Ticket #161: configure.log

File configure.log, 79.5 kB (added by Vemuri, Aparna, 5 months ago)

Added by email2trac

Line 
1 Configuring MPICH2 version 1.0.7 with '--prefix=/share/apps/mpich2-install' '--with-pm=gforker' 'CPPFLAGS=-DpgiFortran' 'F77=/share/apps/pgi/linux86-64/6.0/bin/pgf77' 'F90=/share/apps/pgi/linux86-64/6.0/bin/pgf90'
2 Running on system: Linux plume 2.6.18-8.el5 #1 SMP Fri Jan 26 14:15:14 EST 2007 x86_64 x86_64 x86_64 GNU/Linux
3 Executing mpich2prereq in /root/libraries/mpich2-1.0.7/src/mpid/ch3 with
4 Executing mpich2prereq in /root/libraries/mpich2-1.0.7/src/mpid/ch3/channels/sock
5 sourcing /root/libraries/mpich2-1.0.7/src/pm/gforker/mpich2prereq
6 checking for gcc... gcc
7 checking for C compiler default output file name... a.out
8 checking whether the C compiler works... yes
9 checking whether we are cross compiling... no
10 checking for suffix of executables...
11 checking for suffix of object files... o
12 checking whether we are using the GNU C compiler... yes
13 checking whether gcc accepts -g... yes
14 checking for gcc option to accept ANSI C... none needed
15 checking whether C compiler accepts option -O2... yes
16 checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes
17 checking for type of weak symbol support... pragma weak
18 checking whether __attribute__ ((weak)) allowed... yes
19 checking for multiple weak symbol support... yes
20 checking whether we are using the GNU Fortran 77 compiler... no
21 checking whether /share/apps/pgi/linux86-64/6.0/bin/pgf77 accepts -g... yes
22 checking whether Fortran 77 compiler accepts option -O2... yes
23 checking whether routines compiled with -O2 can be linked with ones compiled without -O2... no
24 checking how to get verbose linking output from /share/apps/pgi/linux86-64/6.0/bin/pgf77... -v
25 checking for Fortran libraries of /share/apps/pgi/linux86-64/6.0/bin/pgf77...  -L/share/apps/pgi/linux86-64/6.0/lib -L/usr/lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.1.2 -lpgftnrtl -lnspgc -lpgc -lm
26 checking whether /share/apps/pgi/linux86-64/6.0/bin/pgf77 accepts the FLIBS found by autoconf... yes
27 checking whether C can link with  -L/share/apps/pgi/linux86-64/6.0/lib -L/usr/lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.1.2 -lpgftnrtl -lnspgc -lpgc -lm... yes
28 checking for linker for Fortran main programs... Use Fortran to link programs
29 checking for Fortran 77 name mangling... lower underscore
30 checking what libraries are needed to link Fortran programs with C routines that use stdio... none
31 checking that f works as the extension for Fortran 90 program... yes
32 checking whether we are using the GNU Fortran 90 compiler... no
33 checking whether /share/apps/pgi/linux86-64/6.0/bin/pgf90 accepts -g... yes
34 checking for extension for Fortran 90 programs... f90
35 checking whether the Fortran 90 compiler (/share/apps/pgi/linux86-64/6.0/bin/pgf90  ) works... yes
36 checking whether the Fortran 90 compiler (/share/apps/pgi/linux86-64/6.0/bin/pgf90  ) is a cross-compiler... no
37 checking whether Fortran 90 works with Fortran 77... yes
38 checking whether Fortran accepts ! for comments... yes
39 checking for include directory flag for Fortran... -I
40 checking for Fortran 77 flag for library directories... -L
41 checking for which Fortran libraries are needed to link C with Fortran... none
42 checking whether Fortran compiler processes .F files with C preprocessor... yes
43 checking that f works as the extension for Fortran 90 program... yes
44 checking whether we are using the GNU Fortran 90 compiler... (cached) no
45 checking whether /share/apps/pgi/linux86-64/6.0/bin/pgf90 accepts -g... (cached) yes
46 checking for extension for Fortran 90 programs... f90
47 checking whether the Fortran 90 compiler (/share/apps/pgi/linux86-64/6.0/bin/pgf90  ) works... yes
48 checking whether the Fortran 90 compiler (/share/apps/pgi/linux86-64/6.0/bin/pgf90  ) is a cross-compiler... no
49 checking for Fortran 90 module extension... mod
50 checking for Fortran 90 module include flag... -I
51 checking whether Fortran 90 accepts f90 suffix... yes
52 checking whether Fortran 90 compiler accepts option -O2... yes
53 checking whether routines compiled with -O2 can be linked with ones compiled without -O2... no
54 checking whether Fortran 90 compiler processes .F90 files with C preprocessor... yes
55 checking what libraries are needed to link Fortran90 programs with C routines that use stdio... none
56 checking for f90 compiler vendor... pgi
57 checking for c++... c++
58 checking whether we are using the GNU C++ compiler... yes
59 checking whether c++ accepts -g... yes
60 checking whether the C++ compiler c++ can build an executable... yes
61 checking whether the compiler supports exceptions... yes
62 checking whether the compiler recognizes bool as a built-in type... yes
63 checking whether the compiler implements namespaces... yes
64 checking whether <iostream> available... yes
65 checking whether the compiler implements the namespace std... yes
66 checking whether <math> available... no
67 checking for GNU g++ version... 4 . 1
68 checking whether C++ compiler accepts option -O2... yes
69 checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes
70 checking for perl... /usr/bin/perl
71 checking for ar... ar
72 checking for ranlib... ranlib
73 checking for etags... etags
74 checking for etags argument to specify language... --language=c
75 checking for killall... killall
76 checking for a BSD-compatible install... /usr/bin/install -c
77 checking whether install works... yes
78 checking whether install breaks libraries... no
79 checking whether mkdir -p works... yes
80 checking for make... make
81 checking whether clock skew breaks make... no
82 checking whether make supports include... yes
83 checking whether make allows comments in actions... yes
84 checking for virtual path format... VPATH
85 checking whether make sets CFLAGS... no
86 checking for bash... /bin/sh
87 checking whether /bin/sh supports arrays... yes
88 checking for doctext... false
89 checking for location of doctext style files... unavailable
90 checking for an ANSI C-conforming const... yes
91 checking for volatile... yes
92 checking for restrict... __restrict
93 checking for inline... inline
94 checking whether __attribute__ allowed... yes
95 checking whether __attribute__((format)) allowed... yes
96 checking whether byte ordering is bigendian... no
97 checking whether C compiler allows unaligned doubles... yes
98 checking whether gcc supports __func__... yes
99 Using gcc to determine dependencies
100 checking whether long double is supported... yes
101 checking whether long long is supported... yes
102 checking for max C struct integer alignment... eight
103 checking for max C struct floating point alignment... sixteen
104 checking for max C struct alignment of structs with doubles... eight
105 checking for max C struct floating point alignment with long doubles... sixteen
106 configure: WARNING: Structures containing long doubles may be aligned differently from structures with floats or longs.  MPICH2 does not handle this case automatically and you should avoid assumed extents for structures containing float types.
107 checking if alignment of structs with doubles is based on position... no
108 checking if alignment of structs with long long ints is based on position... no
109 checking if double alignment breaks rules, find actual alignment... no
110 checking for alignment restrictions on pointers... int or better
111 checking for egrep... grep -E
112 checking for ANSI C header files... no
113 checking for sys/types.h... yes
114 checking for sys/stat.h... yes
115 checking for stdlib.h... yes
116 checking for string.h... yes
117 checking for memory.h... yes
118 checking for strings.h... yes
119 checking for inttypes.h... yes
120 checking for stdint.h... yes
121 checking for unistd.h... yes
122 checking for char... yes
123 checking size of char... 1
124 checking for short... yes
125 checking size of short... 2
126 checking for int... yes
127 checking size of int... 4
128 checking for long... yes
129 checking size of long... 8
130 checking for long long... yes
131 checking size of long long... 8
132 checking for float... yes
133 checking size of float... 4
134 checking for double... yes
135 checking size of double... 8
136 checking for long double... yes
137 checking size of long double... 16
138 checking for wchar_t... yes
139 checking size of wchar_t... 4
140 checking for void *... yes
141 checking size of void *... 8
142 checking for size of float int... 8
143 checking for size of double int... 12
144 checking for size of long int... 12
145 checking for size of short int... 6
146 checking for size of 2 int... 8
147 checking for size of long double int... 20
148 checking for sys/bitypes.h... yes
149 checking for int16_t... yes
150 checking for int32_t... yes
151 checking for int64_t... yes
152 checking for size of Fortran type integer... 4
153 checking for size of Fortran type real... 4
154 checking for size of Fortran type double precision... 8
155 checking whether integer*1 is supported... yes
156 checking whether integer*2 is supported... yes
157 checking whether integer*4 is supported... yes
158 checking whether integer*8 is supported... yes
159 checking whether integer*16 is supported... yes
160 checking whether real*4 is supported... yes
161 checking whether real*8 is supported... yes
162 checking whether real*16 is supported... yes
163 checking for C type matching Fortran integer... int
164 checking for size of MPI_Status... 20
165 checking for values of Fortran logicals... True is -1 and False is 0
166 checking how to run the C preprocessor... gcc -E
167 checking for Fortran 90 integer kind for 8-byte integers... 8
168 checking for bool... yes
169 checking size of bool... 1
170 checking how to run the C++ preprocessor... c++ -E
171 checking for complex... yes
172 checking for Complex... yes
173 checking size of Complex... 8
174 checking for DoubleComplex... yes
175 checking size of DoubleComplex... 16
176 checking for LongDoubleComplex... yes
177 checking size of LongDoubleComplex... 32
178 checking if char * pointers use byte addresses... yes
179 checking for alignment restrictions on int64_t... no
180 checking for alignment restrictions on int32_t... no
181 checking for size of MPI_BSEND_OVERHEAD... 95
182 checking for gcc __asm__ and pentium cmpxchgl instruction... no
183 checking for gcc __asm__ and AMD x86_64 cmpxchgq instruction... yes
184 checking for gcc __asm__ and IA64 xchg4 instruction... no
185 checking for ANSI C header files... (cached) no
186 checking for stdlib.h... (cached) yes
187 checking for stdarg.h... yes
188 checking for sys/types.h... (cached) yes
189 checking for inttypes.h... (cached) yes
190 checking for limits.h... yes
191 checking for stddef.h... yes
192 checking for errno.h... yes
193 checking for sys/socket.h... yes
194 checking for sys/time.h... yes
195 checking for unistd.h... (cached) yes
196 checking for endian.h... yes
197 checking for assert.h... yes
198 checking for sys/uio.h... yes
199 checking for size_t... yes
200 checking for setitimer... yes
201 checking for alarm... yes
202 checking for vsnprintf... yes
203 checking for vsprintf... yes
204 checking whether vsnprintf needs a declaration... no
205 checking for strerror... yes
206 checking for snprintf... yes
207 checking whether snprintf needs a declaration... no
208 checking for va_copy... yes
209 checking for working alloca.h... yes
210 checking for alloca... yes
211 checking for strdup... yes
212 checking whether strdup needs a declaration... no
213 checking for clock_gettime... no
214 checking for clock_getres... no
215 checking for gethrtime... no
216 checking for gettimeofday... yes
217 sourcing /root/libraries/mpich2-1.0.7/src/mpid/ch3/setup_device
218 RUNNING SETUP_DEVICE FOR THE CH3 DEVICE
219 sourcing /root/libraries/mpich2-1.0.7/src/mpid/ch3/channels/sock/setup_channel
220 RUNNING SETUP_CHANNEL FOR THE SOCK CHANNEL
221 sourcing /root/libraries/mpich2-1.0.7/src/mpid/common/sock/setup
222 RUNNING SETUP FOR THE SOCK INTERFACE
223 checking for pthread.h... yes
224 checking for pthread_yield... no
225 checking for library containing pthread_key_create... -lpthread
226 checking for pthread_cleanup_push... no
227 checking whether pthread_cleanup_push is available (may be a macro in pthread.h)... no
228 checking for sched_yield... yes
229 checking for yield... no
230 checking for usleep... yes
231 checking for sleep... yes
232 checking for select... yes
233 RUNNING CONFIGURE FOR CH3 DEVICE
234 checking for make... make
235 checking whether clock skew breaks make... no
236 checking whether make supports include... yes
237 checking whether make allows comments in actions... yes
238 checking for virtual path format... VPATH
239 checking whether make sets CFLAGS... yes
240 checking for gcc... gcc
241 checking for C compiler default output file name... a.out
242 checking whether the C compiler works... yes
243 checking whether we are cross compiling... no
244 checking for suffix of executables...
