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Actinobacillus actinomycetemcomitans Search Results

Record: 1 of 1  
MiniMap IGR0548 IGR0554 IGR0555 IGR0552 IGR0556 IGR0550 IGR0558 IGR0549 IGR0553 IGR0557 IGR0551 AA00853 ftsL, - AA00846 lpcA,gmhA,isn, - AA00860 artQ, - AA00855 mraZ, - AA00849 artM, - AA00854 artI, - AA00856 artP, - AA00858 mraW, - AA00847 cstA, - AA00851 mfd, - AA00861 AA00852 AA00853 ftsL, - AA00846 lpcA,gmhA,isn, - AA00860 artQ, - AA00855 mraZ, - AA00849 artM, - AA00854 artI, - AA00856 artP, - AA00858 mraW, - AA00847 cstA, - AA00851 mfd, - AA00861 AA00852 lpcA,gmhA,isn, - AA00860 artQ, - AA00855 mraZ, - AA00849 artM, - AA00854 artI, - AA00856 artP, - AA00858 mraW, - AA00847 cstA, - AA00851 mfd, - AA00861 AA00853 ftsL, - AA00846 AA00852


Gene ID:AA00855

DNA Molecule Name:
1  

GenBank ID:


Gene Name:
artQ  

Definition:
arginine ABC transporter, permease protein

Cellular Location:
Inner membrane, Cytoplasm [Evidence]

Gene Start:
590383

Gene Stop:
589724

Gene Length:
660

Molecular Weight*:
24165

pI*:


Net Charge*:


EC:
 

Functional Class:
Transport and binding proteins; ABC Superfamily: membrane spanning permease  

Gene Ontology:
Biological process
  GO:0006810    transport

Cellular component
  GO:0009276    1-2nm peptidoglycan-based cell wall
  GO:0016020    membrane
  GO:0016021    integral to membrane

Molecular function
  GO:0005215    transporter activity


Pathway: pathway table

Secondary Evidence:
Nishijyo,T., Park,S.M., Lu,C.D., Itoh,Y. and Abdelal,A.T.
Molecular characterization and regulation of an operon encoding a
system for transport of arginine and ornithine and the ArgR
regulatory protein in Pseudomonas aeruginosa
J. Bacteriol. 180 (21), 5559-5566 (1998)
PubMed: 9791103

Wissenbach U, Six S, Bongaerts J, Ternes D, Steinwachs S, Unden G.
A third periplasmic transport system for L-arginine in Escherichia coli: molecular characterization of the artPIQMJ genes, arginine binding and transport.
Mol Microbiol. 1995 Aug;17(4):675-86.
PMID: 8801422

Wissenbach,U., Keck,B. and Unden,G.
Physical map location of the new artPIQMJ genes of Escherichia
coli, encoding a periplasmic arginine transport system
J. Bacteriol. 175 (11), 3687-3688 (1993)
PubMed: 8501075



Comment:


View in HOMD Genome Viewer

Blast Summary:  PSI-Blast Search


Top Blast Hits:  Updated monthly
Click here to view the entire PsiBlast results.
 gi|145635027|ref|ZP_01790733.1|  arginine ABC transporter pe...   359   7e-98
 gi|145633092|ref|ZP_01788824.1|  arginine transporter permea...   358   1e-97
 gi|148826212|ref|YP_001290965.1|  arginine transporter perme...   357   3e-97
 gi|145631225|ref|ZP_01786998.1|  arginine ABC transporter pe...   356   4e-97
 gi|145637071|ref|ZP_01792734.1|  arginine transporter permea...   355   7e-97
 gi|42628865|ref|ZP_00154418.1|  COG4215: ABC-type arginine t...   355   9e-97
 gi|145641226|ref|ZP_01796806.1|  arginine transporter permea...   355   9e-97
 gi|148828331|ref|YP_001293084.1|  arginine ABC transporter p...   355   1e-96
 gi|16273100|ref|NP_439334.1|  arginine ABC transporter perme...   352   8e-96
 gi|68249725|ref|YP_248837.1|  arginine transport system perm...   352   9e-96


