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BUILD 129
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Reference SNP(refSNP) Cluster Report: rs35115079          
refSNP ID: rs35115079
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:126/129
Map to Genome Build:36.3
Allele
Variation Class:DIP:
deletion/insertion polymorphism
RefSNP Alleles:-/T
Ancestral Allele:Not available
Clinical Association:unknown
HGVS Names
Links

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss50205585 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs35115079 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss50205585DEVINE_LAB|INDEL_GP35_WGS_439943fwd/-/Tgtttttttgtgtgtgggtgtttttttttttttttttagatggagtctcgatctgtcgcca01/24/0601/24/06126GenomicTunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs35115079|allelePos=401|totalLen=801|taxid=9606|snpclass=2|alleles='-/T'|mol=Genomic|build=126
 CTGCCACCAC CAGGCCCGGC TCATTATTTC ATTTTTTGTG GAGACGGGGT TTTGCCATGT
 TGCCCAGGCT GGTCTTGAAC TCCTGGCCTC GAGCAATCCT CCAGCCTCGG CTTCCCGGAG
 TGCTGGGATT ACAGGTGTGA GCCACCATGT CTGGCCCAAG TTGGTATCAT TTTAAACCAC
 TACGTTTCTG GGAATTCGTT ACAGCAGCTG CAGGAAAGAT TTTGGGAAAT GGAAAGCTGT
 TTCCAGGGCC TGGGGACAGG TGGGACCCCA GCTCAGGGTC CGTGTACTTG GGGACCATTT
 CCTGCTCTGC TGTGGTCTAC TGGACCGTCT GGCATCGCTG TGACCGCATG GGCCGTGCTC
 CATCAATATT GTTTTTTTGT GTGTGGGTGT TTTTTTTTTT
 N
 TTTTTTAGAT GGAGTCTCGA TCTGTCGCCA GGCTGGAGTG CAGTGGCGTG ATCTCAGCTC
 ACTGCAACCT CAGTGTCCCG GGTTCAAGCG ATTCTCCTGC CTCAGCCTCC CCAGTAGCTG
 GGACTACAGG CGTCTGCCCC CACGCCCGGC CAATTTTTTG TATTTTTAGT GGAGATGGGG
 TTTCACCATG TTGGCCAGGC TGGTCTTGAA CTCCTGACCT CGTGATCCGC CCGCCTTGGC
 CTCCGAAAAT GCTGGGATTA CAGGCATGAG CCACTGCGCC CGGCCCTGTT TTTATCTTTT
 AGAGACAGGG TCTCCTTCTG TCGCCCAGGC TGGAGTGCAG TGGTTTGATC TCGGCTCACT
 GCATCCTCTG CCTCCTGAGT TCAAGCGATC CTACTGCCTT

  GeneView back to top
GeneView: no link established by analysis of contig annotation
GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  rs35115079 maps exactly once on NCBI human chromosome 19
ChromosomeContig
accession		Contig
position		Chromosome
position		Hit
orientation		Contig
Allele		Assembly
Type		Group
label		Contig
label		Neighbor
SNP		SNP_flank
position
19NW_927140.1117977117977minusAalt_assembly_1CeleraCeleraview400
19NW_001838476.1457639468440plusTalt_assembly_8HuRefHuRefview400
19NT_011255.14638445^638446649445^649446plus-ref_assemblyreferencereferenceview400..400

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_011255
dbSNP Blast Analysis

  Population Diversity back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation		PCR results confirmed
in multiple reactions		Homozygotes detected
in individual genotype data
UNKNOWNUNKNOWNUNKNOWN

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Revised: May 25, 2006 1:38 PM .