245 checking for suffix of object files... o
246 checking whether we are using the GNU C compiler... yes
247 checking whether gcc accepts -g... yes
248 checking for gcc option to accept ANSI C... none needed
249 checking how to run the C preprocessor... gcc -E
250 checking for assert.h... yes
251 checking for limits.h... yes
252 checking for string.h... yes
253 checking for sys/types.h... yes
254 checking for sys/uio.h... yes
255 checking for uuid/uuid.h... yes
256 checking for time.h... yes
257 checking for ctype.h... yes
258 checking for unistd.h... yes
259 checking for arpa/inet.h... yes
260 checking for sys/socket.h... yes
261 checking for net/if.h... yes
262 checking for egrep... grep -E
263 checking for ANSI C header files... yes
264 checking for sys/types.h... (cached) yes
265 checking for sys/stat.h... yes
266 checking for stdlib.h... yes
267 checking for string.h... (cached) yes
268 checking for memory.h... yes
269 checking for strings.h... yes
270 checking for inttypes.h... yes
271 checking for stdint.h... yes
272 checking for unistd.h... (cached) yes
273 checking for pid_t... yes
274 checking for inet_pton... yes
275 checking for gethostname... yes
276 checking whether gethostname needs a declaration... no
277 checking for CFUUIDCreate... no
278 checking for uuid_generate... no
279 checking for time... yes
280 checking for library containing uuid_generate... -luuid
281 checking whether CPP accepts variable length argument lists... yes
282 checking whether byte ordering is bigendian... no
283 checking whether we can use struct ifconf... yes
284 checking for int... yes
285 checking size of int... 4
286 checking for long... yes
287 checking size of long... 8
288 checking for long long... yes
289 checking size of long long... 8
290 checking for void *... yes
291 checking size of void *... 8
292 checking for etags... etags
293 configure: creating ./config.status
294 config.status: creating Makefile
295 config.status: creating src/Makefile
296 config.status: creating util/Makefile
297 config.status: creating util/shm/Makefile
298 config.status: creating util/shmbase/Makefile
299 config.status: creating channels/Makefile
300 config.status: creating localdefs
301 config.status: creating include/mpid_thread.h
302 config.status: creating include/mpidi_ch3_conf.h
303 config.status: include/mpidi_ch3_conf.h is unchanged
304 config.status: executing default-1 commands
305 copying /root/libraries/mpich2-1.0.7/src/mpid/ch3/../common/thread/mpid_thread_mpe.c to src/mpid_thread.c
306 configure: configuring in util/sock
307 configure: running /bin/sh '/root/libraries/mpich2-1.0.7/src/mpid/ch3/util/sock/configure' --prefix=/share/apps/mpich2-install  '--prefix=/share/apps/mpich2-install' '--with-pm=gforker' 'CPPFLAGS=-DpgiFortran' 'F77=/share/apps/pgi/linux86-64/6.0/bin/pgf77' 'F90=/share/apps/pgi/linux86-64/6.0/bin/pgf90' 'CC=gcc' 'CFLAGS= -O2' --cache-file=/dev/null --srcdir=/root/libraries/mpich2-1.0.7/src/mpid/ch3/util/sock
308 RUNNING CONFIGURE FOR CH3 UTIL SOCK ROUTINES
309 checking for make... make
310 checking whether clock skew breaks make... no
311 checking whether make supports include... yes
312 checking whether make allows comments in actions... yes
313 checking for virtual path format... VPATH
314 checking whether make sets CFLAGS... yes
315 checking for ar... ar
316 checking for ranlib... ranlib
317 checking for gcc... gcc
318 checking for C compiler default output file name... a.out
319 checking whether the C compiler works... yes
320 checking whether we are cross compiling... no
321 checking for suffix of executables...
322 checking for suffix of object files... o
323 checking whether we are using the GNU C compiler... yes
324 checking whether gcc accepts -g... yes
325 checking for gcc option to accept ANSI C... none needed
326 checking how to run the C preprocessor... gcc -E
327 checking for assert.h... yes
328 checking for limits.h... yes
329 checking for string.h... yes
330 checking for sys/types.h... yes
331 checking for sys/uio.h... yes
332 checking for time.h... yes
333 checking for ctype.h... yes
334 checking for unistd.h... yes
335 checking for arpa/inet.h... yes
336 checking for sys/socket.h... yes
337 checking for net/if.h... yes
338 checking for egrep... grep -E
339 checking for ANSI C header files... yes
340 checking for sys/types.h... (cached) yes
341 checking for sys/stat.h... yes
342 checking for stdlib.h... yes
343 checking for string.h... (cached) yes
344 checking for memory.h... yes
345 checking for strings.h... yes
346 checking for inttypes.h... yes
347 checking for stdint.h... yes
348 checking for unistd.h... (cached) yes
349 checking for pid_t... yes
350 checking for inet_pton... yes
351 checking for gethostname... yes
352 checking whether gethostname needs a declaration... no
353 checking whether CPP accepts variable length argument lists... yes
354 checking whether byte ordering is bigendian... no
355 checking whether we can use struct ifconf... yes
356 checking for int... yes
357 checking size of int... 4
358 checking for long... yes
359 checking size of long... 8
360 checking for long long... yes
361 checking size of long long... 8
362 checking for void *... yes
363 checking size of void *... 8
364 checking for etags... etags
365 configure: creating ./config.status
366 config.status: creating Makefile
367 config.status: creating ch3usockconf.h
368 config.status: ch3usockconf.h is unchanged
369 config.status: executing default-1 commands
370 Updating dependency directories .deps
371 configure: configuring in channels/sock
372 configure: running /bin/sh '/root/libraries/mpich2-1.0.7/src/mpid/ch3/channels/sock/configure' --prefix=/share/apps/mpich2-install  '--prefix=/share/apps/mpich2-install' '--with-pm=gforker' 'CPPFLAGS=-DpgiFortran' 'F77=/share/apps/pgi/linux86-64/6.0/bin/pgf77' 'F90=/share/apps/pgi/linux86-64/6.0/bin/pgf90' 'CC=gcc' 'CFLAGS= -O2' --cache-file=/dev/null --srcdir=/root/libraries/mpich2-1.0.7/src/mpid/ch3/channels/sock
373 RUNNING CONFIGURE FOR THE SOCK CHANNEL
374 checking for a BSD-compatible install... /usr/bin/install -c
375 checking whether install works... yes
376 checking for ranlib... ranlib
377 checking for gcc... gcc
378 checking for C compiler default output file name... a.out
379 checking whether the C compiler works... yes
380 checking whether we are cross compiling... no
381 checking for suffix of executables...
382 checking for suffix of object files... o
383 checking whether we are using the GNU C compiler... yes
384 checking whether gcc accepts -g... yes
385 checking for gcc option to accept ANSI C... none needed
386 checking whether install breaks libraries... no
387 checking whether mkdir -p works... yes
388 checking for make... make
389 checking whether clock skew breaks make... no
390 checking whether make supports include... yes
391 checking whether make allows comments in actions... yes
392 checking for virtual path format... VPATH
393 checking whether make sets CFLAGS... yes
394 checking for ar... ar
395 checking for ranlib... ranlib
396 checking for net/if.h... yes
397 checking how to run the C preprocessor... gcc -E
398 checking for netdb.h... yes
399 checking for sys/ioctl.h... yes
400 checking for sys/socket.h... yes
401 checking for sys/sockio.h... no
402 checking for sys/types.h... yes
403 checking for errno.h... yes
404 checking for netinet/in.h... yes
405 configure: creating ./config.status
406 config.status: creating Makefile
407 config.status: creating src/Makefile
408 config.status: creating localdefs
409 config.status: creating include/mpidi_ch3i_sock_conf.h
410 config.status: include/mpidi_ch3i_sock_conf.h is unchanged
411 config.status: executing default-1 commands
412 Updating dependency directories .deps
413 RUNNING CONFIGURE FOR THE SOCK INTERFACE
414 checking for gcc... gcc
415 checking for C compiler default output file name... a.out
416 checking whether the C compiler works... yes
417 checking whether we are cross compiling... no
418 checking for suffix of executables...
419 checking for suffix of object files... o
420 checking whether we are using the GNU C compiler... yes
421 checking whether gcc accepts -g... yes
422 checking for gcc option to accept ANSI C... none needed
423 checking for strerror... yes
424 checking for make... make
425 checking whether clock skew breaks make... no
426 checking whether make supports include... yes
427 checking whether make allows comments in actions... yes
428 checking for virtual path format... VPATH
429 checking whether make sets CFLAGS... yes
430 checking for ar... ar
431 checking for ranlib... ranlib
432 configure: creating ./config.status
433 config.status: creating Makefile
434 config.status: creating localdefs
435 config.status: creating mpidu_sock_conf.h
436 config.status: mpidu_sock_conf.h is unchanged
437 configure: configuring in poll
438 configure: running /bin/sh '/root/libraries/mpich2-1.0.7/src/mpid/common/sock/poll/configure' --prefix=/share/apps/mpich2-install  '--prefix=/share/apps/mpich2-install' '--with-pm=gforker' 'CPPFLAGS=-DpgiFortran' 'F77=/share/apps/pgi/linux86-64/6.0/bin/pgf77' 'F90=/share/apps/pgi/linux86-64/6.0/bin/pgf90' 'CC=gcc' 'CFLAGS= -O2' --cache-file=/dev/null --srcdir=/root/libraries/mpich2-1.0.7/src/mpid/common/sock/poll
439 RUNNING CONFIGURE FOR THE POLL IMPLEMENTATION OF SOCK
440 checking for make... make
441 checking whether clock skew breaks make... no
442 checking whether make supports include... yes
443 checking whether make allows comments in actions... yes
444 checking for virtual path format... VPATH
445 checking whether make sets CFLAGS... yes
446 checking for gcc... gcc
447 checking for C compiler default output file name... a.out
448 checking whether the C compiler works... yes
449 checking whether we are cross compiling... no
450 checking for suffix of executables...
