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BUILD 129
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Reference SNP(refSNP) Cluster Report: rs226358          
refSNP ID: rs226358
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:79/129
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:C/G
Ancestral Allele:Not available
Clinical Association:unknown
HGVS Names
Links

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss1630527 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs226358 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss293313KWOK|OVLP-000621-282772fwd/BC/Gcacctgaacacctgagttgtttgtttgttttttctttctttctttctctttctttctttc06/30/0010/10/0379Genomic97 %
ss295018KWOK|OVLP-000621-292037fwd/BC/Gcacctgaacacctgagttgtttgtttgttttttctttctttctttctctttctttctttc06/30/0010/10/0392Genomic97 %
ss1022457KWOK|OVLP-000804-302138fwd/BC/Gcacctgaacacctgagttgtttgtttgttttttctttctttctttctctttctttctttc09/02/0010/10/0386Genomic97 %
ss1022986KWOK|OVLP-000804-306262fwd/BC/Gcacctgaacacctgagttgtttgtttgttttttctttctttctttctctttctttctttc09/02/0010/10/0392Genomic97 %
ss1630527KWOK|OVLP-000925-85715fwd/BC/Gcacctgaacacctgagttgtttgtttgttttttctttctttctttctctttctttctttc10/04/0010/10/0392Genomic97 %

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs226358|allelePos=1216|totalLen=2177|taxid=9606|snpclass=1|alleles='C/G'|mol=Genomic|build=92
 ATCTGAGATA CCCTAATATT TTCCACGGGC ACAAAATTAC ATTGGTGAAA TCAGCAACAG
 AGTGTCAAAA TGTAGTGTTA AATTGCTAAA GGTAATGAGT TCTTATTCCA GGAGGATTTA
 GTAGAAGTAG TTATTCTAAC TTACTGGCCA TTTGCTACCT TTTAAGTTGG AGGAATGCAC
 GTTCCAGCCT GAGAGACAGC caacagctat ttagaaaaca tcagcaatat ctgggcacca
 cgccaagtgc cgcaactgtc ttgctgcagt tatgaaggca gacatggcct ttcaggcaca
 gagtttacag tctggtaagg aagtcagctg tcaacaggta gtcaaagcat ggagtgctat
 tggatgagta tgagatgctg cggaagcata gaagcaggtc tcacttggtt tacagagaca
 cagggaaggt ttagctgagc aagttacatg taatagacct gaaggataag tgagaatgag
 ccggatgaag acagggcata gcggggatag gtgctaggta ggaggaatag caagtatgaa
 aggctggagg caagaaatta tgacgtataa gtccagcatt gctgaaaaga ggatgcaaga
 gtcattgtgg ggccaggtga ggctgtggag gcaggtgttg gtcaggtaat gaaacatcct
 ttgtgctctt gaaaggaatt ttgcctctat cttaagaaca atgataatcc acgaaatatt
 taatcacaag agagggatga tcagattttc atctcagaat gccacagtgt aaatgaagat
 tgttggaaga gaaggttgtt gaaacacagg ggcaggaaga tgaattgaga agcagtttca
 atagtccagg taatacaaga tttccacctg gtctagggtt gtggtagttg ggataaggag
 tggatgaatt agaaagagaa tgaagtgcag aatctgtagg acttgctaga ttggatattg
 actgtgagag aaatgaatta atgaaatcaa accttaggtt tctgacttga gcctggattc
 cattcaccaa acatgagaga gtggaggagg atggagttag aagaggagca gggtgagatc
 agaatgtcat ttaggatctg tcaagccaaa gatgcctgtg atccatccaa gagatgttaa
 TCATTGAGAC TCAGGATACT AAGTTCTGTA TACTAGAGAA CGCTACACCT GAACACCTGA
 GTTGTTTGTT TGTTT
 S
 TTTCTTTCTt tctttctctt tctttctttc tttctttctt tctttctttc tttctttctt
 tctttctttc tttctctttc tttctttctt tctttcttcc tttcctttcc ttccttcctt
 ccttccttcc ttccttcctt ccttctttct ttctttcttt ctttctttct ttctttcttt
 ctttctttct ttctttcttt ctttctttct tttctttctt tgacagagtc ttactctgtc
 acccaggttg gagtacaatg gcacaaactt ggctcactgc agcctctgcc tcccaggttc
 aagcaattct cctgcctcag cctcctgagt agctgaatta caggcacccg ccaccacacc
 aggctaattt ttgtattttt agtagagaca aggtttcacc atgttggcca ggctggtctc
 aaactcctag cctcaggtga tccacccacc tcagcctccc aaaatgttgg aattacaggt
 gtgagctact gcgcccagcc TACACCTGAG TTTTAAATGG CAATTAAAGC CATTGGAGTA
 GATGTGTTTT TATTGGCCAT TATGCAGAAT TATAAAAAAA AAATGAAGTT TAGAAAAATC
 CCTGAGGAAT ATCAACATGT AAGATACTGA CAGAGGAGGA GCCAACTGCA GTTACTGGTG
 AGGCAGGTAA GAGAGAAACC AACACACTTT ATGTTTCAGA AGTAAATAGA TGAGTATTTT
 AGAAAGGATG GAATATTGTT ACATGTTAAA GATAAATGAA GAGAAAAAAG ATAAAGTTAA
 GTCATTTCTG ATTATAGAGA TTCTAATTAT AGATATTTGT GGTATAGAGA TGATTATTAT
 AATGTCAGTT AAATAATTTT CGCAGAACAC TCAGCAGACC AAGTGTCACA GAAATATCTC
 CATTTTAAAA TTCAGATTTT AAAGGATACT GTTGTTTTTC CATTAAAGAT ACTGGAGACA
 G

  GeneView back to top
GeneView: no link established by analysis of contig annotation
GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  rs226358 maps exactly once on NCBI human chromosome 17
ChromosomeContig
accession		Contig
position		Chromosome
position		Hit
orientation		Contig
Allele		Assembly
Type		Group
label		Contig
label		Neighbor
SNP		SNP_flank
position
17NW_001838403.128863463195176minusCalt_assembly_8HuRefHuRefview1215
17NT_010718.152906022^29060233249398^3249399minus-ref_assemblyreferencereferenceview1212..1215
17NW_926584.132338883316392minusGalt_assembly_1CeleraCeleraview1215

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
AC025125.3 AF095725.1 U78308.1
dbSNP Blast Analysis

  Population Diversity back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation		PCR results confirmed
in multiple reactions		Homozygotes detected
in individual genotype data
UNKNOWNUNKNOWNUNKNOWN

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Revised: May 25, 2006 1:38 PM .