25 proteins |
U | COG3504 | Type IV secretory pathway, VirB9 components | Help | |
---|---|---|---|---|---|
2 from | query genome Rickettsia prowazekii (Rickettsiales | Alphaproteobacteria) | ||||
RP286 RP290 |
157 letters (r) 0 0 734 = ||| 1 RP290 (157) = 0 0 675 = ||| 2 RC0388 (157) =
-16 109 254 = ||| 7 RP286 (250) = -16 109 253 = ||| 7 RC0384 (250) = -18 134 186 = | 10 XFa0013 (278) = -13 135 170 = || 11 mlr9258 (278) = -17 112 163 = || 11 CC2421 (252) = -14 136 150 = || 11 AGpA229 (284) = -15 137 147 = || 11 SMa1306 (284) = 24 108 98 = || 15 AGpT73 (291) = 61 108 92 = | 12 RSc2576 (334) = 52 110 81 = || 13 CC2686 (327) = -58 134 81 = || 18 BMEII0033 (247) = 49 118 80 = || 15 mlr6404 (332) = 28 459 77 14 MYPU_3230 (631) 27 118 69 = | 16 XF2051 (296) = 27 118 69 = | 16 XFa0042 (296) = -36 126 69 = || 20 mll9604 (258) = 256 339 61 _ 255 slr1710 (749) COG0744 70 95 61 _ 255 BS_ywjD (320) COG4294
BLASTP 2.2.4 [Aug-26-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= RP290 (157 letters) Database: myva 192,987 sequences; 59,019,183 total letters Score E Sequences producing significant alignments: (bits) Value RP290 287 7e-78 RC0388 264 5e-71 RP286 102 3e-22 RC0384 102 4e-22 XFa0013 76 2e-14 mlr9258 70 2e-12 CC2421 67 1e-11 AGpA229 62 3e-10 SMa1306 61 8e-10 AGpT73 42 4e-04 RSc2576 40 0.002 CC2686 36 0.041 BMEII0033 36 0.042 mlr6404 35 0.045 MYPU_3230 34 0.11 XF2051 31 0.95 XFa0042 31 0.95 mll9604 31 0.99 slr1710 28 8.2 BS_ywjD 28 8.5 # >RP290 # Length = 157 # # Score = 287 bits (734), Expect = 7e-78 # Identities = 157/157 (100%), Positives = 157/157 (100%) # # Query: 1 MTIVRFYFLVFLLLSGFTVQRACPVVDDFNSSRNNYVDDLPLTKDNRIKTYIYNPNEVYL 60 # MTIVRFYFLVFLLLSGFTVQRACPVVDDFNSSRNNYVDDLPLTKDNRIKTYIYNPNEVYL # Sbjct: 1 MTIVRFYFLVFLLLSGFTVQRACPVVDDFNSSRNNYVDDLPLTKDNRIKTYIYNPNEVYL 60 # # Query: 61 LVLHFGFQSHIEFAKNEEIQNIILGDAYAWKITTLANRLFIKPLEKDIRTNMTIITNKRT 120 # LVLHFGFQSHIEFAKNEEIQNIILGDAYAWKITTLANRLFIKPLEKDIRTNMTIITNKRT # Sbjct: 61 LVLHFGFQSHIEFAKNEEIQNIILGDAYAWKITTLANRLFIKPLEKDIRTNMTIITNKRT 120 # # Query: 121 YEFDIASTELMIGHERDLVYVIKFYYPKKNSNYMARF 157 # YEFDIASTELMIGHERDLVYVIKFYYPKKNSNYMARF # Sbjct: 121 YEFDIASTELMIGHERDLVYVIKFYYPKKNSNYMARF 157 # # # >RC0388 # Length = 157 # # Score = 264 bits (675), Expect = 5e-71 # Identities = 143/157 (91%), Positives = 150/157 (95%) # # Query: 1 MTIVRFYFLVFLLLSGFTVQRACPVVDDFNSSRNNYVDDLPLTKDNRIKTYIYNPNEVYL 60 # MTIVRFYFLVF+LLSGFTVQR CP+VDD +S NNYVDDL +TKDNRIKTYIYNPNEVYL # Sbjct: 1 MTIVRFYFLVFILLSGFTVQRECPLVDDPCNSSNNYVDDLSITKDNRIKTYIYNPNEVYL 60 # # Query: 61 LVLHFGFQSHIEFAKNEEIQNIILGDAYAWKITTLANRLFIKPLEKDIRTNMTIITNKRT 120 # LVLHFGFQSHIEFAKNEE+QNIILGDAYAWKIT LANRLFIKPLEKDIRTNMTIITNKR # Sbjct: 61 LVLHFGFQSHIEFAKNEEVQNIILGDAYAWKITPLANRLFIKPLEKDIRTNMTIITNKRI 120 # # Query: 121 YEFDIASTELMIGHERDLVYVIKFYYPKKNSNYMARF 157 # YEFDIASTELM+G+ERDLVYVIKFYYPKKNSNYMARF # Sbjct: 121 YEFDIASTELMMGNERDLVYVIKFYYPKKNSNYMARF 157 # # # >RP286 # Length = 250 # # Score = 102 bits (254), Expect = 3e-22 # Identities = 48/115 (41%), Positives = 79/115 (67%) # # Query: 41 PLTKDNRIKTYIYNPNEVYLLVLHFGFQSHIEFAKNEEIQNIILGDAYAWKITTLANRLF 100 # PL +D R++ IYNP++V+ ++G+Q+ IE A+ EEI +I +GD +W+I +R+F # Sbjct: 25 PLGRDPRLRVMIYNPDDVFKFTGYYGYQASIELAQEEEIVSISMGDTTSWQIVPAGHRIF 84 # # Query: 101 IKPLEKDIRTNMTIITNKRTYEFDIASTELMIGHERDLVYVIKFYYPKKNSNYMA 155 # IKP+E D TNMT+ITNKRTY F++ + E + + ++V+ +KF YP ++ M+ # Sbjct: 85 IKPMEPDATTNMTLITNKRTYFFELYAAETLDIRDPEMVFNVKFLYPDDENDNMS 139 # # # >RC0384 # Length = 250 # # Score = 102 bits (253), Expect = 4e-22 # Identities = 47/115 (40%), Positives = 79/115 (67%) # # Query: 41 PLTKDNRIKTYIYNPNEVYLLVLHFGFQSHIEFAKNEEIQNIILGDAYAWKITTLANRLF 100 # PL +D R++ YNP++V+ ++G+Q+ IE A++EEI +I +GD +W+I +R+F # Sbjct: 25 PLGRDPRLRVMTYNPDDVFKFTGYYGYQASIELARDEEIVSISMGDTTSWQIVPAGHRIF 84 # # Query: 101 IKPLEKDIRTNMTIITNKRTYEFDIASTELMIGHERDLVYVIKFYYPKKNSNYMA 155 # IKP+E D TNMT+ITNKRTY F++ + E + + ++V+ +KF YP ++ M+ # Sbjct: 85 IKPMEPDATTNMTLITNKRTYFFELYAAETLDMRDPEMVFNVKFLYPDDENDNMS 139 # # # >XFa0013 # Length = 278 # # Score = 76.3 bits (186), Expect = 2e-14 # Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 5/108 (4%) # # Query: 45 DNRIKTYIYNPNEVYLLVLHFGFQSHIEFAKNEEIQNIILGDAYAWKITTLANRLFIKPL 104 # D I+ YNP + L +G +H++FA E IQ + LGD AWK+ N LFIKP # Sbjct: 27 DPHIRIVDYNPMNLVKLSTFYGVSTHVQFADGETIQAVALGDDQAWKVVNRENHLFIKPQ 86 # # Query: 105 EKDIRTNMTIITNKRTYEFDIA-----STELMIGHERDLVYVIKFYYP 147 # K TN+T++TN RTYEF + + + +L++ + F YP # Sbjct: 87 AKKADTNLTVVTNLRTYEFALVVHPRRPNDSTAWADPNLIFSLTFRYP 134 # # # >mlr9258 # Length = 278 # # Score = 70.1 bits (170), Expect = 2e-12 # Identities = 38/112 (33%), Positives = 64/112 (56%), Gaps = 5/112 (4%) # # Query: 43 TKDNRIKTYIYNPNEVYLLVLHFGFQSHIEFAKNEEIQNIILGDAYAWKI--TTLANRLF 100 # ++D+RI+ Y ++V + +G + IEF +E+I+ + GD AW I N LF # Sbjct: 30 SRDSRIRFVWYQKDDVVSVPASYGASTMIEFGDDEKIETLGAGDVPAWSIEPNKKGNVLF 89 # # Query: 101 