proteins
| 25 proteins |
U | COG3504 | Type IV secretory pathway, VirB9 components | Help | |
|---|---|---|---|---|---|
| 2 from | query genome Rickettsia prowazekii (Rickettsiales | Alphaproteobacteria) | ||||
| RP286 RP290 | ||||
157 letters (r) 0
0 734 = ||| 1 RP290 (157) = 0
-16
BLASTP 2.2.4 [Aug-26-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= RP290
(157 letters)
Database: myva
192,987 sequences; 59,019,183 total letters
Score E
Sequences producing significant alignments: (bits) Value
RP290 287 7e-78
RC0388 264 5e-71
RP286 102 3e-22
RC0384 102 4e-22
XFa0013 76 2e-14
mlr9258 70 2e-12
CC2421 67 1e-11
AGpA229 62 3e-10
SMa1306 61 8e-10
AGpT73 42 4e-04
RSc2576 40 0.002
CC2686 36 0.041
BMEII0033 36 0.042
mlr6404 35 0.045
MYPU_3230 34 0.11
XF2051 31 0.95
XFa0042 31 0.95
mll9604 31 0.99
slr1710 28 8.2
BS_ywjD 28 8.5
# >RP290
# Length = 157
#
# Score = 287 bits (734), Expect = 7e-78
# Identities = 157/157 (100%), Positives = 157/157 (100%)
#
# Query: 1 MTIVRFYFLVFLLLSGFTVQRACPVVDDFNSSRNNYVDDLPLTKDNRIKTYIYNPNEVYL 60
# MTIVRFYFLVFLLLSGFTVQRACPVVDDFNSSRNNYVDDLPLTKDNRIKTYIYNPNEVYL
# Sbjct: 1 MTIVRFYFLVFLLLSGFTVQRACPVVDDFNSSRNNYVDDLPLTKDNRIKTYIYNPNEVYL 60
#
# Query: 61 LVLHFGFQSHIEFAKNEEIQNIILGDAYAWKITTLANRLFIKPLEKDIRTNMTIITNKRT 120
# LVLHFGFQSHIEFAKNEEIQNIILGDAYAWKITTLANRLFIKPLEKDIRTNMTIITNKRT
# Sbjct: 61 LVLHFGFQSHIEFAKNEEIQNIILGDAYAWKITTLANRLFIKPLEKDIRTNMTIITNKRT 120
#
# Query: 121 YEFDIASTELMIGHERDLVYVIKFYYPKKNSNYMARF 157
# YEFDIASTELMIGHERDLVYVIKFYYPKKNSNYMARF
# Sbjct: 121 YEFDIASTELMIGHERDLVYVIKFYYPKKNSNYMARF 157
#
#
# >RC0388
# Length = 157
#
# Score = 264 bits (675), Expect = 5e-71
# Identities = 143/157 (91%), Positives = 150/157 (95%)
#
# Query: 1 MTIVRFYFLVFLLLSGFTVQRACPVVDDFNSSRNNYVDDLPLTKDNRIKTYIYNPNEVYL 60
# MTIVRFYFLVF+LLSGFTVQR CP+VDD +S NNYVDDL +TKDNRIKTYIYNPNEVYL
# Sbjct: 1 MTIVRFYFLVFILLSGFTVQRECPLVDDPCNSSNNYVDDLSITKDNRIKTYIYNPNEVYL 60
#
# Query: 61 LVLHFGFQSHIEFAKNEEIQNIILGDAYAWKITTLANRLFIKPLEKDIRTNMTIITNKRT 120
# LVLHFGFQSHIEFAKNEE+QNIILGDAYAWKIT LANRLFIKPLEKDIRTNMTIITNKR
# Sbjct: 61 LVLHFGFQSHIEFAKNEEVQNIILGDAYAWKITPLANRLFIKPLEKDIRTNMTIITNKRI 120
#
# Query: 121 YEFDIASTELMIGHERDLVYVIKFYYPKKNSNYMARF 157
# YEFDIASTELM+G+ERDLVYVIKFYYPKKNSNYMARF
# Sbjct: 121 YEFDIASTELMMGNERDLVYVIKFYYPKKNSNYMARF 157
#
#
# >RP286
# Length = 250
