in rivers and streams, these seven species files were clipped to the land boundary, which eliminated these life stages from the digital file.

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The following tables identify the species included in the digital atlas, along with their species code:

Table 1. Marine mammals

Code Common Name Latin Name
1 Sea Otter Enhydra lutris
2 Northern Fur Seal Callorhinus ursinus
3 Northern Sea Lion Eumetopius jubatus
4 California Sea Lion Zalophus californianus
5 Northern Elephant Seal Mirounga angustirostris
6 Harbor Seal Phoca vitulina richardsi
7 Killer Whale Orcinus orca
8 Northern Right Whale Dolphin Lissodelphis borealis
9 Bottlenose Dolphin Tursiops truncatus
10 Long Beaked Dolphin Delphinus delphis
11 Short Beaked Dolphin Delphinus delphis
12 Pacific White-sided Dolphin Lagenorhynchus obliquidens
13 Short-finned Pilot Whale Globicephala macrorhynchus
14 Harbor Porpoise Phocoena phoecoena
15 Gulf Porpoise Phocoena sinus
16 White Whale Delphinapterus leucas
17 Sperm Whale Physeter macrocephales
18 Cuvier's Beaked Whale Ziphius carirostris
19 Baird's Beaked Whale Berardius bairdi
20 Stejneger's Beaked Whale Mesoplodon stejnegeri
21 Hubb's Beaked Whale Mesoplodon carlhubbsi
22 Gray Whale Eschrichtius robustus
23 Right Whale Balaena glacialis
24 Humpback Whale Megaptera novaeangliae
25 Minke Whale Balaenoptera acutorostrata
26 Sei Whale Balaenoptera borealis
27 Bryde's Whale Balaenoptera edeni
28 Fin Whale Balaenoptera physalus
29 Blue Whale Balaenoptera musculus
30 Risso's Dolphin Grampus griseus
31 False Killer Whale Pseudorca crassidens
32 Dall's Porpoise Phocoenoides dalli
33 Striped Dolphin Stenella coeruleoalba
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Table 2. Fishes

Code Common Name Latin Name
34 Spiny Dogfish Squalus acanthias
35 Pacific Herring Clupea harengus pallasi
36 Pacific Sardine Sardinops sagax
37 Northern Anchovy Engraulis mordax
38 Pink Salmon Oncorhynchus gorbuscha
39 Chum Salmon Oncorhynchus keta
40 Coho Salmon Oncorhynchus kisutch
41 Sockeye Salmon Oncorhynchus nerka
42 Chinook Salmon Oncorhynchus tshawytscha
43 Steelhead Oncorhynchus mykiss
44 Pacific Cod Gadus macrocephalus
45 Walleye Pollock Theragra Chalcogramma
46 Pacific Hake Merluccius productus
47 Jack Mackerel Trachurus symmetricus
48 Albacore Thunnus alalunga
49 Bluefin Tuna Thunnus thynnus
50 Chub Mackerel Scomber japonicus
51 Kelp Bass Paralabrax clathratus
52 Striped Bass Morone saxatilis
53 Pacific Bonito Sarda chiliensis
54 California Halibut Paralichthys californicus
55 Pacific Baracuda Sphyraena argentea
56 Yellowtail Seriola lalandei
57 Pacific Ocean Perch Sebastes aluthus
58 Widow Rockfish Sebastes entomelas
59 Sablefish Anoplopoma fimbria
60 Lingcod Ophiodon elongatus
61 Atka Mackerel Pleurogrammus monopterygiu
62 Pacific Halibut Hippoglossis stenolepis
63 English Sole Parophrys vetulus
64 Flathead Sole Hippoglossoides elassodon
65 Petrale Sole Eopsetta jordani
66 Starry Flounder Platichthys stellatus
67 Dover Sole Microstomus pacificus
68 Arrowtooth Flounder Atheresthes stomias
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Table 3. Invertebrates