InterPro Summary:  InterProScan

InterPro
IPR000515
Family
Binding-protein-dependent transport systems inner membrane component
PF00528 [9-215]T 9.8e-17 PF00528 BPD_transp_1 BPD_transp_1
PS50928 [13-206]T 17.616 PS50928 ABC_TM1 ABC_TM1
InterPro
IPR010065
Domain
Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine
TIGR01726 [5-108]T 2.3e-08 TIGR01726 HEQRo_perm_3TM: amino acid ABC transporter, HEQRo_perm_3TM: amino acid ABC transporter,
noIPR
unintegrated
unintegrated
signalp [1-39]? NA signalp signal-peptide signal-peptide
tmhmm [19-37]? NA tmhmm transmembrane_regions[47-67]? NA tmhmm transmembrane_regions[81-101]? NA tmhmm transmembrane_regions[122-142]? NA tmhmm transmembrane_regions[186-206]? NA tmhmm transmembrane_regions transmembrane_regions


COGS Summary:  COGS Search
BeTs to 15 clades of COG0765
COG name: ABC-type amino acid transport system, permease component
Functional Class: E
The phylogenetic pattern of COG0765 is a----z--vd-lbcefgh-nujxi--
Number of proteins in this genome belonging to this COG is
Blocks Summary:  Blocks Search


 ProDom Summary:  Protein Domain Search

Residues 12 to 71 match (5e-13) PD:PD001196 which is described as PROTEOME COMPLETE PERMEASE ABC TRANSMEMBRANE TRANSPORTER ACID AMINO TRANSPORTER SYSTEM

Paralogs:  Local Blast Search

AA00855 is paralogously related to AA00854 (arginine transport system permease protein) (2e-29), AA01525 (amino acid ABC transporter, permease component) (8e-28) and AA01050 (iron(III) ABC transporter, permease protein) (8e-04).


Pfam Summary:  Pfam Search

Residues 9 to 215 (E-value = 8.6e-17) place AA00855 in the BPD_transp_1 family which is described as Binding-protein-dependent transport system inner membrane component (PF00528)


 Structural Feature(s):
Feature Type  Start  Stop
Uncleavable N-term signal seq  
1  
39
Transmembrane  
21  
37
Transmembrane  
50  
66
Transmembrane  
84  
100
Transmembrane  
190  
206

Top PDB Hits:


Gene Protein Sequence:
MFSDYFSLMFTAALMTLGLAVCSLVFGLILGMLFAVLEANRFVGKPMAVF
VALLRGLPEILVVLLVYFGSSEVVEMITGDYIEFGAFGCGVFALSLIFAA
YASQTLRGAIQAIAKGQWESGAALGLSKGYTFIHIVMPQVWRHALPGLSN
QWLVLLKDTALISLIGVDDLMRQAQLINTNTHQPFTWYGIAALIYLLVTL
VSQVGIRKLELRFTRFERGV

Gene Nucleotide Sequence:  Sequence Viewer
ATGTTTTCCGATTATTTTTCTTTAATGTTTACCGCAGCCCTAATGACCTT
GGGGCTTGCGGTTTGTTCGTTGGTGTTTGGGCTGATTTTGGGCATGCTGT
TCGCCGTGCTGGAAGCAAACCGCTTTGTGGGCAAACCGATGGCGGTGTTT
GTCGCCTTATTGCGTGGCTTGCCTGAAATTCTGGTGGTGTTATTGGTGTA
TTTCGGTTCCAGCGAAGTGGTGGAAATGATCACCGGCGATTACATTGAAT
TCGGTGCGTTCGGTTGCGGTGTGTTCGCCCTTTCCCTTATTTTTGCGGCT
TATGCTTCACAAACGTTGCGCGGTGCCATTCAGGCGATTGCTAAAGGACA
ATGGGAATCCGGCGCGGCATTAGGCTTGAGTAAAGGCTATACTTTCATTC
ATATCGTGATGCCGCAAGTATGGCGCCACGCGCTGCCGGGCTTGAGCAAT
CAATGGTTGGTGTTGTTGAAAGATACTGCACTCATTTCTTTAATCGGGGT
GGATGATTTAATGCGTCAGGCACAGCTGATTAACACCAATACCCATCAGC
CTTTCACGTGGTATGGCATTGCTGCCTTGATTTACTTACTGGTTACTTTA
GTGAGCCAGGTGGGTATCCGTAAATTAGAACTGCGTTTTACCCGCTTTGA
AAGAGGAGTG

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