#
# Score = 102 bits (254), Expect = 3e-22
# Identities = 48/115 (41%), Positives = 79/115 (67%)
#
# Query: 41 PLTKDNRIKTYIYNPNEVYLLVLHFGFQSHIEFAKNEEIQNIILGDAYAWKITTLANRLF 100
# PL +D R++ IYNP++V+ ++G+Q+ IE A+ EEI +I +GD +W+I +R+F
# Sbjct: 25 PLGRDPRLRVMIYNPDDVFKFTGYYGYQASIELAQEEEIVSISMGDTTSWQIVPAGHRIF 84
#
# Query: 101 IKPLEKDIRTNMTIITNKRTYEFDIASTELMIGHERDLVYVIKFYYPKKNSNYMA 155
# IKP+E D TNMT+ITNKRTY F++ + E + + ++V+ +KF YP ++ M+
# Sbjct: 85 IKPMEPDATTNMTLITNKRTYFFELYAAETLDIRDPEMVFNVKFLYPDDENDNMS 139
#
#
# >RC0384
# Length = 250
#
# Score = 102 bits (253), Expect = 4e-22
# Identities = 47/115 (40%), Positives = 79/115 (67%)
#
# Query: 41 PLTKDNRIKTYIYNPNEVYLLVLHFGFQSHIEFAKNEEIQNIILGDAYAWKITTLANRLF 100
# PL +D R++ YNP++V+ ++G+Q+ IE A++EEI +I +GD +W+I +R+F
# Sbjct: 25 PLGRDPRLRVMTYNPDDVFKFTGYYGYQASIELARDEEIVSISMGDTTSWQIVPAGHRIF 84
#
# Query: 101 IKPLEKDIRTNMTIITNKRTYEFDIASTELMIGHERDLVYVIKFYYPKKNSNYMA 155
# IKP+E D TNMT+ITNKRTY F++ + E + + ++V+ +KF YP ++ M+
# Sbjct: 85 IKPMEPDATTNMTLITNKRTYFFELYAAETLDMRDPEMVFNVKFLYPDDENDNMS 139
#
#
# >XFa0013
# Length = 278
#
# Score = 76.3 bits (186), Expect = 2e-14
# Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 5/108 (4%)
#
# Query: 45 DNRIKTYIYNPNEVYLLVLHFGFQSHIEFAKNEEIQNIILGDAYAWKITTLANRLFIKPL 104
# D I+ YNP + L +G +H++FA E IQ + LGD AWK+ N LFIKP
# Sbjct: 27 DPHIRIVDYNPMNLVKLSTFYGVSTHVQFADGETIQAVALGDDQAWKVVNRENHLFIKPQ 86
#
# Query: 105 EKDIRTNMTIITNKRTYEFDIA-----STELMIGHERDLVYVIKFYYP 147
# K TN+T++TN RTYEF + + + +L++ + F YP
# Sbjct: 87 AKKADTNLTVVTNLRTYEFALVVHPRRPNDSTAWADPNLIFSLTFRYP 134
#
#
# >mlr9258
# Length = 278
#
# Score = 70.1 bits (170), Expect = 2e-12
# Identities = 38/112 (33%), Positives = 64/112 (56%), Gaps = 5/112 (4%)
#
# Query: 43 TKDNRIKTYIYNPNEVYLLVLHFGFQSHIEFAKNEEIQNIILGDAYAWKI--TTLANRLF 100
# ++D+RI+ Y ++V + +G + IEF +E+I+ + GD AW I N LF
# Sbjct: 30 SRDSRIRFVWYQKDDVVSVPASYGASTMIEFGDDEKIETLGAGDVPAWSIEPNKKGNVLF 89
#
# Query: 101 IKPLEKDIRTNMTIITNKRTYEFDIASTELMIGHERDLVYVIKFYYPKKNSN 152
# +KP+EK+ N+ ++TNKR+Y F + + + VY IKF YP++ S+
# Sbjct: 90 VKPIEKNAGGNLNVLTNKRSYVFFLKGEFRPVAQQ---VYAIKFRYPEEASD 138
#
#
# >CC2421
# Length = 252
#
# Score = 67.4 bits (163), Expect = 1e-11
# Identities = 36/105 (34%), Positives = 60/105 (56%), Gaps = 4/105 (3%)
#
# Query: 45 DNRIKTYIYNPNEVYLLVLHFGFQSHIEFAKNEEIQNIILGDAYAWKITT--LANRLFIK 