451 checking for suffix of object files... o
452 checking whether we are using the GNU C compiler... yes
453 checking whether gcc accepts -g... yes
454 checking for gcc option to accept ANSI C... none needed
455 checking for inline... inline
456 checking for poll... yes
457 checking how to run the C preprocessor... gcc -E
458 checking for assert.h... yes
459 checking for errno.h... yes
460 checking for fcntl.h... yes
461 checking for limits.h... yes
462 checking for netdb.h... yes
463 checking for netinet/in.h... yes
464 checking for netinet/tcp.h... yes
465 checking for poll.h... yes
466 checking for stdlib.h... yes
467 checking for sys/param.h... yes
468 checking for sys/poll.h... yes
469 checking for sys/types.h... yes
470 checking for sys/uio.h... yes
471 checking for unistd.h... yes
472 checking if struct poll is defined... yes
473 checking if a simple program using poll() can be compiled... yes
474 checking whether bit fields work in ip.h... yes
475 checking for gethostname... yes
476 checking whether gethostname needs a declaration... no
477 checking for library containing socket... none required
478 checking for library containing gethostbyname... none required
479 checking whether socklen_t is defined (in sys/socket.h if present)... yes
480 checking for etags... etags
481 configure: creating ./config.status
482 config.status: creating Makefile
483 config.status: creating localdefs
484 config.status: creating mpidu_socki_conf.h
485 config.status: mpidu_socki_conf.h is unchanged
486 config.status: executing default-1 commands
487 Updating dependency directories .deps
488 Configuring with args --prefix=/share/apps/mpich2-install --with-pm=gforker CPPFLAGS=-DpgiFortran F77=/share/apps/pgi/linux86-64/6.0/bin/pgf77 F90=/share/apps/pgi/linux86-64/6.0/bin/pgf90
489 checking for architecture... LINUX
490 ROMIO home directory is /root/libraries/mpich2-1.0.7/src/mpi/romio
491 checking for gcc... gcc
492 checking for C compiler default output file name... a.out
493 checking whether the C compiler works... yes
494 checking whether we are cross compiling... no
495 checking for suffix of executables...
496 checking for suffix of object files... o
497 checking whether we are using the GNU C compiler... yes
498 checking whether gcc accepts -g... yes
499 checking for gcc option to accept ANSI C... none needed
500 checking whether we are using the GNU Fortran 77 compiler... no
501 checking whether /share/apps/pgi/linux86-64/6.0/bin/pgf77 accepts -g... yes
502 checking how to run the C preprocessor... gcc -E
503 checking for memalign... yes
504 checking Fortran external names
505 Fortran externals have a trailing underscore and are lowercase
506 checking for inline... inline
507 checking how to run the C preprocessor... gcc -E
508 checking for egrep... grep -E
509 checking for ANSI C header files... yes
510 checking for sys/types.h... yes
511 checking for sys/stat.h... yes
512 checking for stdlib.h... yes
513 checking for string.h... yes
514 checking for memory.h... yes
515 checking for strings.h... yes
516 checking for inttypes.h... yes
517 checking for stdint.h... yes
518 checking for unistd.h... yes
519 checking for unistd.h... (cached) yes
520 checking fcntl.h usability... yes
521 checking fcntl.h presence... yes
522 checking for fcntl.h... yes
523 checking malloc.h usability... yes
524 checking malloc.h presence... yes
525 checking for malloc.h... yes
526 checking stddef.h usability... yes
527 checking stddef.h presence... yes
528 checking for stddef.h... yes
529 checking for int... yes
530 checking size of int... 4
531 checking for void *... yes
532 checking size of void *... 8
533 checking for int large enough for pointers... no
534 checking for long long... yes
535 checking size of long long... 8
536 checking for extension for Fortran 90 programs... f90
537 checking for Fortran 90 KIND parameter for 8-byte integers...             8
538 checking that we can use integer*8 to declare MPI_DISPLACMENT_CURRENT... yes
539 Overriding Array test for MPICH2
540 checking for weak symbol support... pragma weak
541 checking that weak symbols are visible to other files... yes
542 checking that the compiler correctly implements weak symbols... yes
543 checking whether struct flock compatible with MPI_Offset... yes
544 checking for pvfs2-config... notfound
545 checking configured file systems... testfs ufs nfs
546 configure: WARNING: File locks may not work with NFS.  See the Installation and
547 users manual for instructions on testing and if necessary fixing this
548 checking for library containing aio_write... -lrt
549 checking signal.h usability... yes
550 checking signal.h presence... yes
551 checking for signal.h... yes
552 checking if aio.h exists and can be compiled... yes
553 checking if sys/aio.h exists and can be compiled... no
554 checking whether aio routines can be used... yes
555 checking for obsolete two-argument aio_write... no
556 checking for obsolete two-argument aio_suspend... no
557 checking for aio_fildes member of aiocb structure... yes
558 checking for aio_whence member of aiocb structure... no
559 checking for aio_handle member of aiocb structure... no
560 checking for aio_reqprio member of aiocb structure... yes
561 checking for aio_sigevent member of aiocb structure... yes
562 checking sys/vfs.h usability... yes
563 checking sys/vfs.h presence... yes
564 checking for sys/vfs.h... yes
565 checking sys/param.h usability... yes
566 checking sys/param.h presence... yes
567 checking for sys/param.h... yes
568 checking sys/mount.h usability... yes
569 checking sys/mount.h presence... yes
570 checking for sys/mount.h... yes
571 checking sys/statvfs.h usability... yes
572 checking sys/statvfs.h presence... yes
573 checking for sys/statvfs.h... yes
574 checking whether struct statfs properly defined... yes
575 checking for f_fstypename member of statfs structure... no
576 checking for sys/stat.h... (cached) yes
577 checking for sys/types.h... (cached) yes
578 checking for unistd.h... (cached) yes
579 checking for stat... yes
580 checking for st_fstype member of stat structure... no
581 checking for sys/types.h... (cached) yes
582 checking for sys/statvfs.h... (cached) yes
583 checking for sys/vfs.h... (cached) yes
584 checking for statvfs... yes
585 checking for f_basetype member of statvfs structure... no
586 checking for unistd.h... (cached) yes
587 checking for large file defines... yes
588 checking whether off64_t is an scalar type... yes
589 checking for strerror... yes
590 checking for doctext... false
591 checking for strdup... yes
592 checking whether strdup needs a declaration... no
593 checking for snprintf... yes
594 checking whether snprintf needs a declaration... no
595 checking for lstat... yes
596 checking whether lstat needs a declaration... yes
597 checking for readlink... yes
598 checking whether readlink needs a declaration... no
599 checking for fsync... yes
600 checking whether fsync needs a declaration... no
601 checking for ftruncate... yes
602 checking whether ftruncate needs a declaration... no
603 checking for unistd.h... (cached) yes
604 checking for large file defines... yes
605 setting SYSDEP_INC to
606 checking for restrict... __restrict
607 checking whether __attribute__ allowed... yes
608 checking whether __attribute__((format)) allowed... yes
609 setting CC to gcc
610 setting F77 to /share/apps/pgi/linux86-64/6.0/bin/pgf77
611 setting TEST_CC to /root/libraries/mpich2-1.0.7/bin/mpicc
612 setting TEST_F77 to /root/libraries/mpich2-1.0.7/bin/mpif77
613 setting CFLAGS to  -O2  -DFORTRANUNDERSCORE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_ROMIOCONF_H -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64
614 setting USER_CFLAGS to
615 setting USER_FFLAGS to
616 configure: creating ./config.status
617 config.status: creating Makefile
618 config.status: creating localdefs
619 config.status: creating mpi-io/Makefile
620 config.status: creating mpi2-other/info/Makefile
621 config.status: creating mpi2-other/array/Makefile
622 config.status: creating adio/common/Makefile
623 config.status: creating test/Makefile
624 config.status: creating test/misc.c
625 config.status: creating test/large_file.c
626 config.status: creating test/runtests
627 config.status: creating util/romioinstall
628 config.status: creating include/mpio.h
629 config.status: creating include/mpiof.h
630 config.status: creating adio/ad_nfs/Makefile
631 config.status: creating adio/ad_ufs/Makefile
632 config.status: creating adio/ad_bgl/Makefile
633 config.status: creating adio/ad_bglockless/Makefile
634 config.status: creating adio/ad_panfs/Makefile
635 config.status: creating adio/ad_xfs/Makefile
636 config.status: creating adio/ad_sfs/Makefile
637 config.status: creating adio/ad_pfs/Makefile
638 config.status: creating adio/ad_testfs/Makefile
639 config.status: creating adio/ad_pvfs/Makefile
640 config.status: creating adio/ad_pvfs2/Makefile
641 config.status: creating adio/ad_gridftp/Makefile
642 config.status: creating adio/ad_lustre/Makefile
643 config.status: creating mpi-io/fortran/Makefile
644 config.status: creating mpi2-other/info/fortran/Makefile
645 config.status: creating mpi2-other/array/fortran/Makefile
646 config.status: creating test/fmisc.f
647 config.status: creating test/fcoll_test.f
648 config.status: creating test/pfcoll_test.f
649 config.status: creating test/fperf.f
650 config.status: creating mpi-io/glue/mpich2/Makefile
651 config.status: creating mpi-io/glue/mpich1/Makefile
652 config.status: creating mpi-io/glue/default/Makefile
653 config.status: creating common/dataloop/Makefile
654 config.status: creating adio/include/romioconf.h
655 config.status: executing default-1 commands
656 RUNNING CONFIGURE FOR THE SIMPLE PMI
657 checking for make... make
658 checking whether clock skew breaks make... no
659 checking whether make supports include... yes
660 checking whether make allows comments in actions... yes
661 checking for virtual path format... VPATH
662 checking whether make sets CFLAGS... yes
663 checking for gcc... gcc
664 checking for C compiler default output file name... a.out
665 checking whether the C compiler works... yes
666 checking whether we are cross compiling... no
667 checking for suffix of executables...
668 checking for suffix of object files... o
669 checking whether we are using the GNU C compiler... yes
670 checking whether gcc accepts -g... yes
671 checking for gcc option to accept ANSI C... none needed
672 checking how to run the C preprocessor... gcc -E
673 checking for unistd.h... yes
674 checking for string.h... yes
675 checking for stdlib.h... yes
676 checking for sys/socket.h... yes
677 checking for strings.h... yes
678 checking for snprintf... yes
679 checking whether snprintf needs a declaration... no
680 checking for sys/types.h... yes
681 checking for sys/param.h... yes
682 checking for sys/socket.h... (cached) yes
683 checking for netinet/in.h... yes
684 checking for netinet/tcp.h... yes
685 checking for sys/un.h... yes
686 checking for netdb.h... yes
687 checking for library containing socket... none required
688 checking for library containing gethostbyname... none required
689 checking for socket... yes
690 checking for setsockopt... yes
691 checking for gethostbyname... yes
692 checking whether socklen_t is defined (in sys/socket.h if present)... yes
693 checking whether struct hostent contains h_addr_list... yes
694 configure: creating ./config.status
695 config.status: creating Makefile
696 config.status: creating localdefs
697 config.status: creating pmiconf.h
698 config.status: pmiconf.h is unchanged
699 RUNNING CONFIGURE FOR THE GFORKER PM
700 checking for gcc... gcc
701 checking for C compiler default output file name... a.out
702 checking whether the C compiler works... yes
703 checking whether we are cross compiling... no
704 checking for suffix of executables...
