Reference SNP(refSNP) Cluster Report: rs326463

Reference SNP(refSNP) Cluster Report: rs326463

refSNP ID: rs326463
Organism:	human (Homo sapiens)
Molecule Type:	Genomic
Created/Updated in build:	79/129
Map to Genome Build:	36.3

Allele
Variation Class:	SNP: single nucleotide polymorphism
RefSNP Alleles:	A/G
Ancestral Allele:	A
Clinical Association:	unknown

HGVS Names
NM_001270.2:c.54-687C>T
NT_034772.5:g.656503G>A

Links

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss44599805 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs326463 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Success Rate
ss417431	KWOK\|OVLP-000621-288158	fwd/T	A/G	acgtgtatacacacacataaaaaagcaatt	acatttcataaactatccttttttccattt	06/30/00	10/10/03	79	Genomic	99 %
ss422029	KWOK\|OVLP-000621-302248	fwd/T	A/G	acgtgtatacacacacataaaaaagcaatt	acatttcataaactatccttttttccattt	06/30/00	10/10/03	85	Genomic	99 %
ss638497	SC_JCM\|AC026778.2_38766	fwd/T	A/G	acgtgtatacacacacataaaaaagcaatt	acatttcataaactatccttttttccattt	07/12/00	10/10/03	80	Genomic	unknown
ss1087235	KWOK\|OVLP-000804-108915	fwd/T	A/G	acgtgtatacacacacataaaaaagcaatt	acatttcataaactatccttttttccattt	09/02/00	10/10/03	86	Genomic	99 %
ss1088268	KWOK\|OVLP-000804-115118	fwd/T	A/G	acgtgtatacacacacataaaaaagcaatt	acatttcataaactatccttttttccattt	09/02/00	10/10/03	86	Genomic	99 %
ss1804634	KWOK\|OVLP-000925-671639	fwd/T	A/G	acgtgtatacacacacataaaaaagcaatt	acatttcataaactatccttttttccattt	10/05/00	10/10/03	87	Genomic	99 %
ss1805055	KWOK\|OVLP-000925-675944	fwd/T	A/G	acgtgtatacacacacataaaaaagcaatt	acatttcataaactatccttttttccattt	10/05/00	10/10/03	87	Genomic	99 %
ss10191792	BCM_SSAHASNP\|chr5.NT_034772.4_656503	fwd/T	A/G	acgtgtatacacacacataaaaaagcaatt	acatttcataaactatccttttttccattt	06/27/03	10/10/03	116	Genomic	unknown
ss11697900	WI_SSAHASNP\|chr5.NT_034772.4_656503	fwd/T	A/G	acgtgtatacacacacataaaaaagcaatt	acatttcataaactatccttttttccattt	07/03/03	10/10/03	116	Genomic	unknown
ss44599805	ABI\|hCV811097	fwd/T	A/G	acgtgtatacacacacataaaaaagcaatt	acatttcataaactatccttttttccattt	07/19/05	07/19/05	126	Genomic	unknown

Fasta sequence (Legend)

 AATAAAGTAA GAAATGTGTG AAGAAAAGAT TAAATGTGTT AAAAAAAATT CTTACAGTAA
 CAGGCAGAAA TTTATTTGTA GTTTCTGCTT GTTTTCAAGT TTCCATCTCT ATCACTCCAG
 GAGAACATAA TTTATTATAA CCGAGCTATG ATAAAATATA ATTTATTTTA AAAAATCAGT
 AACACTGCTT GTCTGAGAAA ATCACTTATT AATAAGTTCT TTGTGGATCT GTAGCAATAA
 ATCTGAAATA GCAAATTCTC ATATTTCCTA ACGTGTATAC ACACACATAA AAAAGCAATT
 R
 ACATTTCATA AACTATCCTT TTTTCCATTT CTAATTTTTA GTCCAAGATA GAGCAGAAAT
 AGTCTGGACT AAACAGTTGA TTATATAATT ATCCCCAAGG TCATTTGTTT ATATGTTGAA
 AACTAGGGCA TTAAATTTCT GGTACATATG GTTGACTCCG CTTTTGATGT AATTTCATTT
 GGCTTTATGA GAAACCACAG GTAATACAGT TTACAGATAT ACAAGAAAAT ACAAGTTTCC
 TGTCCTCTTC TGTAATTTTC TAAAATGCCA CCAGATGGAG GTATTACTCT AAGACAACAC

GeneView

GeneView via analysis of contig annotation: CHD1 chromodomain helicase DNA binding protein 1

View variations for gene:

Include clinically associated:

in gene region cSNP has frequency double hit

Group
Label

Contig->mRNA

Gene Model (contig mRNA transcript) Color Legend

reference

NT_034772->NM_001270

function

Group label	Contig-->mRNA-->Protein	Contig position	mRNA orientation	Function


reference	NT_034772->NM_001270->NP_001261	656503	reverse	intron

GeneView: no link established by BLAST analysis of mRNA sequences

Integrated Maps:

NCBI MapViewer: rs326463 maps exactly once on NCBI human chromosome 5

Chromosome	Contig accession	Contig position	Chromosome position	Hit orientation	Contig Allele	Assembly Type	Group label	Contig label	Neighbor SNP	SNP_flank position
5	NW_001838952.2	40547802	93428906	minus	C	alt_assembly_8	HuRef	HuRef	view	300
5	NW_922729.1	27525437	94125593	plus	A	alt_assembly_1	Celera	Celera	view	300
5	NT_034772.5	656503	98269389	plus	G	ref_assembly	reference	reference	view	300

NCBI Resource Links

Submitter-Referenced
GenBank
NT_034772 AC012624 AC021449 AC022121 AC022121.4 AC026778.2

dbSNP Blast Analysis

Population Diversity

There is no frequency data.

Validation Summary:

Validation status

Marker displays
Mendelian segregation

PCR results confirmed
in multiple reactions

Homozygotes detected
in individual genotype data

DoubleHit found by: BCM_SSAHASNP, NCBI

UNKNOWN

Disclaimer Privacy statement

Revised: May 25, 2006 1:38 PM .