60 proteins |
L | COG1112 | Superfamily I DNA and RNA helicases and helicase subunits | Help | |
---|---|---|---|---|---|
2 from | query genome Aquifex aeolicus (Aquificales | Aquificae (class)) | ||||
aq_2057 aq_791 |
163 letters (r) 0 0 742 = ||| 1 aq_791 (163) = 6 525 324 = 23 MK0070 (698) = -6 495 265 = 25 TM0005 (650) = -8 495 255 = 24 AF1388 (648) = 5 496 248 = 24 MJ0104 (663) = -21 504 231 = 25 MTH1634 (642) = -6 501 228 = 25 PH0909 (656) = -6 500 228 = 25 PAB1561 (653) = 6 476 89 = 55 SPCC737.07c (660) = 275 387 88 = 56 VNG1501G (821) = 175 418 64 _ 255 alr1627 (753) COG2217 447 -10 63 255 YJR046w (604) 343 3 62 _ 255 AGc2215 (509) COG0747 284 218 62 _ 255 MA2001 (665) COG3590 56 192 62 _ 255 STM2408 (413) COG1914 226 54 61 _ 255 MJ1479 (432) COG0436
BLASTP 2.2.4 [Aug-26-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= aq_791 (163 letters) Database: myva 192,987 sequences; 59,019,183 total letters Score E Sequences producing significant alignments: (bits) Value aq_791 290 8e-79 MK0070 129 3e-30 TM0005 106 2e-23 AF1388 102 3e-22 MJ0104 100 2e-21 MTH1634 94 2e-19 PH0909 92 3e-19 PAB1561 92 4e-19 SPCC737.07c 39 0.004 VNG1501G 39 0.007 alr1627 29 3.9 YJR046w 29 5.0 AGc2215 28 5.9 MA2001 28 6.6 STM2408 28 6.8 MJ1479 28 8.6 # >aq_791 # Length = 163 # # Score = 290 bits (742), Expect = 8e-79 # Identities = 163/163 (100%), Positives = 163/163 (100%) # # Query: 1 MKKTKFSSYEEYRNYFKRLIDLERRAQTELHLKEIKTLSGKEREKRGRAILNLRAKFLGR 60 # MKKTKFSSYEEYRNYFKRLIDLERRAQTELHLKEIKTLSGKEREKRGRAILNLRAKFLGR # Sbjct: 1 MKKTKFSSYEEYRNYFKRLIDLERRAQTELHLKEIKTLSGKEREKRGRAILNLRAKFLGR 60 # # Query: 61 GLGGVYLVRYSRPQGLPKTEISTGDIVLVSKGKPTVKEVQGTVAEKTNYYLVVAFRDKPP 120 # GLGGVYLVRYSRPQGLPKTEISTGDIVLVSKGKPTVKEVQGTVAEKTNYYLVVAFRDKPP # Sbjct: 61 GLGGVYLVRYSRPQGLPKTEISTGDIVLVSKGKPTVKEVQGTVAEKTNYYLVVAFRDKPP 120 # # Query: 121 PYALGKDVRIDLFSNEITFKRMEEALKNFKEHPLRDFILGKKV 163 # PYALGKDVRIDLFSNEITFKRMEEALKNFKEHPLRDFILGKKV # Sbjct: 121 PYALGKDVRIDLFSNEITFKRMEEALKNFKEHPLRDFILGKKV 163 # # # >MK0070 # Length = 698 # # Score = 129 bits (324), Expect = 3e-30 # Identities = 75/158 (47%), Positives = 106/158 (66%), Gaps = 6/158 (3%) # # Query: 10 EEYRNYFKRLIDLERRAQTELHLKEIKTLSGKEREKRGRAILNLRAKFLGRGLGGVYLVR 69 # + Y F+RL+ LER A+ + +EI+ LSGKEREK+GRA+L LR GR +GG YLV+ # Sbjct: 16 DAYVKRFQRLVQLEREAEMKAMEEEIRKLSGKEREKKGRAVLGLRGTRAGREVGGYYLVK 75 # # Query: 70 YSRPQGLPKTEISTGDIVLVSKGKPTVKEVQGTVAEKTNYYLVVAFRDKPPPYALGKDVR 129 # Y R + + T+IS GD+VLVS+G P ++ GTV EKT + VAF PP +A+GK +R # Sbjct: 76 YGRSKEI-DTQISVGDLVLVSRGDPLKSDLTGTVVEKTKRSITVAFDSPPPKWAVGKGIR 