705 checking for suffix of object files... o
706 checking whether we are using the GNU C compiler... yes
707 checking whether gcc accepts -g... yes
708 checking for gcc option to accept ANSI C... none needed
709 checking for a BSD-compatible install... /usr/bin/install -c
710 checking whether install works... yes
711 checking whether mkdir -p works... yes
712 checking for make... make
713 checking whether clock skew breaks make... no
714 checking whether make supports include... yes
715 checking whether make allows comments in actions... yes
716 checking for virtual path format... VPATH
717 checking whether make sets CFLAGS... yes
718 checking for an ANSI C-conforming const... yes
719 checking for volatile... yes
720 checking for restrict... __restrict
721 checking for inline... inline
722 checking whether __attribute__ allowed... yes
723 checking whether __attribute__((format)) allowed... yes
724 checking for snprintf... yes
725 checking whether snprintf needs a declaration... no
726 checking for strdup... yes
727 checking whether strdup needs a declaration... no
728 checking for setsid... yes
729 checking for isatty... yes
730 checking for getsid... yes
731 checking for library containing socketpair... none required
732 checking how to run the C preprocessor... gcc -E
733 checking for egrep... grep -E
734 checking for ANSI C header files... yes
735 checking for sys/types.h... yes
736 checking for signal.h... yes
737 checking for sys/ptrace.h... yes
738 checking for strsignal... yes
739 checking for sigaction... yes
740 checking for signal... yes
741 checking for sigset... yes
742 checking for struct sigaction... yes
743 checking for string.h... yes
744 checking for sys/time.h... yes
745 checking for unistd.h... yes
746 checking for stdlib.h... yes
747 checking for sys/socket.h... yes
748 checking for wait.h... yes
749 checking for errno.h... yes
750 configure: creating ./config.status
751 config.status: creating Makefile
752 config.status: creating forkerconf.h
753 config.status: forkerconf.h is unchanged
754 configure: configuring in ../util
755 configure: running /bin/sh '/root/libraries/mpich2-1.0.7/src/pm/gforker/../util/configure' --prefix=/share/apps/mpich2-install  '--prefix=/share/apps/mpich2-install' '--with-pm=gforker' 'CPPFLAGS=-DpgiFortran' 'F77=/share/apps/pgi/linux86-64/6.0/bin/pgf77' 'F90=/share/apps/pgi/linux86-64/6.0/bin/pgf90' 'CC=gcc' 'CFLAGS= -O2' --cache-file=/dev/null --srcdir=/root/libraries/mpich2-1.0.7/src/pm/gforker/../util
756 RUNNING CONFIGURE FOR THE PM UTILITIES
757 checking for gcc... gcc
758 checking for C compiler default output file name... a.out
759 checking whether the C compiler works... yes
760 checking whether we are cross compiling... no
761 checking for suffix of executables...
762 checking for suffix of object files... o
763 checking whether we are using the GNU C compiler... yes
764 checking whether gcc accepts -g... yes
765 checking for gcc option to accept ANSI C... none needed
766 checking for make... make
767 checking whether clock skew breaks make... no
768 checking whether make supports include... yes
769 checking whether make allows comments in actions... yes
770 checking for virtual path format... VPATH
771 checking whether make sets CFLAGS... yes
772 checking for ar... ar
773 checking for ranlib... ranlib
774 checking for an ANSI C-conforming const... yes
775 checking for volatile... yes
776 checking for restrict... __restrict
777 checking for inline... inline
778 checking whether __attribute__ allowed... yes
779 checking whether __attribute__((format)) allowed... yes
780 checking for strtol... yes
781 checking for time... yes
782 checking for gettimeofday... yes
783 checking whether struct hostent contains h_addr_list... yes
784 checking how to run the C preprocessor... gcc -E
785 checking for egrep... grep -E
786 checking for ANSI C header files... yes
787 checking for sys/types.h... yes
788 checking for sys/stat.h... yes
789 checking for stdlib.h... yes
790 checking for string.h... yes
791 checking for memory.h... yes
792 checking for strings.h... yes
793 checking for inttypes.h... yes
794 checking for stdint.h... yes
795 checking for unistd.h... yes
796 checking for pid_t... yes
797 checking for setsid... yes
798 checking for isatty... yes
799 checking for getsid... yes
800 checking whether getsid is prototyped in unistd.h... no
801 checking for unsetenv... yes
802 checking for cygwin1.dll in /bin... yes
803 checking for environ in unistd.h... no
804 checking for extern environ in runtime... yes
805 checking for library containing socketpair... none required
806 checking for ANSI C header files... (cached) yes
807 checking for sys/types.h... (cached) yes
808 checking for signal.h... yes
809 checking for sys/ptrace.h... yes
810 checking for sys/uio.h... yes
811 checking for unistd.h... (cached) yes
812 checking whether struct iovec is defined in sys/uio.h... yes
813 checking for strsignal... yes
814 checking whether strsignal needs a declaration... yes
815 checking for snprintf... yes
816 checking for strdup... yes
817 checking for sigaction... yes
818 checking for signal... yes
819 checking for sigset... yes
820 checking for struct sigaction and sa_handler... yes
821 checking whether snprintf needs a declaration... no
822 checking whether strdup needs a declaration... no
823 checking for select... yes
824 checking for sys/select.h... yes
825 checking whether FD_ZERO works... yes
826 checking for string.h... (cached) yes
827 checking for sys/time.h... yes
828 checking for time.h... yes
829 checking for stdlib.h... (cached) yes
830 checking for sys/socket.h... yes
831 checking for wait.h... yes
832 checking for errno.h... yes
833 checking whether socklen_t is defined (in sys/socket.h if present)... yes
834 checking for etags... etags
835 configure: creating ./config.status
836 config.status: creating Makefile
837 config.status: creating test/Makefile
838 config.status: creating pmutilconf.h
839 config.status: pmutilconf.h is unchanged
840 Configuring MPE Profiling System with '--prefix=/share/apps/mpich2-install' '--with-pm=gforker' 'CPPFLAGS=-DpgiFortran' 'F77=/share/apps/pgi/linux86-64/6.0/bin/pgf77' 'F90=/share/apps/pgi/linux86-64/6.0/bin/pgf90' 'CC=gcc' 'CFLAGS= -O2' 'FFLAGS= ' 'MPI_CC=/root/libraries/mpich2-1.0.7/bin/mpicc' 'MPI_F77=/root/libraries/mpich2-1.0.7/bin/mpif77'
841 checking gnumake... yes using --no-print-directory
842 checking BSD 4.4 make... no - whew
843 checking OSF V3 make... no
844 checking for virtual path format... VPATH
845 This MPE build is part of the MPICH2 build
846 checking for gcc... gcc
847 checking for C compiler default output file name... a.out
848 checking whether the C compiler works... yes
849 checking whether we are cross compiling... no
850 checking for suffix of executables...
851 checking for suffix of object files... o
852 checking whether we are using the GNU C compiler... yes
853 checking whether gcc accepts -g... yes
854 checking for gcc option to accept ANSI C... none needed
855 checking whether MPI_CC has been set ... /root/libraries/mpich2-1.0.7/bin/mpicc
856 checking whether we are using the GNU Fortran 77 compiler... no
857 checking whether /share/apps/pgi/linux86-64/6.0/bin/pgf77 accepts -g... yes
858 checking whether MPI_F77 has been set ... /root/libraries/mpich2-1.0.7/bin/mpif77
859 checking how to get verbose linking output from /share/apps/pgi/linux86-64/6.0/bin/pgf77... -v
860 checking for Fortran libraries of /share/apps/pgi/linux86-64/6.0/bin/pgf77...  -lpthread -lrt' -L/share/apps/pgi/linux86-64/6.0/lib -L/usr/lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.1.2 -lrt -lpgftnrtl -lnspgc -lpgc -lm
861 checking whether /share/apps/pgi/linux86-64/6.0/bin/pgf77 accepts the FLIBS found by autoconf... yes
862 checking whether C can link with  -lpthread -lrt' -L/share/apps/pgi/linux86-64/6.0/lib -L/usr/lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.1.2 -lrt -lpgftnrtl -lnspgc -lpgc -lm... no
863 checking for which libraries can be used...  -lpthread -lrt -lpgftnrtl -lnspgc -lpgc -lm
864 checking for linker for Fortran main programs... Use Fortran to link programs
865 checking for Fortran 77 name mangling... lower underscore
866 checking what libraries are needed to link Fortran programs with C routines that use stdio... none
867 checking for Fortran 77 flag for library directories... -L
868 checking for include directory flag for Fortran... -I
869 checking how to run the C preprocessor... gcc -E
870 checking whether ln -s works... yes
871 checking for a BSD-compatible install... /usr/bin/install -c
872 checking whether install works... yes
873 checking for ranlib... ranlib
874 checking whether install breaks libraries... no
875 checking for leftover Makefiles in subpackages ...  "src/misc" "src/callstack" "src/logging" "src/wrappers" "src/collchk" "src/slog2sdk" cleaned
876 configure: creating ./config.status
877 config.status: creating Makefile
878 config.status: creating sbin/mpetestlink
879 config.status: creating sbin/mpetestexec
880 config.status: creating sbin/mpetestexeclog
881 config.status: creating sbin/mpeinstall
882 config.status: creating sbin/mpecheckinstall
883 config.status: creating sbin/mpecheckbuild
884 config.status: creating etc/mpe_help.conf
885 config.status: creating etc/mpe_f77env.conf
886 config.status: creating mpe_conf.h
887 config.status: executing default-1 commands
888 configure: configuring in src/misc
889 configure: running /bin/sh '/root/libraries/mpich2-1.0.7/src/mpe2/src/misc/configure' --prefix=/share/apps/mpich2-install  '--prefix=/share/apps/mpich2-install' '--with-pm=gforker' 'CPPFLAGS=-DpgiFortran' 'F77=/share/apps/pgi/linux86-64/6.0/bin/pgf77' 'F90=/share/apps/pgi/linux86-64/6.0/bin/pgf90' 'CC=gcc' 'CFLAGS= -O2' 'FFLAGS= ' 'MPI_CC=/root/libraries/mpich2-1.0.7/bin/mpicc' 'MPI_F77=/root/libraries/mpich2-1.0.7/bin/mpif77' --cache-file=/dev/null --srcdir=/root/libraries/mpich2-1.0.7/src/mpe2/src/misc
890 Configuring MPE Miscellaneous Library with '--prefix=/share/apps/mpich2-install' '--with-pm=gforker' 'CPPFLAGS=-DpgiFortran' 'F77=/share/apps/pgi/linux86-64/6.0/bin/pgf77' 'F90=/share/apps/pgi/linux86-64/6.0/bin/pgf90' 'CC=gcc' 'CFLAGS= -O2' 'FFLAGS= ' 'MPI_CC=/root/libraries/mpich2-1.0.7/bin/mpicc' 'MPI_F77=/root/libraries/mpich2-1.0.7/bin/mpif77' '--cache-file=/dev/null' '--srcdir=/root/libraries/mpich2-1.0.7/src/mpe2/src/misc'
891 checking gnumake... yes using --no-print-directory
892 checking BSD 4.4 make... no - whew
893 checking OSF V3 make... no
894 checking for virtual path format... VPATH
895 checking build system type... x86_64-unknown-linux-gnu
896 checking host system type... x86_64-unknown-linux-gnu
897 checking for gcc... gcc
898 checking for C compiler default output file name... a.out
899 checking whether the C compiler works... yes
900 checking whether we are cross compiling... no
901 checking for suffix of executables...
