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Status
Public on Jan 12, 2008
Title
DKFZ/Operon Human Oligo Set v4.0
Technology type
spotted oligonucleotide
Distribution
non-commercial
Organism(s)
Homo sapiens Manufacturer
DKFZ Heidelberg, Operon
Manufacture protocol
70mer oligonucleotides were diluted at 40 µM in FBNC buffer (G. Wrobel et al., Nucleic Acids Res 31 e67, 2003) and spotted as array duplicates using epoxy-silane coated glass slides (Schott Nexterion) and stainless steel split pins (SMP3, Telechem) at 20°C and 40% rH. Slides were dried (60' @ 60°C) and DNA was UV-crosslinked with 240 mJ/cm2 @ 254 nm. Slides were stored, sealed airtight and dry, at 4°C.
Support
glass
Coating
epoxy-silane
Description
Spotted long oligonucleotide array produced using the Operon Human Genome Oligo Set Version 4.0.
Web link
http://www.dkfz-heidelberg.de/genetics/ Contributor(s)
Sticht C , Freier K , Knoepfle K , Flechtenmacher C , Pungs S , Hofele C , Hahn M , Joos S , Lichter P Submission date
Jan 08, 2008
Contact name
Carsten Sticht
Organization name
University Heidelberg
Department
ZMF
Street address
Theodor-Kutzer-Ufer
City
Mannheim
ZIP/Postal code
68169
Country
Mannheim
Samples (41)
GSM255699 , GSM255700 , GSM255701 , GSM255702 , GSM255703 , GSM255704
GSM255705 ,
GSM255706 ,
GSM255707 ,
GSM255708 ,
GSM255709 ,
GSM255710 ,
GSM255711 ,
GSM255712 ,
GSM255713 ,
GSM255714 ,
GSM255715 ,
GSM255716 ,
GSM255717 ,
GSM255718 ,
GSM255719 ,
GSM255720 ,
GSM255721 ,
GSM255722 ,
GSM255723 ,
GSM255724 ,
GSM255725 ,
GSM255726 ,
GSM255727 ,
GSM255728 ,
GSM255729 ,
GSM255730 ,
GSM255731 ,
GSM255732 ,
GSM255733 ,
GSM255734 ,
GSM255735 ,
GSM255736 ,
GSM255737 ,
GSM255738 ,
GSM255739 Series (1)
GSE10121 Expression Profiling of Oral Squamous Cell Carcinoma and Mucosa of healthy non-tumor patients
Data table header descriptions ID ID.
CloneID Internal DKFZ database ID (PIMS).
OperonID Operon Oligo ID.
Chr Chromosome number.
ChrMidpoint Chromosome Midpoint.
ChrStart Chromosome Startpoint.
ChrEnd Chromosome Endpoint.
Ensembl_ID Ensembl identifier (gene ID).
ORF GeneSymbols gene symbol.
GeneNames gene name.
GB_LIST NCBI GenBank accession number.
SEQUENCE SPOT_ID spot identifier
Data table ID CloneID OperonID Chr ChrMidpoint ChrStart ChrEnd Ensembl_ID ORF GeneSymbols GeneNames GB_LIST SEQUENCE SPOT_ID 1
SB029819
H300006538
1
59402
59367
59437
ENSG00000177693
ENSG00000177693 OR4F5
Olfactory receptor 4F5.
GCTGTCACATGGGGAATTGGCTTTCTCCATTCGGTGAGCCAGTTGGCGTTTGCCGTGCACTTACTCTTCT
2
SB029979
H300006875
1
661383
661348
661418
ENSG00000183127;ENSG00000177799;ENSG00000185097
ENSG00000183127 ; ENSG00000177799 ; ENSG00000185097 OR4F29;OR4F29;OR4F29
Olfactory receptor 4F29 (Olfactory receptor OR1-1).;Olfactory receptor 4F29 (Olfactory receptor OR1-1).;Olfactory receptor 4F29 (Olfactory receptor OR1-1).
GGCATTTCTTGTTAATTTAGCCTTCTGTGGCCCTAATGTGTTGGACAGCTTCTACTGTGACCTTCCTCGG
3
SB028780
H300003718
1
761306
761271
761341
ENSG00000197049
ENSG00000197049 CCCAAAGGCTGGGGTGTTCGGTCTTCAACATTTTTGCCTTTGTGGCTCCCAGTCAAGATAGAGCTGCACC
4
SB029522
H300005753
1
801993
801958
802028
ENSG00000177750
ENSG00000177750 NP_079072.1
BC017762 GAGGGAAGTTTAGATGGGAAGTGGATGGGTCTGAGGAATTTGAACAAACACCGACAGTGAAGGAGAGTGA
5
SB029218
H300004772
1
829036
829001
829071
CTGATGAACATGAGATGACCGCCGTGTGGTAAACTGATGAACCCCGACCCTGATCAACATGAGATGACCG
--UNKNOWN
6
OL024925
H300006070
1
832534
832499
832569
ENSG00000177741
ENSG00000177741 Q96BN7
GCAGCAACAATAATCCACGTAGAGACATGCAAACTAAAAGTCCGTTAGTGGAGGCACGAAGCTGATGAGG
7
SB030343
H300008838
1
843724
843689
843759
TCTTAGAGAACCCAGTGACTTTTTGCACCTTAAATCTGTGAAATCCTCATGTTTTCTTCTGCCGTATCCA
--UNKNOWN
8
OL024643
H300007544
1
901191
901156
901226
GTCGCAGATCGGAGGATGCACCTGCAGGATCCCCTTGGACATAAGCGTCTTCAGACTTTTCCCTGCGAGC
--UNKNOWN
9
OL021120
H200021127
1
919747
919713
919782
ENSG00000187634
ENSG00000187634 SAMD11
sterile alpha motif domain containing 11
BC024295 , AK054643 AGGAGCCACCACTCAACACAATGGCCCTGCCTCCCACCGCTTTATTTCTTTCGGTTTCGGATGCAAAAC
10
OL013105
H200013109
1
920060
920026
920095
ENSG00000188976
ENSG00000188976 NOC2L
Nucleolar complex protein 2 homolog (NOC2 protein homolog).