102
# D R++ Y P++V L GF + F ++E I+N+ +GD+ W+IT A LF+K
# Sbjct: 28 DQRVRIVRYVPDQVVRLDATLGFVVTLFFGEDERIENVAVGDSLGWQITPNRRARVLFVK 87
#
# Query: 103 PLEKDIRTNMTIITNKRTYEFDIASTELMIGHERDLVYVIKFYYP 147
# P E+ TNMT++T R+Y FD+ + + R ++ ++F YP
# Sbjct: 88 PNERATATNMTVVTTLRSYNFDLRA--VASSRARQPLFSLRFDYP 130
#
#
# >AGpA229
# Length = 284
#
# Score = 62.4 bits (150), Expect = 3e-10
# Identities = 30/110 (27%), Positives = 62/110 (56%), Gaps = 5/110 (4%)
#
# Query: 43 TKDNRIKTYIYNPNEVYLLVLHFGFQSHIEFAKNEEIQNIILGDAYAWKITTLANRLFIK 102
# ++D+RI+ Y P + +V +EFA +EEI ++ LG++ AW++ N LF+K
# Sbjct: 29 SQDSRIRFVNYQPYNITRVVGTLRSSVQVEFAADEEIAHVALGNSVAWEVAPAGNILFLK 88
#
# Query: 103 PLEKDIRTNMTIITNK-----RTYEFDIASTELMIGHERDLVYVIKFYYP 147
# P E TN++++T + R+Y+ ++ + + + ++ + +K+ YP
# Sbjct: 89 PRESQPVTNISVVTTRRDGSTRSYQMELTARDGSVEAGQNTYFYVKYRYP 138
#
#
# >SMa1306
# Length = 284
#
# Score = 61.2 bits (147), Expect = 8e-10
# Identities = 29/110 (26%), Positives = 61/110 (55%), Gaps = 5/110 (4%)
#
# Query: 43 TKDNRIKTYIYNPNEVYLLVLHFGFQSHIEFAKNEEIQNIILGDAYAWKITTLANRLFIK 102
# T+D+R++ Y P + ++ +EFA +EEI ++ LG++ AW++ N LF+K
# Sbjct: 28 TQDSRVRFVDYQPYNITRIIGSLRSSVQVEFAPDEEIAHVALGNSVAWEVAPAGNILFLK 87
#
# Query: 103 PLEKDIRTNMTIITNK-----RTYEFDIASTELMIGHERDLVYVIKFYYP 147
# P E TN++++T + R+Y+ ++ + + ++ + +K+ YP
# Sbjct: 88 PRENQPVTNISVVTTRRDGSTRSYQMELTVRDGKVEVGQNTYFYVKYRYP 137
#
#
# >AGpT73
# Length = 291
#
# Score = 42.4 bits (98), Expect = 4e-04
# Identities = 25/93 (26%), Positives = 44/93 (46%), Gaps = 14/93 (15%)
#
# Query: 71 IEFAKNEEIQNIILGDAYAWKITTL--------ANRLFIKPLEKDIRTNMTIITNKRTYE 122
# IE E ++++++GD WK+ A L +KP E ++ T+M + T++RTY
# Sbjct: 95 IELQGGEVVRDVLVGDTVRWKVEPATSGAAGGQAIHLIVKPSEPNLVTSMVVTTSRRTYH 154
#
# Query: 123 FDIASTELMIGHERDLVYVIKFYYPKKNSNYMA 155
# + S H + + F YP+ S +A
# Sbjct: 155 IQLKS------HANQYMARVGFEYPEDVSARLA 181
#
#
# >RSc2576
# Length = 334
#
# Score = 40.0 bits (92), Expect = 0.002
# Identities = 22/92 (23%), Positives = 42/92 (44%), Gaps = 8/92 (8%)
#
# Query: 46 NRIKTYIYNPNEVYLLVLHFGFQSHIEFAKNEEIQNIILGDAYAWKI--------TTLAN 97
# N I+ + + +Y + G + + EE+ + GD W + L
# Sbjct: 107 NAIQVWPFTDGALYQVYAAPGRVTVVSLQPGEELVTVAAGDTVRWIVGDTSSGSGDALRV 166
#
# Query: 98 RLFIKPLEKDIRTNMTIITNKRTYEFDIASTE 129
# + +KP+ ++TN+ I T++RTY ++ STE
# Sbjct: 