Submitter records for this RefSNP Cluster

NCBI Assay ID	Handle|Submitter ID	Validation Status	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Freq Warning	Ancestral Allele	Success Rate
ss27475	TSC-CSHL|TSC0005239		fwd/T	A/G	agccacacctctgatccaatttctttaccc	taactcaacagaatctattctattctctcc	09/06/00	04/07/04	86	Genomic			95 %
ss3583293	SC_JCM|AC009522.8_19392		fwd/T	A/G	agccacacctctgatccaatttctttaccc	taactcaacagaatctattctattctctcc	09/24/01	10/10/03	100	Genomic			unknown
ss4108309	SC_JCM|AC009522.10_20732		fwd/T	A/G	agccacacctctgatccaatttctttaccc	taactcaacagaatctattctattctctcc	10/15/01	10/10/03	101	Genomic			unknown
ss12218761	WI_SSAHASNP|chr12.NT_019546.15_13735486		rev/B	C/T	ggagagaatagaatagattctgttgagtta	gggtaaagaaattggatcagaggtgtggct	07/04/03	10/10/03	116	Genomic			unknown
ss14530460	WUGSC_SSAHASNP|chr12.NT_019546.15_13735486		rev/B	C/T	ggagagaatagaatagattctgttgagtta	gggtaaagaaattggatcagaggtgtggct	11/05/03	10/25/06	119	Genomic			unknown
ss15994756	SC_SNP|NT_019546.15_13735486		rev/B	C/T	ggagagaatagaatagattctgttgagtta	gggtaaagaaattggatcagaggtgtggct	11/18/03	10/26/06	120	Genomic			unknown
ss16598787	CSHL-HAPMAP|CSHL-HuAA-200402.chr12.NT_019546.15_13735486		rev/B	C/T	ggagagaatagaatagattctgttgagtta	gggtaaagaaattggatcagaggtgtggct	02/17/04	03/04/04	120	Genomic			unknown
ss20938497	SSAHASNP|WGSA-200403-chr12.chr12.NT_019546.15_13735486		rev/B	C/T	ggagagaatagaatagattctgttgagtta	gggtaaagaaattggatcagaggtgtggct	03/19/04	03/19/04	121	Genomic			unknown
ss24707400	PERLEGEN|afd2072558		rev/B	C/T	ggagagaatagaatagattctgttgagtta	gggtaaagaaattggatcagaggtgtggct	08/10/04	09/13/04	123	Genomic			unknown
ss38886939	ABI|hCV2406463		rev/B	C/T	ggagagaatagaatagattctgttgagtta	gggtaaagaaattggatcagaggtgtggct	07/16/05	07/16/05	126	Genomic			unknown
ss65990608	AFFY|SNP_A-1676249		rev/B	C/T	gaatagaatagattctgttgagtta	gggtaaagaaattggatcagaggtg	10/26/06	10/26/06	127	Genomic			unknown
ss82668375	HGSV|Cor18555_SNV_20070510.chr12_88755763		rev/B	C/T	ggagagaatagaatagattctgttgagtta	gggtaaagaaattggatcagaggtgtggct	11/27/07	12/03/07	130	Genomic			unknown
ss89307546	BCMHGSC_JDW|JWB-0592784		rev/B	C/T	ggagagaatagaatagattctgttgagtta	gggtaaagaaattggatcagaggtgtggct	02/26/08	02/28/08	129	Genomic			unknown

Fasta sequence   (Legend)

