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Genomic biology
Bos taurus
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Sus scrofa

UniSTS:75965 Links
SHGC-31353
Homo sapiens chromosome 6;12;9, loci LOC728739, LOC644746, PDCD2, and LOC100132609
Macaca mulatta chromosome 11;4, loci LOC704952 and PDCD2
Pan troglodytes chromosome 12;6, loci LOC743421, LOC741930, and PDCD2

Found by e-PCR in sequences from Homo sapiens, Pan troglodytes and Sus scrofa.

Primer InformationHelp

Forward primer:TGTTTAGGCCCCAAAACGT
Reverse primer:TGCACAAGCCTGCTTATGTC
PCR product size:102 (bp), Homo sapiens
GenBank Accession:G21852 H92637

   Homo sapiens
Name: SHGC-31353
Also known as: EST395078 SGC31353 WI-31353
Polymorphism info:  

Cross References Help
Gene GeneID:100132609
 Symbol:LOC100132609
 Description:similar to programmed cell death 2
 Position:9q32
Gene GeneID:5134
 Symbol:PDCD2
 Description:programmed cell death 2
 Position:6q27
Gene GeneID:644746
 Symbol:LOC644746
 Description:ret finger protein-like 3 pseudogene
 Position:12q23.3
Gene GeneID:728739
 Symbol:LOC728739
 Description:similar to programmed cell death 2
 Position:12q23.3
UniGeneHs.367900 Programmed cell death 2
 Hs.646411 Similar to programmed cell death 2 isoform 2

Mapping InformationHelp
SHGC-31353 Sequence Map: Chr 6|HuRef Map Viewer
  Position: 168397651-168397752 (bp)
 
SHGC-31353 Sequence Map: Chr 6 Map Viewer
  Position: 170734525-170734626 (bp)
 
SHGC-31353 Sequence Map: Chr 6|Celera Map Viewer
  Position: 171687856-171687957 (bp)
 
SHGC-31353 Sequence Map: Chr 9|HuRef Map Viewer
  Position: 86220110-86220211 (bp)
 
SHGC-31353 Sequence Map: Chr 12|HuRef Map Viewer
  Position: 105357645-105357746 (bp)
 
SHGC-31353 Sequence Map: Chr 12 Map Viewer
  Position: 106821319-106821420 (bp)
 
SHGC-31353 Sequence Map: Chr 12|Celera Map Viewer
  Position: 107962504-107962605 (bp)
 
SHGC-31353 NCBI RH Map: Chr 6 Map Viewer
  Position: 1703.9 (cR)
  Lod score: 2.77
 
SHGC-31353 TNG Map: Chr 6 Map Viewer
  Position: 84751 (cR50000)
  Lod score: 7.6
  Reference Interval: 217
 
SGC31353 Whitehead-RH Map: Chr 6 Map Viewer
  Position: 859.2 (cR3000)
  Lod score: P0.70
 
SHGC-31353 Stanford-G3 Map: Chr 6 Map Viewer
  Position: 6707 (cR10000)
  Lod score: F
  Reference Interval: 126
 
SHGC-31353 GeneMap99-G3 Map: Chr 6 Map Viewer
  Position: 7010 (cR10000)
  Lod score: F
  Reference Interval: D6S1581-D6S281
 
SGC31353 GeneMap99-GB4 Map: Chr 6 Map Viewer
  Position: 651.51 (cR3000)
  Lod score: 0.51
  Reference Interval: D6S281-qTEL

Electronic PCR results Help
RefSeq mRNA (2)
NM_002598.2 497 .. 598 (102 bp)  
NM_144781.1 497 .. 598 (102 bp)  
 
mRNA (5 of 6)[Show All Hits]
S78085.1 447 .. 548 (102 bp)  
BC008378.1 491 .. 592 (102 bp)  
AJ420535.1 275 .. 376 (102 bp)  
BC067759.1 405 .. 506 (102 bp)  
AY948416.1 319 .. 420 (102 bp)  
 
