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Finding cDNAs
UGID:375570     UniGene Os.24165     Oryza sativa (rice)   Os05g0169100 Links
Os05g0169100 (Os05g0169100)
SELECTED PROTEIN SIMILARITIES
Comparison of sequences in UniGene with selected protein reference sequences. The alignments can suggest function of a gene.
Reference ProteinSpeciesId(%)Len(aa)
NP_001054759.1 Os05g0169100 O. sativa 100.0 218
NP_174013.1 60S ribosomal protein L10 (RPL10B) A. thaliana 91.7 218
XP_001694428.1 ribosomal protein L10, component of cytosolic 80S ribosome and 60S large subunit C. reinhardtii 83.3 227
NP_956321.1 ribosomal protein L10 D. rerio 79.7 207
XP_001480054.1 PREDICTED: similar to QM protein M. musculus 79.6 206
NP_001080666.1 ribosomal protein L10 X. laevis 79.6 206
NP_006004.1 ribosomal protein L10 H. sapiens 79.6 206
NP_013176.1 Protein component of the large (60S) ribosomal subunit, responsible for joining the 40S and 60S subunits; regulates translation initiation; has similarity to rat L10 ribosomal protein and to members of the QM gene family; Rpl10p S. cerevisiae 78.2 206
NP_495707.1 Ribosomal Protein, Large subunit family member (rpl-10) C. elegans 76.8 207
NP_651954.2 Qm CG17521-PA, isoform A D. melanogaster 74.2 221
XP_331356.1 hypothetical protein N. crassa 73.8 206

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
Note: Highly represented (2.1 pct) in cDNA library dbEST:14232, Rice root plasmid cDNA library (14ROOT).
GEO profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: mixed; callus; stem; root; leaf; panicle; flower; whole plant; unspecified tissue; other; seed
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 5
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (7)

X64621.1 O.sativa R22 mRNA PA
D21313.1 Oryza sativa SS501 mRNA for Wilm's tumor suppressor, partial sequence P
AK066128.1 Oryza sativa Japonica Group cDNA clone:J013052E20, full insert sequence P
AK062208.1 Oryza sativa Japonica Group cDNA clone:001-046-H08, full insert sequence P
AK120033.1 Oryza sativa Japonica Group cDNA clone:002-188-A02, full insert sequence P
NM_001061294.1 Oryza sativa (japonica cultivar-group) Os05g0169100 (Os05g0169100) mRNA, complete cds P
CT832822.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA020E17, full insert sequence P

EST sequences (10 of 772) [Show all sequences]

D43094.1 Clone AD588 callus P
D43200.1 Clone SS022 callus
D43569.1 Clone SS609 callus
D43570.1 Clone SS610 callus
C27052.1 Clone C50845_2A callus P
C27074.1 Clone C50917_1A callus P
C27464.1 Clone C51940_1A callus P
C27758.1 Clone C52790_1A callus P
C27798.1 Clone C52878_1A callus P
C28033.1 Clone C53752_1A callus P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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