NCBI CDD pfam01844

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CDD

Structure

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pfam01844: HNH

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HNH endonuclease

Links

Source:	pfam
Taxonomy:	root
PubMed:	3 links
Protein:	Related Protein
	Related Structure
	Architectures
	Representatives
Superfamily:	cl00083

Statistics

PSSM-Id:	110813
View PSSM:	pfam01844
Aligned:	206 rows
Created:	30-Sep-2008
Updated:	30-Oct-2008

Structure


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PubMed References

Amino acid sequence motif of group I intron endonucleases is conserved in open reading frames of group II introns.Trends Biochem. Sci. 1994 Oct; 19(10):402-404
Self-splicing group I and group II introns encode homologous (putative) DNA endonucleases of a new family.Protein Sci. 1994 Jul; 3(7):1117-1120
Statistical modeling and analysis of the LAGLIDADG family of site-specific endonucleases and identification of an intein that encodes a site-specific endonuclease of the HNH family.Nucleic Acids Res. 1997 Nov 15; 25(22):4626-4638

pfam01844 is a member of the superfamily cl00083.

Sequence Alignment?

Format: Row Display: Color Bits: Type Selection:

                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
1U3E_M       54 QVHRLVAIHFCEGYEE-----GLVVDHKD----------GNKDNNLSTNLRWVTQKinvENQMSRGTL 106
gi 81671005  17 YICEYCHS------PErlsanRFTIDHVIp--------kSLGGSDAFNNLALACRR---CNERRYNFV 67
gi 81771585  20 ELCEYCHA--SEKWQYv----LFTVDHIIp--------lSQNGEDTIENLALACFH---CNRRKSAKT 70
gi 75090177  22 PDCHVCGEPIDYQADHld-plSFTIDHITp--------lALGGTDTLDNIGAAHRK---CNRDKSDKP 77
gi 81759079  28 NLCGICGKPVDKTLKYph-plSAAIDHIVpi-------aKGGHPSALENLQLTHWQ---CNRQKSDKL 84
gi 75077871  30 GICGKPIDKRLKAPDPl----SPVVDHIIpi-------nKGGHPSAMDNLQLAHWT---CNRQKSDKL 83
gi 75157000  68 WSCHGCLC--------------YEYDHIVp--------fSKGGESTVDNCQILQTR---VNRSKSDKA 110
gi 75191519  80 GNCNGCLC--------------FEYDHIVp--------ySKGGESIAENCQILQTR---VNRFKSAQE 122
gi 75160308 101 VGCPGCLC--------------HDYDHIVp--------ySKGGKSTLENCQVLQAT---VNRSKGNKT 143
gi 75085553  44 ARAPHPRS--------------FEVDHIVstdealrmgwSEEEADALDNCQGVCRQ---CNRAKSSGV 94

Citing CDD

Marchler-Bauer A, Anderson JB, Derbyshire MK, DeWeese-Scott C, Gonzales NR, Gwadz M, Hao L, He S, Hurwitz DI, Jackson JD, Ke Z, Krylov D, Lanczycki CJ, Liebert CA, Liu C, Lu F, Lu S, Marchler GH, Mullokandov M, Song JS, Thanki N, Yamashita RA, Yin JJ, Zhang D, Bryant SH. (2007) CDD: a conserved domain database for interactive domain family analysis. Nucleic Acids Res. 35: D237-40

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