Code Common Name Latin Name
69 Weathervane Scallop Patinopecten caurinus
70 Pacific Oyster Crassostrea gigas
71 Fat Gaper Clam Tresus capax
72 Pacific Gaper Clam Tresus nuttallis
73 Pacific Razor Clam Siliqua patula
74 California Jackknife Clam Tagelus californianus
75 Pacific Littleneck Clam Protothaca staminea
76 Manila Clam Tapes philippinarum
77 Pismo Clam Tivela stultorum
78 Pacific Geoduck Clam Panope abrupta
79 Pink Abalone Haliotis corrugata
80 Black Abalone Haliotis cracherodii
81 Green Abalone Haliotis fulgens
82 Pinto Abalone Haliotis kamtschatkana
83 Red Abalone Haliotis rufescens
84 White Abalone Haliotis sorensoni
85 Flat Abalone Haliotis walallensis
86 Market Squid Loligo opalescens
87 Red Squid Berryteuthis magister
88 Northern Pink Shrimp Pandalus borealis
89 Ocean Pink Shrimp Pandalus jordani
90 Sidestripe Shrimp Pandalopsis dispar
91 Ridgeback Prawn Sicyonia ingentis
92 Coonstripe Shrimp Pandalus hypsinotus
93 Spot Shrimp Pandalus platyceros
94 Red King Crab Paralithodes camtschatica
95 Blue King Crab Paralithodes platypus
96 Golden King Crab Lithodes aequispina
97 Bairdi Tanner Crab Chionoectes bairdi
98 Dungeness Crab Cancer magister
99 California Spiny Lobster Panulirus interruptus
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The life history/abundance code [LHC] has three digits and is generated as the combination of the Life stage code and the Abundance code. The [LHC] is also broken out into separate fields as [Life_stage] and [Abundance] respectively. These fields are used in subsetting the data. For example, a [LHC] value of 101 signifies an adult area in high abundance. The corresponding [Life stage] code is 10 and the [Abundance] code is 1. The following tables define the values for each of the code components (not all life stages are present in the WCNA atlas):


Table 4. Life stage

LHC Code Life Stage Description
100 10 Adult Area
110 11 Adult Haulout
120 12 Male Adult Area
130 13 Female Adult Area
150 15 Subadult Area
200 20 Spawning Area
210 21 Calving/Pupping Area
220 22 Nesting/Breeding Area *
230 23 Nesting Colony *
240 24 Rookery *
250 25 Mating Area
260 26 Breeding Area *
270 27 Release of Young Area
280 28 Parental Foraging Area
290 29 Maternal Denning Area *
400 40 Juvenile Area
410 41 Young Juvenile Area
420 42 Older Juvenile Area
600 60 Commercial Fishing/Harvest Area
610 61 Foreign Commercial Fishing Area
700 70 Recreational Fishing Area
800 80 Occurrence *
810 81 Occasional Occurrence *
900 90 Range *
920 92 Stocks
* Not present in digital version of WCNA atlas
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Table 5. Relative abundance

Code
Abundance Level
Abundance Level Description
0
1
Average (Area)
1
2
High (Major Area)
2
3
Highest (Major Concentration)


During the GIS operations, all three lookup tables (species_desc.dbf, stage_desc.dbf, and abund_desc.dbf) are linked to the data through the code field [Code] to provide textual names for menu selection.

Seasonality is encoded as a 13-character string [Season], with one character for each month and a 13th character to indicate presence during all months of the year. Any character in the string other than "-" or "blank" indicates the theme is active for that month. The preferred values for each month in sequence are [JFMA5678SONDY]. An internal check, if the 13th character is active (a "Y"), then the preceding 12 characters should also be active.

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FOR MORE INFORMATION

For questions regarding the digitization of the data or the application development, please contact the Special Projects office. For questions relating to the West Coast Atlas content, the atlas itself in hardcopy should be consulted, especially the text material on each plate, which expands on the map presentations.


CONTRIBUTORS

Contributors for the digital product include Peter Grose, Holly Baun, Heidi Johnson, Marilyn King, Tracy Gill, and Lisa Butler.


REFERENCES

Strategic Assessment Branch and Northwest and Alaska Fisheries Center, 1990: West Coast of North America Strategic Assessment: Data Atlas. Invertebrate and Fish volume. Pre-publication edition. Rockville, MD: National Oceanic and Atmospheric Administration. 112 pp.

Strategic Assessment Branch and Northwest and Alaska Fisheries Center, 1988: West Coast of North America Strategic Assessment: Data Atlas. Marine Mammals volume. Pre-publication edition. Rockville, MD: National Oceanic and Atmospheric Administration. 58 pp.

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Revised March 28, 2006       http://westcoastatlas.nos.noaa.gov /background.html