AL050019 GGCTTTATTATTTATTTTTCAGCATGAAAGACCAAACGTATCGAGAGCTGGGCTGGGCTGGGCTGGTGT
11
OL023828
H300002713
1
939998
939963
940033
ENSG00000187961
ENSG00000187961 KLHL17
Kelch-like protein 17 (Actinfilin).
AY423763 CAACGACGGCACCAGCTGCCTCAACTCGGTAGAGAGATACAGTCCAAAGGCTGGAGCCTGGGAAAGCGTG
12
OL018757
H200018764
1
950096
950062
950131
ENSG00000187583
ENSG00000187583 PLEKHN1
pleckstrin homology domain containing, family N member 1
AL136730 GCTCCAGGGTACCTGCCCCTCTAACCCACTTCAAATTACAAGTCAGGGTCTGAACCCAGTGTGATGGGG
13
OL025091
H300000283
1
955384
955349
955419
ENSG00000187642
ENSG00000187642 Q6ZVZ7
C1orf170 protein.
AK123855 AACCTGACAGGGACATGGCTGTGTCTATACCTGCCTCCAAGCCGCAATCTGACACGGCTGTGTCTACACC
14
SB028448
H300002301
1
974450
974415
974485
ENSG00000188290
ENSG00000188290 HES4
Transcription factor HES-4 (Hairy and enhancer of split 4) (bHLH factor Hes4).
ATCGGAGGCGGCGCCCCGTTCTAGGGCCGTGGCCTTTGCCGAGACTGTAGCAGAGAAAACGTATTTATTA
15
SB030067
H300006942
1
989945
989910
989980
ENSG00000187608
ENSG00000187608 G1P2
Interferon-induced 17 kDa protein precursor [Contains: Ubiquitin cross-reactive protein (hUCRP) (Interferon-induced 15 kDa protein)].
M13755 GGCGGGCGGAGCTAAGGGCCTCCACCAGCATCCGAGCAGGATCAAGGGCCGGAAATAAAGGCTGTTGTAA
16
OL016975
H200016982
1
1030365
1030331
1030400
ENSG00000188157
ENSG00000188157 AGRN
Agrin precursor.
AF016903 AAACTTGTTGCTTTTTGATATGATTTTCTTGCCTGAGTGTTGGCCGGAGGGACTGCTGGCCCGGCCTCC
17
OL012620
H200012624
1
1057974
1057940
1058009
ENSG00000131591
ENSG00000131591 NP_060361.2
AK000591 , AK128271 CCCACCACAGCCATCTCGTTTATCGGACCAGGAGCAGGCATCCATGAGACCTCAGAGCTTCAGATCGAG
18
SB032329
H300013581
1
1059710
1059675
1059745
ENSG00000131591
ENSG00000131591 NP_060361.2
AK000591 , AK128271 CGCGTGTGCCTGTGCCAGGCCATCCCGAGTCCTCACTCTGCCTTTCTCTCCTTTTCAAGGCTGCAATGAT
19
SB032129
H300013073
1
1179498
1179463
1179533
ENSG00000186891
ENSG00000186891 TNFRSF18
Tumor necrosis factor receptor superfamily member 18 precursor (Glucocorticoid-induced TNFR-related protein) (Activation-inducible TNFR family receptor).
AF241229 CCAGTTCGGGTTTCTCACTGTGTTCCCTGGGAACAAGACCCACAACGCTGTGTGCGTCCCAGGGTCCCCG
20
OL015156
H200015162
1
1179754
1179720
1179789
ENSG00000186891
ENSG00000186891 TNFRSF18
Tumor necrosis factor receptor superfamily member 18 precursor (Glucocorticoid-induced TNFR-related protein) (Activation-inducible TNFR family receptor).
AF241229 GGAAATTCAGTTTTGGCTTCCAGTGTATCGACTGTGCCTCGGGGACCTTCTCCGGGGGCCACGAAGGCC
33485 7024 Kbytes .Supplementary data files not provided
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