Submitter records for this RefSNP Cluster

NCBI Assay ID	Handle|Submitter ID	Validation Status	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Freq Warning	Ancestral Allele	Success Rate
ss1490998	TSC-CSHL|TSC0249816		fwd/B	C/T	aaaagtaaagttgcaaagcaatacaggtta	gtgatacaatttatagtaaatacacactca	09/07/00	04/07/04	86	Genomic			95 %
ss16880230	CSHL-HAPMAP|CSHL-HuAA-200402.chr2.NT_005058.14_2211128		rev/T	A/G	tgagtgtgtatttactataaattgtatcac	taacctgtattgctttgcaactttactttt	02/17/04	03/04/04	120	Genomic			unknown
ss17685407	CSHL-HAPMAP|CSHL-HuCC-200402.chr2.NT_005058.14_2211128		rev/T	A/G	tgagtgtgtatttactataaattgtatcac	taacctgtattgctttgcaactttactttt	02/19/04	03/04/04	120	Genomic			unknown
ss20117595	CSHL-HAPMAP|CSHL-HuFF-200402.chr2.NT_005058.14_2211128		rev/T	A/G	tgagtgtgtatttactataaattgtatcac	taacctgtattgctttgcaactttactttt	02/21/04	03/04/04	120	Genomic			unknown
ss24637314	PERLEGEN|afd1325956		rev/T	A/G	tgagtgtgtatttactataaattgtatcac	taacctgtattgctttgcaactttactttt	08/10/04	09/13/04	123	Genomic			unknown
ss41570364	ABI|hCV3258268		rev/T	A/G	tgagtgtgtatttactataaattgtatcac	taacctgtattgctttgcaactttactttt	07/17/05	07/17/05	126	Genomic			unknown
ss66376140	AFFY|SNP_A-2030171		fwd/B	C/T	aaagcaatacaggtta	gtgatacaatttatag	10/29/06	08/14/07	127	Genomic			unknown
ss66878923	ILLUMINA|HumanHap550v1.1_rs1026076		fwd/B	C/T	aaaagtaaagttgcaaagcaatacaggtta	gtgatacaatttatagtaaatacacactca	11/14/06	11/14/06	127	Genomic			unknown
ss66966972	ILLUMINA|HumanHap650Yv1.0_rs1026076		fwd/B	C/T	aaaagtaaagttgcaaagcaatacaggtta	gtgatacaatttatagtaaatacacactca	11/14/06	11/14/06	127	Genomic			unknown
ss68082784	ILLUMINA|HumanHap250Sv1.0_rs1026076		fwd/B	C/T	aaaagtaaagttgcaaagcaatacaggtta	gtgatacaatttatagtaaatacacactca	12/06/06	12/07/06	127	Genomic			unknown
ss68827999	PERLEGEN|PGP01325956		rev/T	A/G	tgagtgtgtatttactataaattgtatcac	taacctgtattgctttgcaactttactttt	01/30/07	08/14/07	127	Genomic			unknown
ss70474595	ILLUMINA|HumanHap550v3.0__rs1026076		rev/T	A/G	tgagtgtgtatttactataaattgtatcac	taacctgtattgctttgcaactttactttt	04/20/07	03/29/08	130	Genomic			unknown
ss70997135	ILLUMINA|HumanHap650Yv3.0_rs1026076		fwd/B	C/T	aaaagtaaagttgcaaagcaatacaggtta	gtgatacaatttatagtaaatacacactca	04/23/07	04/23/07	127	Genomic			unknown
ss75674347	ILLUMINA|ILMN_Human_1M_rs1026076		fwd/B	C/T	aaaagtaaagttgcaaagcaatacaggtta	gtgatacaatttatagtaaatacacactca	08/28/07	08/29/07	129	Genomic			unknown
ss76106261	AFFY|AFFY_6_1M_SNP_A-2030171		fwd/B	C/T	aaagcaatacaggtta	gtgatacaatttatag	08/28/07	08/30/07	129	Genomic			unknown
ss77111880	HGSV|Cor12156_SNV_20070510.chr2_133435851		rev/T	A/G	tgagtgtgtatttactataaattgtatcac	taacctgtattgctttgcaactttactttt	10/09/07	10/11/07	129	Genomic			unknown
ss83664186	KRIBB_YJKIM|KHS513897		fwd/B	C/T	aaaagtaaagttgcaaagcaatacaggtta	gtgatacaatttatagtaaatacacactca	12/04/07	12/05/07	130	Genomic			unknown
ss91352425	BCMHGSC_JDW|JWB-1308881		rev/T	A/G	tgagtgtgtatttactataaattgtatcac	taacctgtattgctttgcaactttactttt	02/26/08	03/01/08	129	Genomic			unknown

Fasta sequence   (Legend)