902 checking for suffix of object files... o
903 checking whether we are using the GNU C compiler... yes
904 checking whether gcc accepts -g... yes
905 checking for gcc option to accept ANSI C... none needed
906 checking for ar... ar
907 checking for ranlib... ranlib
908 checking how to run the C preprocessor... gcc -E
909 checking for dbx... no
910 checking for gdb... /usr/bin/gdb
911 checking for egrep... grep -E
912 checking for ANSI C header files... yes
913 checking for an ANSI C-conforming const... yes
914 checking for sysinfo... yes
915 checking for uname... yes
916 checking for gethostbyname... yes
917 checking for sys/types.h... yes
918 checking for sys/stat.h... yes
919 checking for stdlib.h... yes
920 checking for string.h... yes
921 checking for memory.h... yes
922 checking for strings.h... yes
923 checking for inttypes.h... yes
924 checking for stdint.h... yes
925 checking for unistd.h... yes
926 checking for unistd.h... (cached) yes
927 checking for stdlib.h... (cached) yes
928 checking for string.h... (cached) yes
929 checking netdb.h usability... yes
930 checking netdb.h presence... yes
931 checking for netdb.h... yes
932 checking sys/systeminfo.h usability... no
933 checking sys/systeminfo.h presence... no
934 checking for sys/systeminfo.h... no
935 checking for sys/types.h... (cached) yes
936 checking for sighandler_t... no
937 checking for kill... yes
938 checking whether kill needs a declaration... no
939 configure: creating ./config.status
940 config.status: creating Makefile
941 config.status: creating src/Makefile
942 config.status: creating src/dbxerr.c
943 config.status: creating mpe_misc_conf.h
944 configure: configuring in src/callstack
945 configure: running /bin/sh '/root/libraries/mpich2-1.0.7/src/mpe2/src/callstack/configure' --prefix=/share/apps/mpich2-install  '--prefix=/share/apps/mpich2-install' '--with-pm=gforker' 'CPPFLAGS=-DpgiFortran' 'F77=/share/apps/pgi/linux86-64/6.0/bin/pgf77' 'F90=/share/apps/pgi/linux86-64/6.0/bin/pgf90' 'CC=gcc' 'CFLAGS= -O2' 'FFLAGS= ' 'MPI_CC=/root/libraries/mpich2-1.0.7/bin/mpicc' 'MPI_F77=/root/libraries/mpich2-1.0.7/bin/mpif77' --cache-file=/dev/null --srcdir=/root/libraries/mpich2-1.0.7/src/mpe2/src/callstack
946 Configuring MPE CallStack Library with '--prefix=/share/apps/mpich2-install' '--with-pm=gforker' 'CPPFLAGS=-DpgiFortran' 'F77=/share/apps/pgi/linux86-64/6.0/bin/pgf77' 'F90=/share/apps/pgi/linux86-64/6.0/bin/pgf90' 'CC=gcc' 'CFLAGS= -O2' 'FFLAGS= ' 'MPI_CC=/root/libraries/mpich2-1.0.7/bin/mpicc' 'MPI_F77=/root/libraries/mpich2-1.0.7/bin/mpif77' '--cache-file=/dev/null' '--srcdir=/root/libraries/mpich2-1.0.7/src/mpe2/src/callstack'
947 checking gnumake... yes using --no-print-directory
948 checking BSD 4.4 make... no - whew
949 checking OSF V3 make... no
950 checking for virtual path format... VPATH
951 checking for gcc... gcc
952 checking for C compiler default output file name... a.out
953 checking whether the C compiler works... yes
954 checking whether we are cross compiling... no
955 checking for suffix of executables...
956 checking for suffix of object files... o
957 checking whether we are using the GNU C compiler... yes
958 checking whether gcc accepts -g... yes
959 checking for gcc option to accept ANSI C... none needed
960 checking for ar... ar
961 checking for ranlib... ranlib
962 checking how to run the C preprocessor... gcc -E
963 checking for egrep... grep -E
964 checking for ANSI C header files... yes
965 checking for an ANSI C-conforming const... yes
966 checking for inline... inline
967 checking for sys/types.h... yes
968 checking for sys/stat.h... yes
969 checking for stdlib.h... yes
970 checking for string.h... yes
971 checking for memory.h... yes
972 checking for strings.h... yes
973 checking for inttypes.h... yes
974 checking for stdint.h... yes
975 checking for unistd.h... yes
976 checking stdio.h usability... yes
977 checking stdio.h presence... yes
978 checking for stdio.h... yes
979 checking for string.h... (cached) yes
980 checking for unistd.h... (cached) yes
981 checking fcntl.h usability... yes
982 checking fcntl.h presence... yes
983 checking for fcntl.h... yes
984 checking execinfo.h usability... yes
985 checking execinfo.h presence... yes
986 checking for execinfo.h... yes
987 checking whether <execinfo.h> defines backtrace_symbols_fd() ... yes
988 checking if <execinfo.h> links with -Wl,--export-dynamic ... yes
989 checking for fdopen... yes
990 checking whether fdopen needs a declaration... no
991 configure: creating ./config.status
992 config.status: creating Makefile
993 config.status: creating src/Makefile
994 config.status: creating include/mpe_callstack.h
995 config.status: creating etc/mpe_callstack_ldflags.conf
996 config.status: creating mpe_callstack_conf.h
997 configure: configuring in src/logging
998 configure: running /bin/sh '/root/libraries/mpich2-1.0.7/src/mpe2/src/logging/configure' --prefix=/share/apps/mpich2-install  '--prefix=/share/apps/mpich2-install' '--with-pm=gforker' 'CPPFLAGS=-DpgiFortran' 'F77=/share/apps/pgi/linux86-64/6.0/bin/pgf77' 'F90=/share/apps/pgi/linux86-64/6.0/bin/pgf90' 'CC=gcc' 'CFLAGS= -O2' 'FFLAGS= ' 'MPI_CC=/root/libraries/mpich2-1.0.7/bin/mpicc' 'MPI_F77=/root/libraries/mpich2-1.0.7/bin/mpif77' --cache-file=/dev/null --srcdir=/root/libraries/mpich2-1.0.7/src/mpe2/src/logging
999 Configuring MPE Logging Library and Tools with '--prefix=/share/apps/mpich2-install' '--with-pm=gforker' 'CPPFLAGS=-DpgiFortran' 'F77=/share/apps/pgi/linux86-64/6.0/bin/pgf77' 'F90=/share/apps/pgi/linux86-64/6.0/bin/pgf90' 'CC=gcc' 'CFLAGS= -O2' 'FFLAGS= ' 'MPI_CC=/root/libraries/mpich2-1.0.7/bin/mpicc' 'MPI_F77=/root/libraries/mpich2-1.0.7/bin/mpif77' '--cache-file=/dev/null' '--srcdir=/root/libraries/mpich2-1.0.7/src/mpe2/src/logging'
1000 checking gnumake... yes using --no-print-directory
1001 checking BSD 4.4 make... no - whew
1002 checking OSF V3 make... no
1003 checking for virtual path format... VPATH
1004 checking for gcc... gcc
1005 checking for C compiler default output file name... a.out
1006 checking whether the C compiler works... yes
1007 checking whether we are cross compiling... no
1008 checking for suffix of executables...
1009 checking for suffix of object files... o
1010 checking whether we are using the GNU C compiler... yes
1011 checking whether gcc accepts -g... yes
1012 checking for gcc option to accept ANSI C... none needed
1013 checking for ar... ar
1014 checking for ranlib... ranlib
1015 checking how to run the C preprocessor... gcc -E
1016 checking for egrep... grep -E
1017 checking for ANSI C header files... yes
1018 checking for an ANSI C-conforming const... yes
1019 checking whether byte ordering is bigendian... no
1020 checking for sys/types.h... yes
1021 checking for sys/stat.h... yes
1022 checking for stdlib.h... yes
1023 checking for string.h... yes
1024 checking for memory.h... yes
1025 checking for strings.h... yes
1026 checking for inttypes.h... yes
1027 checking for stdint.h... yes
1028 checking for unistd.h... yes
1029 checking stdio.h usability... yes
1030 checking stdio.h presence... yes
1031 checking for stdio.h... yes
1032 checking for stdlib.h... (cached) yes
1033 checking for string.h... (cached) yes
1034 checking for unistd.h... (cached) yes
1035 checking sys/time.h usability... yes
1036 checking sys/time.h presence... yes
1037 checking for sys/time.h... yes
1038 checking for sys/types.h... (cached) yes
1039 checking sys/bitypes.h usability... yes
1040 checking sys/bitypes.h presence... yes
1041 checking for sys/bitypes.h... yes
1042 checking for sys/stat.h... (cached) yes
1043 checking fcntl.h usability... yes
1044 checking fcntl.h presence... yes
1045 checking for fcntl.h... yes
1046 checking for header that defines C99 integer types, intXX_t ... <stdint.h>
1047 checking for inttypes.h... (cached) yes
1048 checking whether <inttypes.h> defines the PRIdXX macros ... yes
1049 checking if <stdint.h> can be behind system headers ... yes
1050 checking for void *... yes
1051 checking size of void *... 8
1052 checking for address-sized integer ... CLOG_int64_t
1053 checking build system type... x86_64-unknown-linux-gnu
1054 checking host system type... x86_64-unknown-linux-gnu
1055 checking for gethostname... yes
1056 checking whether gethostname needs a declaration... no
1057 checking for snprintf... yes
1058 checking whether snprintf needs a declaration... no
1059 checking for mkstemp... yes
1060 checking whether mkstemp needs a declaration... no
1061 checking for srand48... yes
1062 checking whether srand48 needs a declaration... no
1063 checking for lrand48... yes
1064 checking whether lrand48 needs a declaration... no
1065 checking for special C compiler options needed for large files... no
1066 checking for _FILE_OFFSET_BITS value needed for large files... no
1067 checking for _LARGE_FILES value needed for large files... no
1068 checking for O_LARGEFILE for open() ... needs _LARGEFILE64_SOURCE
1069 checking for O_BINARY for open() ... no
1070 checking pthread.h usability... yes
1071 checking pthread.h presence... yes
1072 checking for pthread.h... yes
1073 checking for pthread_mutex_lock in -lpthread... yes
1074 configure: creating ./config.status
1075 config.status: creating Makefile
1076 config.status: creating src/Makefile
1077 config.status: creating include/clog_inttypes.h
1078 config.status: creating include/mpi_null.h
1079 config.status: creating include/mpe_log_thread.h
1080 config.status: creating etc/mpe_log.conf
1081 config.status: creating etc/mpe_nolog.conf
1082 config.status: creating etc/mpe_log_postlib.conf
1083 config.status: creating mpe_logging_conf.h
1084 configure: configuring in src/wrappers
1085 configure: running /bin/sh '/root/libraries/mpich2-1.0.7/src/mpe2/src/wrappers/configure' --prefix=/share/apps/mpich2-install  '--prefix=/share/apps/mpich2-install' '--with-pm=gforker' 'CPPFLAGS=-DpgiFortran' 'F77=/share/apps/pgi/linux86-64/6.0/bin/pgf77' 'F90=/share/apps/pgi/linux86-64/6.0/bin/pgf90' 'CC=gcc' 'CFLAGS= -O2' 'FFLAGS= ' 'MPI_CC=/root/libraries/mpich2-1.0.7/bin/mpicc' 'MPI_F77=/root/libraries/mpich2-1.0.7/bin/mpif77' --cache-file=/dev/null --srcdir=/root/libraries/mpich2-1.0.7/src/mpe2/src/wrappers
1086 Configuring MPE Wrapper Libraries For MPI with '--prefix=/share/apps/mpich2-install' '--with-pm=gforker' 'CPPFLAGS=-DpgiFortran' 'F77=/share/apps/pgi/linux86-64/6.0/bin/pgf77' 'F90=/share/apps/pgi/linux86-64/6.0/bin/pgf90' 'CC=gcc' 'CFLAGS= -O2' 'FFLAGS= ' 'MPI_CC=/root/libraries/mpich2-1.0.7/bin/mpicc' 'MPI_F77=/root/libraries/mpich2-1.0.7/bin/mpif77' '--cache-file=/dev/null' '--srcdir=/root/libraries/mpich2-1.0.7/src/mpe2/src/wrappers'
1087 checking gnumake... yes using --no-print-directory
1088 checking BSD 4.4 make... no - whew
1089 checking OSF V3 make... no
1090 checking for virtual path format... VPATH
1091 checking for gcc... gcc
1092 checking for C compiler default output file name... a.out
1093 checking whether the C compiler works... yes
1094 checking whether we are cross compiling... no
1095 checking for suffix of executables...