IKPLEKDIRTNMTIITNKRTYEFDIASTELMIGHERDLVYVIKFYYPKKNSN 152 # +KP+EK+ N+ ++TNKR+Y F + + + VY IKF YP++ S+ # Sbjct: 90 VKPIEKNAGGNLNVLTNKRSYVFFLKGEFRPVAQQ---VYAIKFRYPEEASD 138 # # # >CC2421 # Length = 252 # # Score = 67.4 bits (163), Expect = 1e-11 # Identities = 36/105 (34%), Positives = 60/105 (56%), Gaps = 4/105 (3%) # # Query: 45 DNRIKTYIYNPNEVYLLVLHFGFQSHIEFAKNEEIQNIILGDAYAWKITT--LANRLFIK 102 # D R++ Y P++V L GF + F ++E I+N+ +GD+ W+IT A LF+K # Sbjct: 28 DQRVRIVRYVPDQVVRLDATLGFVVTLFFGEDERIENVAVGDSLGWQITPNRRARVLFVK 87 # # Query: 103 PLEKDIRTNMTIITNKRTYEFDIASTELMIGHERDLVYVIKFYYP 147 # P E+ TNMT++T R+Y FD+ + + R ++ ++F YP # Sbjct: 88 PNERATATNMTVVTTLRSYNFDLRA--VASSRARQPLFSLRFDYP 130 # # # >AGpA229 # Length = 284 # # Score = 62.4 bits (150), Expect = 3e-10 # Identities = 30/110 (27%), Positives = 62/110 (56%), Gaps = 5/110 (4%) # # Query: 43 TKDNRIKTYIYNPNEVYLLVLHFGFQSHIEFAKNEEIQNIILGDAYAWKITTLANRLFIK 102 # ++D+RI+ Y P + +V +EFA +EEI ++ LG++ AW++ N LF+K # Sbjct: 29 SQDSRIRFVNYQPYNITRVVGTLRSSVQVEFAADEEIAHVALGNSVAWEVAPAGNILFLK 88 # # Query: 103 PLEKDIRTNMTIITNK-----RTYEFDIASTELMIGHERDLVYVIKFYYP 147 # P E TN++++T + R+Y+ ++ + + + ++ + +K+ YP # Sbjct: 89 PRESQPVTNISVVTTRRDGSTRSYQMELTARDGSVEAGQNTYFYVKYRYP 138 # # # >SMa1306 # Length = 284 # # Score = 61.2 bits (147), Expect = 8e-10 # Identities = 29/110 (26%), Positives = 61/110 (55%), Gaps = 5/110 (4%) # # Query: 43 TKDNRIKTYIYNPNEVYLLVLHFGFQSHIEFAKNEEIQNIILGDAYAWKITTLANRLFIK 102 # T+D+R++ Y P + ++ +EFA +EEI ++ LG++ AW++ N LF+K # Sbjct: 28 TQDSRVRFVDYQPYNITRIIGSLRSSVQVEFAPDEEIAHVALGNSVAWEVAPAGNILFLK 87 # # Query: 103 PLEKDIRTNMTIITNK-----RTYEFDIASTELMIGHERDLVYVIKFYYP 147 # P E TN++++T + R+Y+ ++ + + ++ + +K+ YP # Sbjct: 88 PRENQPVTNISVVTTRRDGSTRSYQMELTVRDGKVEVGQNTYFYVKYRYP 137 # # # >AGpT73 # Length = 291 # # Score = 42.4 bits (98), Expect = 4e-04 # Identities = 25/93 (26%), Positives = 44/93 (46%), Gaps = 14/93 (15%) # # Query: 71 IEFAKNEEIQNIILGDAYAWKITTL--------ANRLFIKPLEKDIRTNMTIITNKRTYE 122 # IE E ++++++GD WK+ A L +KP E ++ T+M + T++RTY # Sbjct: 95 IELQGGEVVRDVLVGDTVRWKVEPATSGAAGGQAIHLIVKPSEPNLVTSMVVTTSRRTYH 154 # # Query: 123 FDIASTELMIGHERDLVYVIKFYYPKKNSNYMA 155 # + S H + + F YP+ S +A # Sbjct: 155 IQLKS------HANQYMARVGFEYPEDVSARLA 181 # # # >RSc2576 # Length = 334 # # Score = 40.0 bits (92), Expect = 0.002 # Identities = 22/92 (23%), Positives = 42/92 (44%), Gaps = 8/92 (8%) # # Query: 46 NRIKTYIYNPNEVYLLVLHFGFQSHIEFAKNEEIQNIILGDAYAWKI--------TTLAN 97 # N