Reference SNP(refSNP) Cluster Report: rs10152647

Reference SNP(refSNP) Cluster Report: rs10152647

refSNP ID: rs10152647
Organism:	human (Homo sapiens)
Molecule Type:	Genomic
Created/Updated in build:	119/129
Map to Genome Build:	36.3

Allele
Variation Class:	SNP: single nucleotide polymorphism
RefSNP Alleles:	C/T
Ancestral Allele:	C
Clinical Association:	unknown

HGVS Names
NM_002420.4:c.-64+9675G>A
NT_010194.16:g.2174742C>T

Links

, Linkout

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss43763323 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs10152647 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Success Rate
ss14012484	WI_SSAHASNP\|chr15.NT_010194.16_2174742	fwd/B	C/T	aaagccctcttacgaggtgggctctgctgg	tccagatatgtcaaggggactcagcccttc	11/05/03	11/22/03	119	Genomic	unknown
ss21267476	SSAHASNP\|WGSA-200403-chr15.chr15.NT_010194.16_2174742	fwd/B	C/T	aaagccctcttacgaggtgggctctgctgg	tccagatatgtcaaggggactcagcccttc	03/19/04	03/19/04	121	Genomic	unknown
ss43763323	ABI\|hCV2891048	fwd/B	C/T	aaagccctcttacgaggtgggctctgctgg	tccagatatgtcaaggggactcagcccttc	07/18/05	07/18/05	126	Genomic	unknown
ss82302100	HGSV\|Cor18555_SNV_20070510.chr15_29171477	fwd/B	C/T	aaagccctcttacgaggtgggctctgctgg	tccagatatgtcaaggggactcagcccttc	11/27/07	12/02/07	130	Genomic	unknown
ss82625014	HGSV\|Cor18956_SNV_20070510.chr15_29171477	fwd/B	C/T	aaagccctcttacgaggtgggctctgctgg	tccagatatgtcaaggggactcagcccttc	11/30/07	12/03/07	130	Genomic	unknown
ss90109063	BCMHGSC_JDW\|JWB-0836414	fwd/B	C/T	aaagccctcttacgaggtgggctctgctgg	tccagatatgtcaaggggactcagcccttc	02/26/08	02/29/08	129	Genomic	unknown

Fasta sequence (Legend)

 CGCTGTGTTC CTCTGGGGCT GTCCTGACCC AGTGTGGTCT GTGGTGACCA GTGACTCATG
 GTCAGTGTCT GGGCTGCTCA TATATTTATA GATGAACGTT CCCACACATC TCACAACTCA
 GCTTGTAAAA CTTGGGAGGA TTATGGGAAA ACAAAACAAA ACAAAACAAA AAACACCTTC
 TTCAAAAGTT CAGTGGGGCC TTTGTAACCT GGACCACTTT GAATGTCACA CAAAAAGCCC
 AGCATGCATG TGGCTCAACT GTTAGCTTGC AAAGCCCTCT TACGAGGTGG GCTCTGCTGG
 Y
 TCCAGATATG TCAAGGGGAC TCAGCCCTTC GGAGCTCCCA GGTGGGCCCA AGCCCCCATA
 AAGTGGTCTA GGAGGGGCCG GGATGAGGGA GAAAGTTTTT CTCTCTGGAC TGAGGAGGCT
 CTTGAGGGGT GGGGTGGGGT GGGGTGGGAC ACTGGCTTAG CCCTGAAGGA TGAGAGGATT
 GGTCCAGGCA GGAGCTCTGG GGAAAATGCT CTTGGGAGTG GGAACAGCAG GGGCAAGGCA
 GAGTGCAGGG TCTCATTTCT TAACTGTGGT GACCACCGTG ACGGTCCCAC AGAATAAAGG

GeneView

GeneView via analysis of contig annotation: TRPM1 transient receptor potential cation channel, subfamily M, member 1

View variations for gene:

Include clinically associated:

in gene region cSNP has frequency double hit

Group
Label

Contig->mRNA

Gene Model (contig mRNA transcript) Color Legend

reference

NT_010194->NM_002420

function

Group label	Contig-->mRNA-->Protein	Contig position	mRNA orientation	Function


reference	NT_010194->NM_002420->NP_002411	2174742	reverse	intron

GeneView: no link established by BLAST analysis of mRNA sequences

Integrated Maps:

NCBI MapViewer: rs10152647 maps exactly once on NCBI human chromosome 15

Chromosome	Contig accession	Contig position	Chromosome position	Hit orientation	Contig Allele	Assembly Type	Group label	Contig label	Neighbor SNP	SNP_flank position
15	NW_001838206.1	464626	8561221	plus	T	alt_assembly_8	HuRef	HuRef	view	300
15	NW_925829.1	457639	9109661	plus	T	alt_assembly_1	Celera	Celera	view	300
15	NT_010194.16	2174742	29171477	plus	C	ref_assembly	reference	reference	view	300

NCBI Resource Links

Submitter-Referenced
GenBank
NT_010194

dbSNP Blast Analysis

Population Diversity

There is no frequency data.

Validation Summary:

Validation status

Marker displays
Mendelian segregation

PCR results confirmed
in multiple reactions

Homozygotes detected
in individual genotype data

DoubleHit found by: BCM_SSAHASNP

UNKNOWN

Disclaimer Privacy statement

Revised: May 25, 2006 1:38 PM .