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BUILD 129
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Reference SNP(refSNP) Cluster Report: rs131541          
refSNP ID: rs131541
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:78/129
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:A/T
Ancestral Allele:Not available
Clinical Association:unknown
HGVS Names
Links

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss8285522 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs131541 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss139227SC|Em:AP000544_5947fwd/TA/Tacctgcgcacgcaccccgcccctgcatgccggcccctcgtcctagaagacccttcccgac06/08/0010/10/0378Genomicunknown
ss8285522SC_SNP|NT_011519.9_23766fwd/TA/Tacctgcgcacgcaccccgcccctgcatgccggcccctcgtcctagaagacccttcccgac04/17/0310/10/03114Genomicunknown
ss13346386SC_SNP|NT_011519.10_23859fwd/TA/Tacctgcgcacgcaccccgcccctgcatgccggcccctcgtcctagaagacccttcccgac10/22/0310/31/03119Genomicunknown
ss21839542SSAHASNP|WGSA-200403-chr22.chr22.NT_011519.10_23859fwd/TA/Tacctgcgcacgcaccccgcccctgcatgccggcccctcgtcctagaagacccttcccgac03/20/0403/20/04121Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs131541|allelePos=401|totalLen=801|taxid=9606|snpclass=1|alleles='A/T'|mol=Genomic|build=121
 GCGGCTGTCG TCAGCAGCCC TCGTGCCGTG CCCCTGACCC TGTCCCTCTC CTGGCCAGGG
 AGTACCACAC ACACTTGCTA CAGTTCGATG GGGAGGGCGG CTGGAAGTTC GAGAAGCTGG
 ACTCAGCGGC CCGCCTGAGT CTGACAGAGG AGAAGCAGCG GCTGGAGCAG CAGCTGGCAG
 GCATTCCCAA GATGCAGCGG CACCTCCAGG AGCTCTGCCA AATCCTGGGC GAGGCCGTGG
 CCCCAGCGCA TGTGCCGGCA CCTAGCCCGC AAGGCCCTGG TGGCCTCCAG GGTGCCTCCA
 CCTGACGCCA CCCTCCCCAG CCCCTGCCCC GCCCCCAAGC TCGAATCACA TGAAGGAGAC
 GGCAGTGCCC ACCTGCGCAC GCACCCCGCC CCTGCATGCC
 W
 GGCCCCTCGT CCTAGAAGAC CCTTCCCGAC CTCGGGAAAG TAGATGTGGA GGGTGGCGCC
 CTGCGTAACC CTCACCCTGT CCCTCCCACT CCCTGGGGGG TCTGTTCCAC AGTGACTGGG
 CCCAGTCCAG GGCAGTGAGT CCTCTACTTT GCTTCGTGGA GGAAGCTGGG GTACAAGGGG
 CCCAGTGCTG GCCAAGCAGC AGCGCAGCCG AGCCCCAGGA GCCCCTCAGG CCACAGCCCC
 TGGCACAGCA GGTGGCCTCC CTCCTCGTCA GTCTCTCAAA GACCCCACGG TCCATCTCCT
 GAGGGTGGCC AGCCAAGGCT CCCATCCCAT GCGATGCCAT AAAAGCCGCC CAGTGGTACC
 CATGGTCACA CAGAGCGCCT CACCTGCATC CTCTCCCCCA

  GeneView back to top
GeneView: no link established by analysis of contig annotation
GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  rs131541 maps exactly once on NCBI human chromosome 22
ChromosomeContig
accession		Contig
position		Chromosome
position		Hit
orientation		Contig
Allele		Assembly
Type		Group
label		Contig
label		Neighbor
SNP		SNP_flank
position
22NW_927395.1549516549516plusTalt_assembly_1CeleraCeleraview400
22NW_001838735.21788393691941minusAalt_assembly_8HuRefHuRefview400
22NT_011519.102385915251709plusAref_assemblyreferencereferenceview400

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_011519
dbSNP Blast Analysis
NCBI RefSeq NM (mRNA):
XM_001128508.1

  Population Diversity back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation		PCR results confirmed
in multiple reactions		Homozygotes detected
in individual genotype data
with2hit
DoubleHit found by:  BCM_SSAHASNP
UNKNOWNUNKNOWNUNKNOWN

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Revised: May 25, 2006 1:38 PM .