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BUILD 129
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Reference SNP(refSNP) Cluster Report: rs30764283          
refSNP ID: rs30764283
Organism:mouse (Mus musculus)
Molecule Type:Genomic
Created/Updated in build:125/128
Map to Genome Build:37.1
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:A/C
Strain:not submitted
Ancestral Allele:Not available
Clinical Association:unknown
HGVS Names
Links

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss45962558 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs30764283 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss45962558ABI|mCV23896145byFreqfwd/TA/Ccctaaactgaaaccaaggcactgtacagggactgcacgatggactctggctccctgagga07/20/0512/22/05125Genomicunknown
ss58117242ENSEMBL|NT_039343.5_9013181fwd/TA/Ccctaaactgaaaccaaggcactgtacagggactgcacgatggactctggctccctgagga06/12/0606/12/06128Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs30764283|allelePos=301|totalLen=601|taxid=10090|snpclass=1|alleles='A/C'|mol=Genomic|build=128
 GAGAGCTTAT GAACTCAGGT ATCCACTCAC TGAACCTATA ACCCTGAATT TCTACCACTG
 GCTAAGACAA TGGGTCTAAA AAGCAAAAAT GACATCACAG TCACCTGCAA AGCTCTTTAA
 TATACAGCAT CTAAGTCTGC ACTGCAGAGC TACCAAAGCA GAACTGGTGT TGGAACCCAG
 TAACCACCAC TGTAAAACAC ACTTGATTAT TGCAAACAGG CCTTGTAACA GATAAGAAAA
 TCCACGTCTG AAACTGCATG GAAACCATAA CCTAAACTGA AACCAAGGCA CTGTACAGGG
 M
 ACTGCACGAT GGACTCTGGC TCCCTGAGGA CTGTACCATC TCCACACTTT TTTGTAAATC
 AACCTTTCTT TCTTTTCTTT TCTTTTTTTT GGTCTTTTGA GACAGGGTTT CTCTGTGTAG
 CCCTGGCTGT CCTTGAACTC AGAAACCCGC CTGCCTCTGC CTCCCGAGTG CTGGGACTAA
 AGGCACATGC CACCACTGCC CGGCTGTGAG TCAACTTTCC AAGTCCTTTA GTCTGTCTTG
 CTTACAGTTG TTATGAACAG GCACAGAAGC ACATTTTTGT AACAGAAATA CACTTAGTAT

  GeneView back to top
GeneView: no link established by analysis of contig annotation
GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  rs30764283 maps exactly once on NCBI mouse chromosome 6
ChromosomeContig
accession		Contig
position		Chromosome
position		Hit
orientation		Contig
Allele		Assembly
Type		Group
label		Contig
label		Neighbor
SNP		SNP_flank
position
6NT_039353.7905087956737917plusAref_strainC57BL/6JC57BL/6Jview300
6NW_001030806.170321957550644plusAalt_assembly_1CeleraCeleraview300

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_039343.5
dbSNP Blast Analysis
GenBank HTGS Finished:
AC115003.18

  Population Diversity back to top

Sample AscertainmentGenotype Detailnew.gifAlleles
ss#PopulationIndividual
Group		Chrom.
Sample Cnt.
SourceA/A
C/C
ss45962558CRAMUS_MOUSE 8IG 2 2

SummaryAverage
Het.+/- std err:		Individual
Count		Founders
Count		Individual
Overlap		Genotype
Conflict
-1.000+/-04400

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation		PCR results confirmed
in multiple reactions		Homozygotes detected
in individual genotype data
byFreqUNKNOWNUNKNOWNUNKNOWN

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Revised: May 25, 2006 1:38 PM .