1096 checking for suffix of object files... o
1097 checking whether we are using the GNU C compiler... yes
1098 checking whether gcc accepts -g... yes
1099 checking for gcc option to accept ANSI C... none needed
1100 checking for ar... ar
1101 checking for ranlib... ranlib
1102 checking how to run the C preprocessor... gcc -E
1103 checking for egrep... grep -E
1104 checking for ANSI C header files... yes
1105 checking for an ANSI C-conforming const... yes
1106 checking for sys/types.h... yes
1107 checking for sys/stat.h... yes
1108 checking for stdlib.h... yes
1109 checking for string.h... yes
1110 checking for memory.h... yes
1111 checking for strings.h... yes
1112 checking for inttypes.h... yes
1113 checking for stdint.h... yes
1114 checking for unistd.h... yes
1115 checking stdio.h usability... yes
1116 checking stdio.h presence... yes
1117 checking for stdio.h... yes
1118 checking for stdlib.h... (cached) yes
1119 checking for string.h... (cached) yes
1120 checking stdarg.h usability... yes
1121 checking stdarg.h presence... yes
1122 checking for stdarg.h... yes
1123 checking for working alloca.h... yes
1124 checking for alloca... yes
1125 checking for stdarg is correct... yes
1126 checking if compiler accepts prototypes ... yes
1127 checking build system type... x86_64-unknown-linux-gnu
1128 checking host system type... x86_64-unknown-linux-gnu
1129 checking for safe PMPI invocations ... no
1130 checking for the value of MPI_STATUS_SIZE ... 5
1131 configure: creating ./config.status
1132 config.status: creating Makefile
1133 config.status: creating src/Makefile
1134 config.status: creating test/Makefile
1135 config.status: creating etc/mpe_f77env.conf
1136 config.status: creating etc/mpe_mpilog.conf
1137 config.status: creating etc/mpe_mpitrace.conf
1138 config.status: creating mpe_wrappers_conf.h
1139 configure: configuring in src/graphics
1140 configure: running /bin/sh '/root/libraries/mpich2-1.0.7/src/mpe2/src/graphics/configure' --prefix=/share/apps/mpich2-install  '--prefix=/share/apps/mpich2-install' '--with-pm=gforker' 'CPPFLAGS=-DpgiFortran' 'F77=/share/apps/pgi/linux86-64/6.0/bin/pgf77' 'F90=/share/apps/pgi/linux86-64/6.0/bin/pgf90' 'CC=gcc' 'CFLAGS= -O2' 'FFLAGS= ' 'MPI_CC=/root/libraries/mpich2-1.0.7/bin/mpicc' 'MPI_F77=/root/libraries/mpich2-1.0.7/bin/mpif77' --cache-file=/dev/null --srcdir=/root/libraries/mpich2-1.0.7/src/mpe2/src/graphics
1141 Configuring MPE X Graphics Library with '--prefix=/share/apps/mpich2-install' '--with-pm=gforker' 'CPPFLAGS=-DpgiFortran' 'F77=/share/apps/pgi/linux86-64/6.0/bin/pgf77' 'F90=/share/apps/pgi/linux86-64/6.0/bin/pgf90' 'CC=gcc' 'CFLAGS= -O2' 'FFLAGS= ' 'MPI_CC=/root/libraries/mpich2-1.0.7/bin/mpicc' 'MPI_F77=/root/libraries/mpich2-1.0.7/bin/mpif77' '--cache-file=/dev/null' '--srcdir=/root/libraries/mpich2-1.0.7/src/mpe2/src/graphics'
1142 checking gnumake... yes using --no-print-directory
1143 checking BSD 4.4 make... no - whew
1144 checking OSF V3 make... no
1145 checking for virtual path format... VPATH
1146 checking for gcc... gcc
1147 checking for C compiler default output file name... a.out
1148 checking whether the C compiler works... yes
1149 checking whether we are cross compiling... no
1150 checking for suffix of executables...
1151 checking for suffix of object files... o
1152 checking whether we are using the GNU C compiler... yes
1153 checking whether gcc accepts -g... yes
1154 checking for gcc option to accept ANSI C... none needed
1155 checking for ar... ar
1156 checking for ranlib... ranlib
1157 checking how to run the C preprocessor... gcc -E
1158 checking for X... no
1159 configure: WARNING:  Could not find appropriate X windows libraries.  MPE routines that make use of X11 graphics will NOT be built unless you put X windows libraries in your path and reconfigure! 
1160 configure: configuring in src/collchk
1161 configure: running /bin/sh '/root/libraries/mpich2-1.0.7/src/mpe2/src/collchk/configure' --prefix=/share/apps/mpich2-install  '--prefix=/share/apps/mpich2-install' '--with-pm=gforker' 'CPPFLAGS=-DpgiFortran' 'F77=/share/apps/pgi/linux86-64/6.0/bin/pgf77' 'F90=/share/apps/pgi/linux86-64/6.0/bin/pgf90' 'CC=gcc' 'CFLAGS= -O2' 'FFLAGS= ' 'MPI_CC=/root/libraries/mpich2-1.0.7/bin/mpicc' 'MPI_F77=/root/libraries/mpich2-1.0.7/bin/mpif77' --cache-file=/dev/null --srcdir=/root/libraries/mpich2-1.0.7/src/mpe2/src/collchk
1162 Configuring MPE Collective and Datatype Checking Library with '--prefix=/share/apps/mpich2-install' '--with-pm=gforker' 'CPPFLAGS=-DpgiFortran' 'F77=/share/apps/pgi/linux86-64/6.0/bin/pgf77' 'F90=/share/apps/pgi/linux86-64/6.0/bin/pgf90' 'CC=gcc' 'CFLAGS= -O2' 'FFLAGS= ' 'MPI_CC=/root/libraries/mpich2-1.0.7/bin/mpicc' 'MPI_F77=/root/libraries/mpich2-1.0.7/bin/mpif77' '--cache-file=/dev/null' '--srcdir=/root/libraries/mpich2-1.0.7/src/mpe2/src/collchk'
1163 checking gnumake... yes using --no-print-directory
1164 checking BSD 4.4 make... no - whew
1165 checking OSF V3 make... no
1166 checking for virtual path format... VPATH
1167 checking build system type... x86_64-unknown-linux-gnu
1168 checking host system type... x86_64-unknown-linux-gnu
1169 checking for gcc... gcc
1170 checking for C compiler default output file name... a.out
1171 checking whether the C compiler works... yes
1172 checking whether we are cross compiling... no
1173 checking for suffix of executables...
1174 checking for suffix of object files... o
1175 checking whether we are using the GNU C compiler... yes
1176 checking whether gcc accepts -g... yes
1177 checking for gcc option to accept ANSI C... none needed
1178 checking for ar... ar
1179 checking for ranlib... ranlib
1180 checking how to run the C preprocessor... gcc -E
1181 checking for egrep... grep -E
1182 checking for ANSI C header files... yes
1183 checking for an ANSI C-conforming const... yes
1184 checking for sys/types.h... yes
1185 checking for sys/stat.h... yes
1186 checking for stdlib.h... yes
1187 checking for string.h... yes
1188 checking for memory.h... yes
1189 checking for strings.h... yes
1190 checking for inttypes.h... yes
1191 checking for stdint.h... yes
1192 checking for unistd.h... yes
1193 checking stdio.h usability... yes
1194 checking stdio.h presence... yes
1195 checking for stdio.h... yes
1196 checking for stdlib.h... (cached) yes
1197 checking for string.h... (cached) yes
1198 checking for unistd.h... (cached) yes
1199 checking for working alloca.h... yes
1200 checking for alloca... yes
1201 configure: creating ./config.status
1202 config.status: creating Makefile
1203 config.status: creating src/Makefile
1204 config.status: creating test/Makefile
1205 config.status: creating etc/mpe_mpicheck.conf
1206 config.status: creating mpe_collchk_conf.h
1207 configure: configuring in src/slog2sdk
1208 configure: running /bin/sh '/root/libraries/mpich2-1.0.7/src/mpe2/src/slog2sdk/configure' --prefix=/share/apps/mpich2-install  '--prefix=/share/apps/mpich2-install' '--with-pm=gforker' 'CPPFLAGS=-DpgiFortran' 'F77=/share/apps/pgi/linux86-64/6.0/bin/pgf77' 'F90=/share/apps/pgi/linux86-64/6.0/bin/pgf90' 'CC=gcc' 'CFLAGS= -O2' 'FFLAGS= ' 'MPI_CC=/root/libraries/mpich2-1.0.7/bin/mpicc' 'MPI_F77=/root/libraries/mpich2-1.0.7/bin/mpif77' --cache-file=/dev/null --srcdir=/root/libraries/mpich2-1.0.7/src/mpe2/src/slog2sdk
1209 Configuring SLOG2SDK with '--prefix=/share/apps/mpich2-install' '--with-pm=gforker' 'CPPFLAGS=-DpgiFortran' 'F77=/share/apps/pgi/linux86-64/6.0/bin/pgf77' 'F90=/share/apps/pgi/linux86-64/6.0/bin/pgf90' 'CC=gcc' 'CFLAGS= -O2' 'FFLAGS= ' 'MPI_CC=/root/libraries/mpich2-1.0.7/bin/mpicc' 'MPI_F77=/root/libraries/mpich2-1.0.7/bin/mpif77' '--cache-file=/dev/null' '--srcdir=/root/libraries/mpich2-1.0.7/src/mpe2/src/slog2sdk'
1210 checking gnumake... yes using --no-print-directory
1211 checking BSD 4.4 make... no - whew
1212 checking OSF V3 make... no
1213 checking for virtual path format... VPATH
1214 checking for a BSD-compatible install... /usr/bin/install -c
1215 checking whether install works... yes
1216 checking if CLASSPATH is set... no, good to go
1217 checking build system type... x86_64-unknown-linux-gnu
1218 checking host system type... x86_64-unknown-linux-gnu
1219 checking for java in user's PATH... found /usr/bin/java
1220 checking if /usr/bin/java works... yes
1221 checking if /usr/bin/java runs simple jar file... yes
1222 checking if /usr/bin/java runs simple Swing class... yes
1223 checking if /usr/bin/java runs simple Swing jar file... yes
1224 checking for Java version... java full version "1.6.0_07-b06", i.e. Java 2 SDK
1225 checking for cygpath... no
1226 creating sample logfiles from source
1227 checking for leftover Makefiles in subpackages ... none
1228 configure: creating ./config.status
1229 config.status: creating Makefile
1230 config.status: creating sbin/install-package
1231 config.status: creating bin/slog2print
1232 config.status: creating bin/slog2navigator
1233 config.status: creating bin/slog2filter
1234 config.status: creating bin/slog2updater
1235 config.status: creating bin/logconvertor
1236 config.status: creating bin/jumpshot
1237 config.status: creating bin/clogprint
1238 config.status: creating bin/clogTOslog2
1239 config.status: creating bin/clog2print
1240 config.status: creating bin/clog2TOslog2
1241 configure: configuring in trace_rlog
1242 configure: running /bin/sh '/root/libraries/mpich2-1.0.7/src/mpe2/src/slog2sdk/trace_rlog/configure' --prefix=/share/apps/mpich2-install  '--prefix=/share/apps/mpich2-install' '--with-pm=gforker' 'CPPFLAGS=-DpgiFortran' 'F77=/share/apps/pgi/linux86-64/6.0/bin/pgf77' 'F90=/share/apps/pgi/linux86-64/6.0/bin/pgf90' 'CC=gcc' 'CFLAGS= -O2' 'FFLAGS= ' 'MPI_CC=/root/libraries/mpich2-1.0.7/bin/mpicc' 'MPI_F77=/root/libraries/mpich2-1.0.7/bin/mpif77' '--cache-file=/dev/null' '--srcdir=/root/libraries/mpich2-1.0.7/src/mpe2/src/slog2sdk' --cache-file=/dev/null --srcdir=/root/libraries/mpich2-1.0.7/src/mpe2/src/slog2sdk/trace_rlog
1243 Configuring TRACE_RLOG implementation with '--prefix=/share/apps/mpich2-install' '--with-pm=gforker' 'CPPFLAGS=-DpgiFortran' 'F77=/share/apps/pgi/linux86-64/6.0/bin/pgf77' 'F90=/share/apps/pgi/linux86-64/6.0/bin/pgf90' 'CC=gcc' 'CFLAGS= -O2' 'FFLAGS= ' 'MPI_CC=/root/libraries/mpich2-1.0.7/bin/mpicc' 'MPI_F77=/root/libraries/mpich2-1.0.7/bin/mpif77' '--srcdir=/root/libraries/mpich2-1.0.7/src/mpe2/src/slog2sdk' '--cache-file=/dev/null' '--srcdir=/root/libraries/mpich2-1.0.7/src/mpe2/src/slog2sdk/trace_rlog' 'CXXFLAGS= -O2' 'CXX=c++'
1244 checking gnumake... yes using --no-print-directory
1245 checking BSD 4.4 make... no - whew
1246 checking OSF V3 make... no
1247 checking for virtual path format... VPATH
1248 checking for gcc... gcc
1249 checking for C compiler default output file name... a.out
1250 checking whether the C compiler works... yes
1251 checking whether we are cross compiling... no
1252 checking for suffix of executables...