I+ + + +Y + G + + EE+ + GD W + L # Sbjct: 107 NAIQVWPFTDGALYQVYAAPGRVTVVSLQPGEELVTVAAGDTVRWIVGDTSSGSGDALRV 166 # # Query: 98 RLFIKPLEKDIRTNMTIITNKRTYEFDIASTE 129 # + +KP+ ++TN+ I T++RTY ++ STE # Sbjct: 167 NVLVKPIRSGLKTNLVITTSRRTYLLELTSTE 198 # # # >CC2686 # Length = 327 # # Score = 35.8 bits (81), Expect = 0.041 # Identities = 22/92 (23%), Positives = 37/92 (39%), Gaps = 8/92 (8%) # # Query: 46 NRIKTYIYNPNEVYLLVLHFGFQSHIEFAKNEEIQNIILGDAYAWKITTLAN-------- 97 # N I+ Y + +Y L S + E++ + GD W + + # Sbjct: 98 NAIQVYPWTEGALYRLYTAPERVSDVALEPGEQLTAVSAGDTVRWVVGDTTSGEGQAKRA 157 # # Query: 98 RLFIKPLEKDIRTNMTIITNKRTYEFDIASTE 129 # + IKP + TNM I T++R Y + ST+ # Sbjct: 158 HVLIKPFAAGLSTNMVITTDRRAYHLALESTD 189 # # # >BMEII0033 # Length = 247 # # Score = 35.8 bits (81), Expect = 0.042 # Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 20/99 (20%) # # Query: 66 GFQSHIEFAKNEEIQNIILGDAYAWKITTLANRLFIK----------------PLEKDIR 109 # G + I FA E I+++ G W+ N L++K P # Sbjct: 8 GVGARIVFAPGENIEDVASGFTQGWEFKASHNILYLKARSMTLSHSNQSIDMAPEPGKWD 67 # # Query: 110 TNMTIITNKRTYEFDIASTELMIGHERDLV-YVIKFYYP 147 # TN+ + T++R Y+FD+ LM G V Y ++F YP # Sbjct: 68 TNLMVTTDQRMYDFDL---RLMPGRNNQRVAYRVQFRYP 103 # # # >mlr6404 # Length = 332 # # Score = 35.4 bits (80), Expect = 0.045 # Identities = 22/92 (23%), Positives = 37/92 (39%), Gaps = 8/92 (8%) # # Query: 46 NRIKTYIYNPNEVYLLVLHFGFQSHIEFAKNEEIQNIILGDAYAWKITTLAN-------- 97 # N ++ Y + +Y L + I E++ + GD W I + # Sbjct: 95 NAVQVYPFADGALYQLYAAPERVTDIALQPGEKLTAVSAGDTVRWVIGDTVSGTGDNQRT 154 # # Query: 98 RLFIKPLEKDIRTNMTIITNKRTYEFDIASTE 129 # + +KP + TN+ I T +RTY + STE # Sbjct: 155 HVLVKPFAPGLNTNLVITTERRTYHLQLQSTE 186 # # # >MYPU_3230 # Length = 631 # # Score = 34.3 bits (77), Expect = 0.11 # Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 13/121 (10%) # # Query: 24 PVVDDFNSSRNNYVDDLPLTKDNRIKTYIYNPNEVYLLVLHFGFQSHIEFAKNEEIQNII 83 # P+VD +N ++ D LP+ + ++ YN L G QS ++ KN EI N++ # Sbjct: 52 PLVDIYNETQKGTKDFLPIELQS-LEVSKYNSQR----ELSNGVQSRLKSEKNSEIPNLL 106 # # Query: 84 LGDAYAWKITTLANRLFIKPLEKDIRTNMTIITNKRTYEFDIASTELMIGHERDLVYVIK 143 # L D Y+ + NRL + + T IT + E + + GH + ++ I # Sbjct: 107 LSDTYSAFVVNQFNRL--------LDFSNTQITKDKFEEKFYQNNNKIPGHPDEKIFAIP 158 # # Query: 144 F 144 # F # Sbjct: 159 F 159 # # # >XF2051 # Length = 296 # # Score = 31.2 bits (69), Expect = 0.95 # Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 6/50 (12%) # # Query: 99 LFIKPLEKDIRTNMTIITNKRTYEFDIASTELMIGHERDLVYVIKFYYPK 