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BUILD 129
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Reference SNP(refSNP) Cluster Report: rs4399536          
refSNP ID: rs4399536
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:111/129
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:C/T
Ancestral Allele:T
Clinical Association:unknown
HGVS Names
NT_037887.4:g.385419T>C
Links

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss10843950 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs4399536 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss5879073SC_JCM|NT_010552.10_464557fwd/BC/Tcaactagacaagaaaataaaataaaaggcatcagattggaaagaaagaactgaaaccgtc01/10/0310/10/03111Genomicunknown
ss10843950BCM_SSAHASNP|chr16.NT_037887.3_385419fwd/BC/Tcaactagacaagaaaataaaataaaaggcatcagattggaaagaaagaactgaaaccgtc06/30/0310/10/03123Genomicunknown
ss11325547SC_JCM|chr16.NT_037887.3_385419fwd/BC/Tcaactagacaagaaaataaaataaaaggcatcagattggaaagaaagaactgaaaccgtc07/03/0310/10/03123Genomicunknown
ss19355090CSHL-HAPMAP|CSHL-HuDD-200402.chr16.NT_037887.3_385419fwd/BC/Tcaactagacaagaaaataaaataaaaggcatcagattggaaagaaagaactgaaaccgtc02/20/0403/04/04123Genomicunknown
ss40674718ABI|hCV2984033fwd/BC/Tcaactagacaagaaaataaaataaaaggcatcagattggaaagaaagaactgaaaccgtc07/17/0507/17/05126Genomicunknown
ss78765444HGSV|Cor18507_SNV_20070510.chr16_385419fwd/BC/Tcaactagacaagaaaataaaataaaaggcatcagattggaaagaaagaactgaaaccgtc10/19/0710/20/07129Genomicunknown
ss82044792HGSV|Cor18555_SNV_20070510.chr16_385419fwd/BC/Tcaactagacaagaaaataaaataaaaggcatcagattggaaagaaagaactgaaaccgtc11/27/0712/02/07130Genomicunknown
ss82423964HGSV|Cor18956_SNV_20070510.chr16_385419fwd/BC/Tcaactagacaagaaaataaaataaaaggcatcagattggaaagaaagaactgaaaccgtc11/30/0712/02/07130Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs4399536|allelePos=1825|totalLen=3206|taxid=9606|snpclass=1|alleles='C/T'|mol=Genomic|build=130
 AGCATAAttt tttttttctt tttttaagat ggagtcttgt tctgtcaccc aggctggagt
 gcaagggcac gatctcagct cactgcaacc tctgcctccc gggttcaagg gattctcctg
 cctcagcctc ccgagtagct gggattacag gtgcatgcca ccacacccag ctaatttttt
 gtatttttag tatagacagg gtttcgccat gtcggccagt ctggtctcga actcctgacc
 tcaggcgata cacccaccgc agcttcctaa agtgctggga tgacaggcgc gagccactgc
 gcccagtcTC AGCATGTTTT TAATGTGCAA AATAAAATAC AAGGAAATAA AAATATAAAA
 AACTATACTG AAATAAATTA TCAAAATATT GTAGGCCAgg ccgggcgcag tggctcacac
 ctgtaatccc agcactttag gaagctgcgg tgggtgtatc gcctgaggtc aggagttcga
 gaccagactg gccaacatgg cgaaaccctg tctatactaa gaatacaaaa aattagctgg
 gtgtggtggc gagcacctgt aatcccagct actcgggagg ctgaggcagg agaattgctt
 gaacccagga ggtgggggtt gcagtgagct gagatcatgc ccttgcactc cagcctgggc
 aacagagtaa gacgatgtct caccaacaaa caaacaaaaT ATTTTAGGCa gcggggcgtg
 gtggctcaca cccgtaatcc catcactttg ggaggccaag gcgggttgat cacaaggtca
 agagatcgag accatcctgg ccaacatggt gaaaccccat ctctactaaa aaacaaaaat
 tagccgggtg tggtggcgcg tgcctgtaat ctcagctact caggaggctg aggcaggaga
 atcgcttgaa ttgggaggcg gaggttgcag tgagccagga ttacaccact gcactccagc
 ctggcaacag agtgagactc catctcaaaa acaaaaacaa aaacaaaaac aaaaTATTTT
 AGgccaagtg cggtggctca ggcctgtttt cctagttact ggggaggctg aggcaggagg
 atcgcttgag gctgggaggt gaaggctgca gttgagctat gactgcacca ctgcactcca
 gcccaggtga cagaacgaga ccctgttgct aaaaaaacaa aaataaaaca ttaaaaaaTG
 TACGATATAG Tggccgggcg cggtggctca tgcctgtaat cccagcactt tgggaggctg
 aggcgggcag atcacaaggt caggagatcg agaccatcct ggctaacatg gtgaaacccc
 gtctctacta aaaatacaaa aaaaaaaaaa aattagccag gcgtggtggc aggcgcctat
 agtcccagct ggaggctgag gcaggaggat ggcgtgaacc cgggaggcgg agcttgcagt
 gagccgagat cgcgccactg cactccaacc tgggtgacag agtgagactt cgtctcaaaa
 aaaaaaCAGA GTACGCTATA GTAATATCTG CTTTttCCTt tttgcaatag ctttattggg
 atacaattga catactatac acttcactca tatatttttt gtttatttac tatttttttt
 caagagacag ggtcttgcta tattgccctg gctagtctca aactcctggg cttatgtgat
 cctcctgcct cagcttccca aattgttggg ataataggcc tgagcAAGAG TCCAGCCTCT
 AAAAAGAAAG AAAGTcactt ctttatacca tagtactgca aattctagtc agagcaacta
 gacaagaaaa taaaataaaa ggca
 Y
 tcagattgga aagaaagaac tgaaaccgtc tctattccca tatgacatga tgttttttct
 tttctttttt tttttttttt tgagacagag tcttgctctg ttgcccaggc tggagtgcag
 tggcatgctc tcggctcatt gtgagctcca cctcctgggt tcaagccatt ctcctgcctc
 agcctcctga gtagctggga ttacaggcat gcaccaccat gtccagctaa tttttgtatt
 tttagtagag acggggtttc accacgttga ccaggctggt cttgaactcc tgacctcgtg
 atccgctcgc ctcgggctcc caaagtgctg ggattacaga catgagccag tgtgccccgc
 tccatatgac acaatcttat acaaagaaat tcccaaggaa ttaattaaaa actattagaa
 ctaataaatg catttggaag gcttgcagga tacaagatca atacacaaag ctcaattgtt
 ggccaggcgt ggtggctcac gcctgtaatc ccagcccttt gggaggccaa ggcgggtgga
 tcacctgagg ccacgagttt gagaccagcc tggccaacat ggcgaaaccc cgtctctact
 aaaaataaaa aaaaacacca gccaggtgtg gtggcaagct cctgtaattc catctactcg
 ggagcctgag gcaggataac tgcttgaacc tgggaggcgg aggctgcagt gagcagagat
 atgccattat tgcactccag cctgggcaac aagagcgaca ctctgtctga aaacaaacaa
 acctcaattg tctgttatac acttgcaatg gacaattcaa ataagaaaac aattccattc
 acaatagcag caaaaagaac aGGCTTTTTC AAGACTCATT AAGTAAGTTC TAGCAGTGGG
 AGACCTAACC ATTTCAAATA GTAGCATGCT GTGCTATCTA CCCAAATATT ACCGtacctg
 tgaattctgt tggtgacaaa gtcacaggcc ctgcaactat gaatgtggct tcttccttat
 atccgcaatt gaatgaatta gaggaatgca gtcacatcag aggccatttg agaataaagg
 tcggattttt ccccattcaa attcacagac cAggctcaca tctgtaatcc cagcaccttg
 ggaagccaag gcaggaggat ttcttgatcc caggagtttg agaccagcat gggcaacata
 gggaggcccc atctctacaa aaaattaaaa tattagctgg ttgtggtggc gcgggtctgt
 agtcccgcct actcgTCCTG GCCGCAGAGT CAGCGTCTCC GGAGCGCCTC CTTCTCCCGC
 CCTGGGGCTC ACGTGGGAAT TTCACCCTCC ATTGGAGGGG GCTCAGACCA GGGCTTCTAG
 A