167 NVLVKPIRSGLKTNLVITTSRRTYLLELTSTE 198
#
#
# >CC2686
# Length = 327
#
# Score = 35.8 bits (81), Expect = 0.041
# Identities = 22/92 (23%), Positives = 37/92 (39%), Gaps = 8/92 (8%)
#
# Query: 46 NRIKTYIYNPNEVYLLVLHFGFQSHIEFAKNEEIQNIILGDAYAWKITTLAN-------- 97
# N I+ Y + +Y L S + E++ + GD W + +
# Sbjct: 98 NAIQVYPWTEGALYRLYTAPERVSDVALEPGEQLTAVSAGDTVRWVVGDTTSGEGQAKRA 157
#
# Query: 98 RLFIKPLEKDIRTNMTIITNKRTYEFDIASTE 129
# + IKP + TNM I T++R Y + ST+
# Sbjct: 158 HVLIKPFAAGLSTNMVITTDRRAYHLALESTD 189
#
#
# >BMEII0033
# Length = 247
#
# Score = 35.8 bits (81), Expect = 0.042
# Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 20/99 (20%)
#
# Query: 66 GFQSHIEFAKNEEIQNIILGDAYAWKITTLANRLFIK----------------PLEKDIR 109
# G + I FA E I+++ G W+ N L++K P
# Sbjct: 8 GVGARIVFAPGENIEDVASGFTQGWEFKASHNILYLKARSMTLSHSNQSIDMAPEPGKWD 67
#
# Query: 110 TNMTIITNKRTYEFDIASTELMIGHERDLV-YVIKFYYP 147
# TN+ + T++R Y+FD+ LM G V Y ++F YP
# Sbjct: 68 TNLMVTTDQRMYDFDL---RLMPGRNNQRVAYRVQFRYP 103
#
#
# >mlr6404
# Length = 332
#
# Score = 35.4 bits (80), Expect = 0.045
# Identities = 22/92 (23%), Positives = 37/92 (39%), Gaps = 8/92 (8%)
#
# Query: 46 NRIKTYIYNPNEVYLLVLHFGFQSHIEFAKNEEIQNIILGDAYAWKITTLAN-------- 97
# N ++ Y + +Y L + I E++ + GD W I +
# Sbjct: 95 NAVQVYPFADGALYQLYAAPERVTDIALQPGEKLTAVSAGDTVRWVIGDTVSGTGDNQRT 154
#
# Query: 98 RLFIKPLEKDIRTNMTIITNKRTYEFDIASTE 129
# + +KP + TN+ I T +RTY + STE
# Sbjct: 155 HVLVKPFAPGLNTNLVITTERRTYHLQLQSTE 186
#
#
# >MYPU_3230
# Length = 631
#
# Score = 34.3 bits (77), Expect = 0.11
# Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 13/121 (10%)
#
# Query: 24 PVVDDFNSSRNNYVDDLPLTKDNRIKTYIYNPNEVYLLVLHFGFQSHIEFAKNEEIQNII 83
# P+VD +N ++ D LP+ + ++ YN L G QS ++ KN EI N++
# Sbjct: 52 PLVDIYNETQKGTKDFLPIELQS-LEVSKYNSQR----ELSNGVQSRLKSEKNSEIPNLL 106
#
# Query: 84 LGDAYAWKITTLANRLFIKPLEKDIRTNMTIITNKRTYEFDIASTELMIGHERDLVYVIK 143
# L D Y+ + NRL + + T IT + E + + GH + ++ I
# Sbjct: 107 LSDTYSAFVVNQFNRL--------LDFSNTQITKDKFEEKFYQNNNKIPGHPDEKIFAIP 158
#
# Query: 144 F 144
# F
# Sbjct: 159 F 159
#
#
# >XF2051
# Length = 296
#
# Score = 31.2 bits (69), Expect = 0.95
# Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