 AGCCAAAAGT CCCAGAGACA CATACAAACC TCCAGAGAAC TTAGACATTT GAAATCCATG
 ACACTCAGAC AAGGTCTTAT TACATCAGTT GGGTTTTGCT GTGTAAGAAA CTACACCCAA
 AACTGGGTGT CTTAAAATAA TAGTCATTGT TCTGTGAATC AATAATTTGG GCTGGACTTT
 GCTGGGAAGT TCTTCTGCTA GAATTGGCAA GGCTCACCCA TGCAGCTGCA GTCAGTGAGT
 AGATCAGCTA GGGAGTGATT CAACATCTCA CTCAATGTTT GGTGGCTGGT ACTGTCAGTT
 GTTGTTGGCT GCCAGCAGAG TGACAGAGGT GACTGGCCAC AGGTCTCCAG CAAATTGCTC
 CAGGTTTATA TTTACCTGGT TGCAGTCACA AGGCTCCCAA AAGCAGCAAG AGTGGGCAAG
 CCCCAATACA CAATCATATT TCAAGCTTCT GTTTGTATCA CATTTGCTAA TGGCCCATTG
 ATCACAATAA AGCCACATCA CCAAGCCCAG CTCAAAGGGT GAGGAAATAA ACTCCACCTC
 TTGATGGGAG TAGCTGCAAA GAAATATTGC AAAGGGACAG GCAAACAGGT AGAAGATTTT
 ATAACCATGT CTGCAGTCTG CCACATTTTT CTCTCTTCTT CCTTCATTAA CTTCACTTTT
 TCACTACCCA TTCATGCCTC AAGCCACACC TCTGATCCAA TTTCTTTACC C
 R
 TAACTCAACA GAATCTATTC TATTCTCTCC CAAATTACTA ATGACCTCTT TGTTTCTGGC
 TAAGTCCAGG GGACCTTTTT CTCTCATTGT CTCATTTGGA GTCTCAGTGT CACTTGACGC
 AATCTTCTCC ATTGACTTTG ATAGTACTAC TCTTTTCCTT CTTTTCCTCT TAGCTGTTTC
 TTCACAGTCT CCTGCATAGA AAAAGTGGGT AGCAGGGCAC CTAGCACAAA ATATGCATTT
 AAAATTGATT TGTTGAATAA ATGATTAAGT GAATAAATTA ATGAACAAAT AAAATGGGAT
 TATGTTCTAC CCACTGATTA AATGTTGGAG TTTGTAAAGC TTCAGCTACT ACCTATGTGC
 TAACGACTTC CAATTACAAG TCTCCAGCCC AGGTCTCTTT TCTGCACTCA GGCATATGTA
 TGCAGCCTCT GAATAGACTC TTCTCACTGA CACTTCAAAC TCAACCTATC TGAATCTGAT
 CTCATTAACC TCACTTCCAG ATCTGCTTTT CTTTCAAATT CTTTCACGAT CTACACAGTC
 ACCAAAGCCA AACATTTGAG TGTCATTCTA GGCTCCTTCC TATGTGGCAC CAAGTCTTAC
 TGCTTTATCA TTATGTTTTG TTTCATTTTG AGACAGGGTC TCACACTGTC ATCTAGATTG
 GAGTACAGTG GTATGTACTG CAGCCTCCAC CTTGTGGGCT CAAGCAATCC TCCTACCTCA
 GGCTCCTGAG TAGCTGAGAC TACAGGCATG AGCCACCACA ACGAGTTAAT TTTTTAATTT
 TTATTTTGGA AGGACGAGAT CTCACTATTT TGCTCAGGCT GGTCTCAAAC TCCTTCTGCC
 TTGGCCTCCC AACGTGCTAG GCTTTAATTT TTTTTTTTTA ATTTGCTGCC TTCTC

GeneView

Integrated Maps:

NCBI Resource Links

Population Diversity

	Sample Ascertainment				Genotype Detail				Alleles
ss#	Population	Individual Group	Chrom. Sample Cnt.	Source	A/A	A/G	G/G	HWP	A	G
ss15994756	HapMap-CEU	European	120	IG	0.633	0.350	0.017	0.317	0.808	0.192
	HapMap-HCB	Asian	90	IG	0.800	0.200		0.479	0.900	0.100
	HapMap-JPT	Asian	88	IG	0.727	0.273		0.294	0.864	0.136
	HapMap-YRI	Sub-Saharan African	118	IG	0.915	0.085		0.752	0.958	0.042
ss24707400	AFD_EUR_PANEL	European	46	IG	0.609	0.391		0.251	0.804	0.196
	AFD_AFR_PANEL	African American	46	IG	0.783	0.217		0.584	0.891	0.109
	AFD_CHN_PANEL	Asian	48	IG	0.750	0.250		0.527	0.875	0.125
ss27475	AfAm	African American	12	IG	0.667	0.333		0.655	0.833	0.167
	Caucasian	European	24	IG	0.750	0.167	0.083	0.200	0.833	0.167
	Asian	Asian	12	IG	0.500	0.500		0.439	0.750	0.250
	CEPH	European	12	IG	0.667	0.167	0.167	0.200	0.750	0.250
	PDpanel	Global	48	IG	0.667	0.292	0.042	1.000	0.812	0.188

Validation Summary:

Validation status	Marker displays Mendelian segregation	PCR results confirmed in multiple reactions	Homozygotes detected in individual genotype data
Validated by: PERLEGEN DoubleHit found by:  BCM_SSAHASNP, NCBI	UNKNOWN	UNKNOWN	UNKNOWN