  GeneView back to top
GeneView via analysis of contig annotation: NME4 non-metastatic cells 4, protein expressed in
View variations for gene:
Include clinically associated: in gene region cSNP has frequency double hit
Group
Label		Contig->mRNAGene Model (contig mRNA transcript) Color Legend
referenceNT_037887->NM_005009
function
"
Group
label		Contig-->mRNA-->ProteinContig
position		mRNA
orientation		mRNA
pos		FunctiondbSNP
allele		Protein
residue		Codon
pos		Amino acid
pos
referenceNT_037887->NM_005009->NP_005000385419forward5' near gene

GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  rs4399536 maps exactly once on NCBI human chromosome 16
ChromosomeContig
accession		Contig
position		Chromosome
position		Hit
orientation		Contig
Allele		Assembly
Type		Group
label		Contig
label		Neighbor
SNP		SNP_flank
position
16NW_001838339.22259955364062minusAalt_assembly_8HuRefHuRefview1824
16NT_037887.4385419385419plusTref_assemblyreferencereferenceview1824
16NW_926018.1361615645965plusTalt_assembly_1CeleraCeleraview1824

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_037887
dbSNP Blast Analysis
GenBank HTGS Finished:
Z97634.26

  Population Diversity back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation		PCR results confirmed
in multiple reactions		Homozygotes detected
in individual genotype data
byClusterUNKNOWNUNKNOWNUNKNOWN

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Revised: May 25, 2006 1:38 PM .