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GEO accession:
Sample GSM116964
Query DataSets for GSM116964
Status
Public on Sep 30, 2006
Title
NA12750_Nsp_COMM
Sample type
genomic
Source Name
DNA was obtained from NIGHS Human Genetic Cell Repository
Organism(s)
Homo sapiens
Characteristics
Gender: Male Cell lot number: 2
Biomaterial provider
Coriell NA12750
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA12750
Extracted molecule
genomic DNA
Label
Biotin
Description
Hapmap samples used for identifying variable copy number regions in the genome
Data processing
Genotyes reported by dynamic modeling algorithm
Submission date
Jun 29, 2006
Contact name
Fan Shen
E-mail(s)
Fan_Shen@affymetrix.com
Phone
408-731-5762
Organization name
Affymetrix, Inc
Street address
3420 Central Expressway
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Platform ID
GPL3718
Series (1)
GSE5173
Global variation of copy number in the human genome_COMM
Data table header descriptions
ID_REF
Affymetrix probe set ID
VALUE
Genotypes
DETECTION P-VALUE
Detection pValue
MedianS
Median signal
RAS1
Relative allele signal for data in the first probe group
RAS2
Relative allele signal for data in the second probe group
Data table
ID_REF
VALUE
DETECTION P-VALUE
MedianS
RAS1
RAS2
SNP_A-1780520
BB
0.007813
13.761
0.132328
0.065160
SNP_A-1780618
BB
0.007813
21.228
0.057823
0.006503
SNP_A-1780632
AB
0.062500
7.693
0.695074
0.626147
SNP_A-1780654
AA
0.007813
30.169
1.000000
1.000000
SNP_A-4192495
AA
0.312500
7.423
0.510791
0.900665
SNP_A-4192498
BB
0.000488
15.260
0.000000
0.006700
SNP_A-1780732
BB
0.015625
18.965
0.000000
0.016349
SNP_A-1780848
BB
0.039063
7.396
0.000000
0.200632
SNP_A-1780985
AB
0.062500
5.545
0.419440
0.410486
SNP_A-1781022
AA
0.007813
11.865
1.000000
1.000000
SNP_A-1781076
AB
0.007813
13.250
0.586397
0.590909
SNP_A-1781249
AB
0.023438
9.371
0.523907
0.453075
SNP_A-1781276
AA
0.007813
13.676
0.961281
0.888276
SNP_A-1781302
BB
0.007813
10.256
0.112121
0.000000
SNP_A-1781510
AA
0.007813
34.531
1.000000
1.000000
SNP_A-4192564
BB
0.007813
14.438
0.000000
0.015385
SNP_A-1781614
AA
0.007813
15.388
0.978510
0.988775
SNP_A-1781633
AA
0.007813
15.616
1.000000
1.000000
SNP_A-1781764
AB
0.007813
17.796
0.500832
0.422395
SNP_A-1781829
AA
0.007813
11.065
0.937675
0.850233
Total number of rows:
262264
Table truncated, full table size
12983 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM116964.CEL.gz
42.5 Mb
(ftp)
(http)
CEL
GSM116964.raw.txt.gz
25.6 Mb
(ftp)
(http)
TXT
Raw data provided as supplementary file
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