#
# Query: 99 LFIKPLEKDIRTNMTIITNKRTYEFDIASTELMIGHERDLVYVIKFYYPK 148
# L +KPL+ + T + + T++RTY F + S+ L+ + F YP+
# Sbjct: 126 LILKPLDVGLDTTLVLTTDRRTYHFRLRSS------RTQLMPFVSFTYPE 169
#
#
# >XFa0042
# Length = 296
#
# Score = 31.2 bits (69), Expect = 0.95
# Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
#
# Query: 99 LFIKPLEKDIRTNMTIITNKRTYEFDIASTELMIGHERDLVYVIKFYYPK 148
# L +KPL+ + T + + T++RTY F + S+ L+ + F YP+
# Sbjct: 126 LILKPLDVGLDTTLVLTTDRRTYHFRLRSS------RTQLMPFVSFTYPE 169
#
#
# >mll9604
# Length = 258
#
# Score = 31.2 bits (69), Expect = 0.99
# Identities = 24/91 (26%), Positives = 41/91 (44%), Gaps = 11/91 (12%)
#
# Query: 46 NRIKTYIYNPNEVYLLVLHFGFQSHIEFAKNEEIQN---IILGDAYAWKI------TTLA 96
# N I+ Y ++ +Y + G + I E + I GD W I + +A
# Sbjct: 10 NAIQIYPWSEGALYQVYAAPGQITDIALEPGETLTGDGPIAAGDTARWIIGDTESGSGIA 69
#
# Query: 97 NR--LFIKPLEKDIRTNMTIITNKRTYEFDI 125
# R + +KP DI TN+ I T++R+Y ++
# Sbjct: 70 RRVHVLVKPSRADITTNLIIATDRRSYMLEL 100
#
#
# >slr1710
# Length = 749
#
# Score = 28.1 bits (61), Expect = 8.2
# Identities = 14/45 (31%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
#
# Query: 43 TKDNRIKTYIYNPNEVYLLVLHFGFQSHIEFAKNEEIQNIILGDA 87
# +KD+ +K Y+ N VYL ++GF+ +F ++ Q++ +G+A
# Sbjct: 299 SKDDILKAYL---NRVYLGAGNYGFEDAAQFYFDKSAQDLDVGEA 340
#
#
# >BS_ywjD
# Length = 320
#
# Score = 28.1 bits (61), Expect = 8.5
# Identities = 20/72 (27%), Positives = 35/72 (47%), Gaps = 4/72 (5%)
#
# Query: 76 NEEIQNIILGDAYAWKITTLAN-RLFIKPLEKDIRTNMTIITNKRTYEFDIASTELMIGH 134
# + + NI +G AY K T A IK L ++I+ MT+ + +TY L +
# Sbjct: 146 DRSVINIHIGGAYGNKDTATAQFHQNIKQLPQEIKERMTLENDDKTY---TTEETLQVCE 202
#
# Query: 135 ERDLVYVIKFYY 146
# + D+ +V F++
# Sbjct: 203 QEDVPFVFDFHH 214
#
#
Database: myva
Posted date: Sep 16, 2002 2:25 PM
Number of letters in database: 59,019,183
Number of sequences in database: 192,987
Lambda K H
0.326 0.142 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,671,526
Number of Sequences: 192987
Number of extensions: 696380
Number of successful extensions: 2091
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 2068
Number of HSP's gapped (non-prelim): 34
length of query: 157
length of database: 59,019,183
effective HSP length: 100
effective length of query: 57
effective length of database: 39,720,483
effective search space: 2264067531
effective search space used: 2264067531
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (28.1 bits)
S2: 61 (28.1 bits)