 Cataaatggt tgtggtgcat ttgataattc atttgaaaat gataataatt ggagccctat
 ctcacataag gaaatataaa ttttacatgg gttaataccc taaatgtaca agaaattatg
 taaatactga agaaaacact gaagactttt tgttttaatt ttagtgtatt ggatattttc
 tcaagcaagg cataaaacca agaagtcata caggaaagga ctgtttgact aaatcaaaat
 tttaaaattt tggttgatca aatattctat atacctaggc aaaataggca atagactagg
 agaaaaggtt tttgacatac aaataaagga ctgaaacagg aagcatgtaa ttccatgaat
 tagaatttct tatgagttaa aatgaagtaa gacaagagta gaaacagtta acagttaaca
 gttaacagga gaggaaacac aaatggctga tgaacttatg aaagacactc aCCTCACTAC
 CAGCCAGTTA GCATATTAAA ACACAAGATA ACCTTTTTTC ACCAAATAGA CTGGCATAAA
 TAAAAGTGTG ATGATAATAT ATAAGACTTT ATAATACATT TTGAAGTACC CTCTACTCAA
 AGGTGGAGAA AAACAATCTC ATACACAAAT GTTGAAAATG TAAACCGcat gcgtttctgg
 caaggttata aataagtaca gcaattcttg ggtggcagtt tagtagtaaa agcatctact
 ctttgactta gcaattccac atatccatat ttatagaaac cgtcattcat gtgcagaggg
 tgacatgtga gacactgtgc actgttttca agtagcaaat taatagaaac agcctaaatg
 gccatcaaAA AACCTATGCT GTATCCGTGC TATCCAGTAT TATCAAGTTA GAAGTTTAAA
 AGTATCAAGT TAAACCATAT TTCATGACCT AGAAACATAT CTTAAAAATA TATTAAGTGA
 AAAAGTAAAG TTGCAAAGCA ATACAGGTTA
 Y
 GTGATACAAT TTATAGTAAA TACACACTCA CACAGAAAAG CAAAACAATG AATAATTTAT
 AAATATACCT GTATACGTAA GCACATGGAA AATAGTCTGG AAAAAATGTA TGTCATACTA
 ATACAGTGGC TTTAAGGGAG TATCTTTAAG GAAGGGAATA GGATGAGGGG TGGCCAAGTA
 AGAGTTTATC TTTCTTGTAG AATTCTTATT TGAATTCTTT ACAGTAAGAA TTTATTCAGA
 TGTTACTTAC ACAGTTAAAA AGTATTATTT AAATTAAAAG CAAATCAAGA TAATATCAAG
 GGTAGGAAAA GTTTATAAAT ATTGAGAAAA AATATATG

GeneView

Group Label	Contig->mRNA	Gene Model (contig mRNA transcript) Color Legend
reference	NT_022135->NM_207363 function
reference	NT_022135->NM_207481 function

Integrated Maps:

NCBI Resource Links

Population Diversity

	Sample Ascertainment				Genotype Detail				Alleles
ss#	Population	Individual Group	Chrom. Sample Cnt.	Source	C/C	C/T	T/T	HWP	C	T
ss1490998	HapMap-CEU	European	120	IG	0.267	0.500	0.233	1.000	0.517	0.483
	HapMap-HCB	Asian	90	IG	0.800	0.200		0.479	0.900	0.100
	HapMap-JPT	Asian	88	IG	0.909	0.091		0.752	0.955	0.045
	HapMap-YRI	Sub-Saharan African	120	IG	0.850	0.150		0.584	0.925	0.075
	CHMJ	Asian	74	IG					0.905	0.095
ss24637314	AFD_EUR_PANEL	European	48	IG	0.250	0.417	0.333	0.439	0.458	0.542
	AFD_AFR_PANEL	African American	46	IG	0.739	0.217	0.043	0.479	0.848	0.152
	AFD_CHN_PANEL	Asian	46	IG	0.696	0.304		0.403	0.848	0.152
ss66376140	HapMap-CEU	European	118	GF	0.458	0.407	0.136		0.661	0.339
	HapMap-HCB	Asian	90	GF	0.800	0.200			0.900	0.100
	HapMap-JPT	Asian	90	GF	1.000				1.000
	HapMap-YRI	Sub-Saharan African	120	GF	0.900	0.100			0.950	0.050
ss68827999	HapMap-CEU	European	120	GF	0.267	0.500	0.233		0.517	0.483
	HapMap-HCB	Asian	90	GF	0.800	0.200			0.900	0.100
	HapMap-JPT	Asian	90	GF	0.911	0.089			0.956	0.044
	HapMap-YRI	Sub-Saharan African	120	GF	0.850	0.150			0.925	0.075

Validation Summary:

Validation status	Marker displays Mendelian segregation	PCR results confirmed in multiple reactions	Homozygotes detected in individual genotype data
Validated by: PERLEGEN DoubleHit found by:  BCM_SSAHASNP	UNKNOWN	UNKNOWN	UNKNOWN