148 # L +KPL+ + T + + T++RTY F + S+ L+ + F YP+ # Sbjct: 126 LILKPLDVGLDTTLVLTTDRRTYHFRLRSS------RTQLMPFVSFTYPE 169 # # # >XFa0042 # Length = 296 # # Score = 31.2 bits (69), Expect = 0.95 # Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 6/50 (12%) # # Query: 99 LFIKPLEKDIRTNMTIITNKRTYEFDIASTELMIGHERDLVYVIKFYYPK 148 # L +KPL+ + T + + T++RTY F + S+ L+ + F YP+ # Sbjct: 126 LILKPLDVGLDTTLVLTTDRRTYHFRLRSS------RTQLMPFVSFTYPE 169 # # # >mll9604 # Length = 258 # # Score = 31.2 bits (69), Expect = 0.99 # Identities = 24/91 (26%), Positives = 41/91 (44%), Gaps = 11/91 (12%) # # Query: 46 NRIKTYIYNPNEVYLLVLHFGFQSHIEFAKNEEIQN---IILGDAYAWKI------TTLA 96 # N I+ Y ++ +Y + G + I E + I GD W I + +A # Sbjct: 10 NAIQIYPWSEGALYQVYAAPGQITDIALEPGETLTGDGPIAAGDTARWIIGDTESGSGIA 69 # # Query: 97 NR--LFIKPLEKDIRTNMTIITNKRTYEFDI 125 # R + +KP DI TN+ I T++R+Y ++ # Sbjct: 70 RRVHVLVKPSRADITTNLIIATDRRSYMLEL 100 # # # >slr1710 # Length = 749 # # Score = 28.1 bits (61), Expect = 8.2 # Identities = 14/45 (31%), Positives = 28/45 (62%), Gaps = 3/45 (6%) # # Query: 43 TKDNRIKTYIYNPNEVYLLVLHFGFQSHIEFAKNEEIQNIILGDA 87 # +KD+ +K Y+ N VYL ++GF+ +F ++ Q++ +G+A # Sbjct: 299 SKDDILKAYL---NRVYLGAGNYGFEDAAQFYFDKSAQDLDVGEA 340 # # # >BS_ywjD # Length = 320 # # Score = 28.1 bits (61), Expect = 8.5 # Identities = 20/72 (27%), Positives = 35/72 (47%), Gaps = 4/72 (5%) # # Query: 76 NEEIQNIILGDAYAWKITTLAN-RLFIKPLEKDIRTNMTIITNKRTYEFDIASTELMIGH 134 # + + NI +G AY K T A IK L ++I+ MT+ + +TY L + # Sbjct: 146 DRSVINIHIGGAYGNKDTATAQFHQNIKQLPQEIKERMTLENDDKTY---TTEETLQVCE 202 # # Query: 135 ERDLVYVIKFYY 146 # + D+ +V F++ # Sbjct: 203 QEDVPFVFDFHH 214 # # Database: myva Posted date: Sep 16, 2002 2:25 PM Number of letters in database: 59,019,183 Number of sequences in database: 192,987 Lambda K H 0.326 0.142 0.420 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 17,671,526 Number of Sequences: 192987 Number of extensions: 696380 Number of successful extensions: 2091 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 16 Number of HSP's that attempted gapping in prelim test: 2068 Number of HSP's gapped (non-prelim): 34 length of query: 157 length of database: 59,019,183 effective HSP length: 100 effective length of query: 57 effective length of database: 39,720,483 effective search space: 2264067531 effective search space used: 2264067531 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 61 (28.1 bits) S2: 61 (28.1 bits)