Genomic (5 of 16)[Show All Hits]
G21852.1 44 .. 145 (102 bp)  
AL031259.1 65329 .. 65430 (102 bp)  
AC126177.8 17979 .. 18080 (102 bp)  
CH003459.1 105710924 .. 105711025 (102 bp)  
CH003507.1 111814978 .. 111815079 (102 bp)  
 
Low-pass Sequence Sampling (from GenBank HTGS division) (1)
AC136490.1 9782 .. 9883 (102 bp)  
 
ESTs (5 of 151)[Show All Hits]
R81233.1 171 .. 272 (102 bp)  
H92637.1 44 .. 145 (102 bp)  
H93137.1 171 .. 272 (102 bp)  
H97561.1 133 .. 235 (103 bp)  
N20141.1 134 .. 235 (102 bp)  
 
Whole Genome Shotgun sequences (5 of 8)[Show All Hits]
AADD01127776.1 10125 .. 10226 (102 bp)  
AADC01109601.1 48079 .. 48180 (102 bp)  
AADC01065791.1 61556 .. 61657 (102 bp)  
AADB02015505.1 109191 .. 109292 (102 bp)  
AADB02010296.1 30044 .. 30145 (102 bp)  
 

   Macaca mulatta
Name: SHGC-31353
Polymorphism info:  

Cross References Help
Gene GeneID:696380
 Symbol:PDCD2
 Description:programmed cell death 2
 Position: 
Gene GeneID:704952
 Symbol:LOC704952
 Description:similar to programmed cell death 2 isoform 2
 Position: 
UniGeneMmu.14755 Similar to programmed cell death 2 isoform 1

Mapping InformationHelp
SHGC-31353 Sequence Map: Chr 4 Map Viewer
  Position: 167589353-167589454 (bp)
 
SHGC-31353 Sequence Map: Chr 11 Map Viewer
  Position: 108920803-108920904 (bp)

   Pan troglodytes
Name: SHGC-31353
Polymorphism info:  

Cross References Help
Gene GeneID:465124
 Symbol:PDCD2
 Description:programmed cell death 2
 Position: 
Gene GeneID:741930
 Symbol:LOC741930
 Description:similar to programmed cell death 2
 Position: 
Gene GeneID:743421
 Symbol:LOC743421
 Description:hypothetical protein LOC743421
 Position: 

Mapping InformationHelp
SHGC-31353 Sequence Map: Chr 6 Map Viewer
  Position: 173839246-173839347 (bp)
 
SHGC-31353 Sequence Map: Chr 12 Map Viewer
  Position: 109110658-109110759 (bp)

Electronic PCR results Help
RefSeq mRNA (2)
XM_520603.2 595 .. 696 (102 bp)  
XR_021450.1 312 .. 413 (102 bp)  
 
Genomic (2)
CM000326.1 109110658 .. 109110759 (102 bp)  
CM000320.1 173839246 .. 173839347 (102 bp)  
 
Whole Genome Shotgun sequences (4)
AADA01358261.1 4180 .. 4281 (102 bp)  
AADA01229752.1 24646 .. 24747 (102 bp)  
AACZ02106631.1 24761 .. 24862 (102 bp)  
AACZ02077981.1 74452 .. 74553 (102 bp)  
 

   Sus scrofa
 
Polymorphism info:  

Cross References Help
UniGeneSsc.11912 MRNA, clone:UTR010007G10, expressed in uterus


Electronic PCR results Help
ESTs (5 of 26)[Show All Hits]
CF178165.1 413 .. 514 (102 bp)  
CF787360.1 113 .. 214 (102 bp)  
BP141263.1 466 .. 567 (102 bp)  
BP143939.1 451 .. 552 (102 bp)  
BP144796.1 447 .. 548 (102 bp)  
 

 

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