1253 checking for suffix of object files... o
1254 checking whether we are using the GNU C compiler... yes
1255 checking whether gcc accepts -g... yes
1256 checking for gcc option to accept ANSI C... none needed
1257 checking how to run the C preprocessor... gcc -E
1258 checking for egrep... grep -E
1259 checking for ANSI C header files... yes
1260 checking for sys/types.h... yes
1261 checking for sys/stat.h... yes
1262 checking for stdlib.h... yes
1263 checking for string.h... yes
1264 checking for memory.h... yes
1265 checking for strings.h... yes
1266 checking for inttypes.h... yes
1267 checking for stdint.h... yes
1268 checking for unistd.h... yes
1269 checking for stdlib.h... (cached) yes
1270 checking stdio.h usability... yes
1271 checking stdio.h presence... yes
1272 checking for stdio.h... yes
1273 checking for string.h... (cached) yes
1274 checking ctype.h usability... yes
1275 checking ctype.h presence... yes
1276 checking for ctype.h... yes
1277 checking errno.h usability... yes
1278 checking errno.h presence... yes
1279 checking for errno.h... yes
1280 checking for an ANSI C-conforming const... yes
1281 checking for void *... yes
1282 checking size of void *... 8
1283 checking for int... yes
1284 checking size of int... 4
1285 checking for long... yes
1286 checking size of long... 8
1287 checking for long long... yes
1288 checking size of long long... 8
1289 checking for __int64... no
1290 checking size of __int64... 0
1291 checking whether byte ordering is bigendian... no
1292 checking build system type... x86_64-unknown-linux-gnu
1293 checking host system type... x86_64-unknown-linux-gnu
1294 checking for sed... sed
1295 checking for a sed that does not truncate output... /bin/sed
1296 checking for ld used by gcc... /usr/bin/ld
1297 checking if the linker (/usr/bin/ld) is GNU ld... yes
1298 checking for /usr/bin/ld option to reload object files... -r
1299 checking for BSD-compatible nm... /usr/bin/nm -B
1300 checking whether ln -s works... yes
1301 checking how to recognise dependent libraries... pass_all
1302 checking dlfcn.h usability... yes
1303 checking dlfcn.h presence... yes
1304 checking for dlfcn.h... yes
1305 checking whether we are using the GNU C++ compiler... yes
1306 checking whether c++ accepts -g... yes
1307 checking how to run the C++ preprocessor... c++ -E
1308 checking whether we are using the GNU Fortran 77 compiler... no
1309 checking whether /share/apps/pgi/linux86-64/6.0/bin/pgf77 accepts -g... yes
1310 checking the maximum length of command line arguments... 32768
1311 checking command to parse /usr/bin/nm -B output from gcc object... ok
1312 checking for objdir... .libs
1313 checking for ar... ar
1314 checking for ranlib... ranlib
1315 checking for strip... strip
1316 checking if gcc static flag  works... yes
1317 checking if gcc supports -fno-rtti -fno-exceptions... no
1318 checking for gcc option to produce PIC... -fPIC
1319 checking if gcc PIC flag -fPIC works... yes
1320 checking if gcc supports -c -o file.o... yes
1321 checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
1322 checking whether -lc should be explicitly linked in... no
1323 checking dynamic linker characteristics... GNU/Linux ld.so
1324 checking how to hardcode library paths into programs... immediate
1325 checking whether stripping libraries is possible... yes
1326 checking if libtool supports shared libraries... yes
1327 checking whether to build shared libraries... yes
1328 checking whether to build static libraries... no
1329 configure: creating libtool
1330 appending configuration tag "CXX" to libtool
1331 checking for ld used by c++... /usr/bin/ld -m elf_x86_64
1332 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
1333 checking whether the c++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
1334 checking for c++ option to produce PIC... -fPIC
1335 checking if c++ PIC flag -fPIC works... yes
1336 checking if c++ supports -c -o file.o... yes
1337 checking whether the c++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
1338 checking dynamic linker characteristics... GNU/Linux ld.so
1339 checking how to hardcode library paths into programs... immediate
1340 checking whether stripping libraries is possible... yes
1341 appending configuration tag "F77" to libtool
1342 checking if libtool supports shared libraries... yes
1343 checking whether to build shared libraries... yes
1344 checking whether to build static libraries... no
1345 checking for /share/apps/pgi/linux86-64/6.0/bin/pgf77 option to produce PIC... -fPIC
1346 checking if /share/apps/pgi/linux86-64/6.0/bin/pgf77 PIC flag -fPIC works... yes
1347 checking if /share/apps/pgi/linux86-64/6.0/bin/pgf77 supports -c -o file.o... yes
1348 checking whether the /share/apps/pgi/linux86-64/6.0/bin/pgf77 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
1349 checking dynamic linker characteristics... pgf77-Warning-Unknown switch: -print-search-dirs
1350 pgf77-Warning-No files to process
1351 GNU/Linux ld.so
1352 checking how to hardcode library paths into programs... immediate
1353 checking whether stripping libraries is possible... yes
1354 checking for malloc in -lefence... no
1355 checking for strstr... yes
1356 checking target system type... x86_64-unknown-linux-gnu
1357 checking for javah in user's PATH... not found
1358 checking for javah in known locations... not found
1359 configure: WARNING:  Invalid JNI include dir, exit!
1360 configure: WARNING: SLOG2SDK: No sub-package has been configured
1361 MPE2:  "src/misc" "src/callstack" "src/logging" "src/wrappers" "src/collchk" "src/slog2sdk" have been configured
1362 checking the sizeof MPI_Offset... 8
1363 checking whether the Fortran Offset type works with Fortran77... yes
1364 checking whether the Fortran Offset type works with Fortran90... yes
1365 Running Configure for F90 Type routines
1366 checking for cc... gcc
1367 checking whether the C compiler sets its return status correctly... yes
1368 checking for an ANSI C-conforming const... no
1369 checking that f works as the extension for Fortran 90 program... yes
1370 checking for Fortran 90 compiler default output file name... a.out
1371 checking whether the Fortran 90 compiler works... yes
1372 checking whether we are cross compiling... no
1373 checking for suffix of executables...
1374 checking for suffix of object files... o
1375 checking whether we are using the GNU Fortran 90 compiler... no
1376 checking whether /share/apps/pgi/linux86-64/6.0/bin/pgf90 accepts -g... yes
1377 checking whether Fortran 90 accepts f90 suffix... yes
1378 checking for precision and range of reals...  6 , 37
1379 checking for precision and range of double precision...  15 , 307
1380 checking for range of integers...  9
1381 checking whether we are using the GNU Fortran 77 compiler... no
1382 checking whether /share/apps/pgi/linux86-64/6.0/bin/pgf77 accepts -g... yes
1383 checking for linker for Fortran main programs... Use Fortran to link programs
1384 checking for Fortran 77 name mangling... lower underscore
1385 checking for available integer kinds and ranges...  2 , 1, 4 , 2, 9 , 4, 18 , 8,
1386  {  2 , 1 , 1 }, {  4 , 2 , 2 }, {  9 , 4 , 4 }, {  18 , 8 , 8 },
1387 configure: creating ./config.status
1388 config.status: creating mpif90model.h
1389 configure: creating ./config.status
1390 config.status: creating Makefile
1391 config.status: creating src/Makefile
1392 config.status: creating src/include/Makefile
1393 config.status: creating src/include/mpich2info.h
1394 config.status: creating mpich2-doxygen
1395 config.status: creating src/include/mpichtimer.h
1396 config.status: creating src/binding/Makefile
1397 config.status: creating src/binding/cxx/Makefile
1398 config.status: creating src/binding/cxx/mpicxx.h
1399 config.status: creating src/binding/f77/Makefile
1400 config.status: creating src/binding/f77/mpif.h
1401 config.status: creating src/binding/f77/setbotf.f
1402 config.status: creating src/binding/f90/Makefile
1403 config.status: creating src/binding/f90/mpi_sizeofs.f90
1404 config.status: creating src/pkgconfig/mpich2-ch3.pc
1405 config.status: creating src/pkgconfig/Makefile
1406 config.status: creating src/env/mpicc
1407 config.status: creating src/env/mpicc.conf
1408 config.status: creating src/env/mpicc.bash
1409 config.status: creating src/env/mpicxx
1410 config.status: creating src/env/mpicxx.conf
1411 config.status: creating src/env/mpicxx.bash
1412 config.status: creating src/env/mpif77
1413 config.status: creating src/env/mpif77.conf
1414 config.status: creating src/env/mpif77.bash
1415 config.status: creating src/env/mpif90
1416 config.status: creating src/env/mpif90.conf
1417 config.status: creating src/env/mpif90.bash
1418 config.status: creating src/env/parkill
1419 config.status: creating src/env/Makefile
1420 config.status: creating src/util/createshlib
1421 config.status: creating src/mpi/Makefile
1422 config.status: creating src/mpi/attr/Makefile
1423 config.status: creating src/mpi/coll/Makefile
1424 config.status: creating src/mpi/comm/Makefile
1425 config.status: creating src/mpi/datatype/Makefile
1426 config.status: creating src/mpi/debugger/Makefile
1427 config.status: creating src/mpi/errhan/Makefile
1428 config.status: creating src/mpi/group/Makefile
1429 config.status: creating src/mpi/init/Makefile
1430 config.status: creating src/mpi/misc/Makefile
1431 config.status: creating src/mpi/pt2pt/Makefile
1432 config.status: creating src/mpi/rma/Makefile
1433 config.status: creating src/mpi/spawn/Makefile
1434 config.status: creating src/mpi/timer/Makefile
1435 config.status: creating src/mpi/topo/Makefile
1436 config.status: creating src/mpid/Makefile
1437 config.status: creating src/mpid/common/Makefile
1438 config.status: creating src/mpid/common/datatype/Makefile
1439 config.status: creating src/mpid/common/datatype/dataloop/Makefile
1440 config.status: creating src/mpid/common/locks/Makefile
1441 config.status: creating src/pm/Makefile
1442 config.status: creating src/pmi/Makefile
1443 config.status: creating src/nameserv/Makefile
1444 config.status: creating src/nameserv/file/Makefile
1445 config.status: creating src/nameserv/mpd/Makefile
1446 config.status: creating src/nameserv/pmi/Makefile
1447 config.status: creating src/nameserv/test/Makefile
1448 config.status: creating src/util/Makefile
1449 config.status: creating src/util/info/Makefile
1450 config.status: creating src/util/instrm/Makefile
1451 config.status: creating src/util/thread/Makefile
1452 config.status: creating src/util/thread/mpe_thread.h
1453 config.status: creating src/util/mem/Makefile
1454 config.status: creating src/util/msgs/Makefile
1455 config.status: creating src/util/param/Makefile
1456 config.status: creating src/util/dbg/Makefile
1457 config.status: creating src/util/dbg/getfuncstack
1458 config.status: creating src/util/osserv/Makefile
1459 config.status: creating src/include/mpi.h
1460 config.status: creating test/Makefile
1461 config.status: creating test/util/Makefile
1462 config.status: creating test/basic/Makefile
1463 config.status: creating test/commands/Makefile
1464 config.status: creating test/commands/cmdtests
1465 config.status: creating test/mpid/Makefile
1466 config.status: creating test/mpid/ch3/Makefile
1467 config.status: creating examples/Makefile
1468 config.status: creating examples/f77/Makefile
1469 config.status: creating examples/f90/Makefile
1470 config.status: creating examples/cxx/Makefile
1471 config.status: creating src/util/logging/Makefile
1472 config.status: creating src/util/logging/common/Makefile
1473 config.status: creating doc/Makefile
1474 config.status: creating doc/mansrc/Makefile
1475 config.status: creating doc/mansrc/createhtmlindex
1476 config.status: creating doc/refman/Makefile
1477 config.status: creating doc/installguide/Makefile
1478 config.status: creating doc/userguide/Makefile
1479 config.status: creating doc/logging/Makefile
1480 config.status: creating doc/design/Makefile
1481 config.status: creating doc/smpd/Makefile
1482 config.status: creating doc/windev/Makefile
1483 config.status: creating src/include/mpichconf.h
1484 config.status: src/include/mpichconf.h is unchanged
1485 config.status: executing default-1 commands
1486 config.status: executing default-2 commands
1487 config.status: executing default-3 commands
1488 config.status: executing default-4 commands
1489 copying ./src/util/thread/mpe_thread_posix.c to src/util/thread/mpe_thread.c
1490 moving mpe_thread.h to src/include
1491 config.status: executing default-5 commands
1492 config.status: executing default-6 commands
1493 config.status: executing default-7 commands
1494 config.status: executing default-8 commands
1495 config.status: executing default-9 commands
1496 Updating dependency directories .deps
1497 config.status: executing default-10 commands
1498 config.status: executing default-11 commands
1499 config.status: executing default-12 commands
1500 config.status: executing default-13 commands
1501 config.status: executing default-14 commands
1502 configure: configuring in test/mpi
1503 configure: running /bin/sh './configure' --prefix=/share/apps/mpich2-install  '--prefix=/share/apps/mpich2-install' '--with-pm=gforker' 'CPPFLAGS=-DpgiFortran' 'F77=/share/apps/pgi/linux86-64/6.0/bin/pgf77' 'F90=/share/apps/pgi/linux86-64/6.0/bin/pgf90' --cache-file=/dev/null --srcdir=.
1504 RUNNING CONFIGURE FOR MPI TESTS
1505 checking for make... make
1506 checking whether clock skew breaks make... no
1507 checking whether make supports include... yes
1508 checking whether make allows comments in actions... yes
1509 checking for virtual path format... VPATH
1510 checking whether make sets CFLAGS... no
1511 checking for gcc... gcc
1512 checking for C compiler default output file name... a.out
1513 checking whether the C compiler works... yes
1514 checking whether we are cross compiling... no
1515 checking for suffix of executables...
1516 checking for suffix of object files... o
1517 checking whether we are using the GNU C compiler... yes
1518 checking whether gcc accepts -g... yes
1519 checking for gcc option to accept ANSI C... none needed
1520 checking whether we are using the GNU Fortran 77 compiler... no
1521 checking whether /share/apps/pgi/linux86-64/6.0/bin/pgf77 accepts -g... yes
1522 checking whether we are using the GNU C++ compiler... yes
1523 checking whether c++ accepts -g... yes
1524 checking whether long double is supported... yes
1525 checking whether long long is supported... yes
1526 checking for an ANSI C-conforming const... yes
1527 checking for restrict... __restrict
1528 checking how to run the C preprocessor... gcc -E
1529 checking for unistd.h... yes
1530 checking for stdarg.h... yes
1531 checking for string.h... yes
1532 checking for stdlib.h... yes
1533 checking for memory.h... yes
1534 Configuring tests for MPICH2
1535 checking whether struct hostent contains h_addr_list... yes
1536 checking whether integer*4 is supported... yes
1537 checking whether integer*8 is supported... yes
1538 checking whether integer*16 is supported... yes
1539 checking for Fortran 77 name mangling... lower underscore
1540 checking for Fortran libraries needed for getarg... none needed
1541 checking whether Fortran has pointer declaration... yes
1542 checking that f works as the extension for Fortran 90 program... yes
1543 checking whether we are using the GNU Fortran 90 compiler... no
1544 checking whether /share/apps/pgi/linux86-64/6.0/bin/pgf90 accepts -g... yes
1545 checking for extension for Fortran 90 programs... f90
1546 checking whether the Fortran 90 compiler (/share/apps/pgi/linux86-64/6.0/bin/pgf90  ) works... yes
1547 checking whether the Fortran 90 compiler (/share/apps/pgi/linux86-64/6.0/bin/pgf90  ) is a cross-compiler... no
1548 checking whether Fortran 90 has Cray-style pointer declaration... yes
1549 checking whether <iostream> available... yes
1550 checking whether the compiler implements namespaces... yes
1551 checking whether the compiler implements the namespace std... yes
1552 checking for perl... /usr/bin/perl
1553 checking for etags... etags
1554 configure: creating ./config.status
1555 config.status: creating maint/testmerge
1556 config.status: creating runtests
1557 config.status: creating Makefile
1558 config.status: creating basic/Makefile
1559 config.status: creating attr/Makefile
1560 config.status: creating util/Makefile
1561 config.status: creating coll/Makefile
1562 config.status: creating comm/Makefile
1563 config.status: creating datatype/Makefile
1564 config.status: creating errhan/Makefile
1565 config.status: creating group/Makefile
1566 config.status: creating info/Makefile
1567 config.status: creating init/Makefile
1568 config.status: creating pt2pt/Makefile
1569 config.status: creating rma/Makefile
1570 config.status: creating spawn/Makefile
1571 config.status: creating topo/Makefile
1572 config.status: creating io/Makefile
1573 config.status: creating f77/Makefile
1574 config.status: creating f77/attr/Makefile
1575 config.status: creating f77/attr/attraints.h
1576 config.status: creating f77/pt2pt/attr1aints.h
1577 config.status: creating f77/ext/add1size.h
1578 config.status: creating f77/datatype/Makefile
1579 config.status: creating f77/datatype/typeaints.h
1580 config.status: creating f77/util/Makefile
1581 config.status: creating f77/coll/Makefile
1582 config.status: creating f77/comm/Makefile
1583 config.status: creating f77/topo/Makefile
1584 config.status: creating f77/init/Makefile
1585 config.status: creating f77/rma/addsize.h
1586 config.status: creating f77/pt2pt/Makefile
1587 config.status: creating f77/info/Makefile
1588 config.status: creating f77/spawn/Makefile
1589 config.status: creating f77/spawn/type1aint.h
1590 config.status: creating f77/rma/Makefile
1591 config.status: creating f77/ext/Makefile
1592 config.status: creating f77/ext/testlist
1593 config.status: creating f77/io/Makefile
1594 config.status: creating f77/io/iooffset.h
1595 config.status: creating f77/io/iodisp.h
1596 config.status: creating f77/io/ioaint.h
1597 config.status: creating f90/Makefile
1598 config.status: creating f90/attr/Makefile
1599 config.status: creating f90/datatype/Makefile
1600 config.status: creating f90/f90types/Makefile
1601 config.status: creating f90/util/Makefile
1602 config.status: creating f90/coll/Makefile
1603 config.status: creating f90/comm/Makefile
1604 config.status: creating f90/topo/Makefile
1605 config.status: creating f90/init/Makefile
1606 config.status: creating f90/pt2pt/Makefile
1607 config.status: creating f90/rma/Makefile
1608 config.status: creating f90/info/Makefile
1609 config.status: creating f90/spawn/Makefile
1610 config.status: creating f90/timer/Makefile
1611 config.status: creating f90/ext/Makefile
1612 config.status: creating f90/ext/testlist
1613 config.status: creating f90/io/Makefile
1614 config.status: creating f90/misc/Makefile
1615 config.status: creating cxx/Makefile
1616 config.status: creating cxx/util/Makefile
1617 config.status: creating cxx/attr/Makefile
1618 config.status: creating cxx/pt2pt/Makefile
1619 config.status: creating cxx/comm/Makefile
1620 config.status: creating cxx/coll/Makefile
1621 config.status: creating cxx/info/Makefile
1622 config.status: creating cxx/datatype/Makefile
1623 config.status: creating cxx/io/Makefile
1624 config.status: creating cxx/init/Makefile
1625 config.status: creating cxx/rma/Makefile
1626 config.status: creating cxx/spawn/Makefile
1627 config.status: creating threads/Makefile
1628 config.status: creating threads/pt2pt/Makefile
1629 config.status: creating threads/util/Makefile
1630 config.status: creating threads/comm/Makefile
1631 config.status: creating errors/Makefile
1632 config.status: creating errors/coll/Makefile
1633 config.status: creating errors/comm/Makefile
1634 config.status: creating errors/group/Makefile
1635 config.status: creating errors/pt2pt/Makefile
1636 config.status: creating errors/rma/Makefile
1637 config.status: creating errors/spawn/Makefile
1638 config.status: creating errors/topo/Makefile
1639 config.status: creating errors/io/Makefile
1640 config.status: creating errors/cxx/Makefile
1641 config.status: creating errors/cxx/errhan/Makefile
1642 config.status: creating errors/cxx/io/Makefile
1643 config.status: creating errors/f77/Makefile
1644 config.status: creating errors/f90/Makefile
1645 config.status: creating manual/Makefile
1646 config.status: creating manual/manyconnect
1647 config.status: creating perf/Makefile
1648 config.status: creating testlist
1649 config.status: creating cxx/testlist
1650 config.status: creating f77/testlist
1651 config.status: creating f90/testlist
1652 config.status: creating errors/testlist
1653 config.status: creating errors/cxx/testlist
1654 config.status: creating include/mpitestconf.h
1655 config.status: executing default-1 commands
1656 config.status: executing default-2 commands
1657 config.status: executing default-3 commands
1658 Configuration completed.