134 # # Query: 130 IDLFSNEITFKRMEEALKNFKE-----HPLRDFILGKK 162 # IDL++N++TF+RM EAL+ + LR+ I+G K # Sbjct: 135 IDLYANDVTFQRMMEALERIRHAEGRLRELRNTIIGLK 172 # # # >TM0005 # Length = 650 # # Score = 106 bits (265), Expect = 2e-23 # Identities = 68/147 (46%), Positives = 96/147 (65%), Gaps = 6/147 (4%) # # Query: 18 RLIDLERRAQTELHLKEIKTLSGKEREKRGRAILNLRAKFLGRGLGGVYLVRYSRPQGLP 77 # RL++LER A+ L E+K LSG+EREK+GRA+L L KF+G L G +LVR+ R + + # Sbjct: 12 RLVELERNAEINAMLDEMKRLSGEEREKKGRAVLGLTGKFIGEEL-GYFLVRFGRRKKI- 69 # # Query: 78 KTEISTGDIVLVSKGKPTVKEVQGTVAEKTNYYLVVAFRDKPPPYALGKDVRIDLFSNEI 137 # TEI GD+VL+SKG P + GTV EK ++ VA D+ P + L K+VRIDLF+++I # Sbjct: 70 DTEIGVGDLVLISKGNPLKSDYTGTVVEKGERFITVAV-DRLPSWKL-KNVRIDLFASDI 127 # # Query: 138 TFKRMEEALKNFKEHPLR--DFILGKK 162 # TF+R E L + +F+LGK+ # Sbjct: 128 TFRRQIENLMTLSSEGKKALEFLLGKR 154 # # # >AF1388 # Length = 648 # # Score = 102 bits (255), Expect = 3e-22 # Identities = 67/145 (46%), Positives = 97/145 (66%), Gaps = 6/145 (4%) # # Query: 18 RLIDLERRAQTELHLKEIKTLSGKEREKRGRAILNLRAKFLGRGLGGVYLVRYSRPQGLP 77 # RL ++ER AQ + EI+ LSG++RE++GRA+L LR K +G L G LVRY R + + # Sbjct: 10 RLTEVERDAQISAMMDEIRRLSGEKRERKGRAVLGLRGKVVGEEL-GFKLVRYGRRKAI- 67 # # Query: 78 KTEISTGDIVLVSKGKPTVKEVQGTVAEKTNYYLVVAFRDKPPPYALGKDVRIDLFSNEI 137 # +TEIS GD VL+S+G P +++G V EK + YL V+ + P +AL +DVRIDL+++++ # Sbjct: 68 ETEISVGDEVLISRGDPLKSDLRGVVVEKGSRYLTVSL-ESVPEWAL-RDVRIDLYASDL 125 # # Query: 138 TFKRMEEALKNFKEHPLR--DFILG 160 # TFKR E L+N E+ R F LG # Sbjct: 126 TFKRWIENLENLTENGKRALKFALG 150 # # # >MJ0104 # Length = 663 # # Score = 100 bits (248), Expect = 2e-21 # Identities = 69/151 (45%), Positives = 90/151 (58%), Gaps = 5/151 (3%) # # Query: 12 YRNYFKRLIDLERRAQTELHLKEIKTLSGKEREKRGRAILNLRAKFLGRGLGGVYLVRYS 71 # Y F LI++ERR + + H EI L GK+RE GRAILNL+ KFLG L G +VR+ # Sbjct: 17 YVKKFMDLIEIERRCEMDFHKNEIIKL-GKKRENVGRAILNLKGKFLGESL-GCTIVRFG 74 # # Query: 72 RPQGLPKTEISTGDIVLVSKGKPTVKEVQGTVAEKTNYYLVVAFRDKPPPYALGKDVRID 131 # R + KTEIS GD+VLVSK P ++ V ++ VAF P + + VR+D # Sbjct: 75 RKKPF-KTEISPGDVVLVSKENPLQSDLYANVIYVGKNFIDVAFDVDVPKWVYKERVRVD 133 # # Query: 132 LFSNEITFKRMEEALKNF--KEHPLRDFILG 160 # L+ N+ITFKRM+EAL+ F K L ILG # Sbjct: 134 LYVNDITFKRMKEALREFARKRDKLAYIILG 164 # # # >MTH1634 # Length = 642 # # Score = 93.6 bits (231), Expect = 2e-19 # Identities = 58/134 (43%), Positives = 87/134 (64%), Gaps = 4/134 (2%) # # Query: 22 LERRAQTELHLKEIKTLSGKEREKRGRAILNLRAKFLGRGLGGVYLVRYSRPQGLPKTEI 81 # +ER A+ + EI+ LS ++RE+ RA+ L K GR L G +LV+Y R + T+I # Sbjct: 1 MEREAEISAMMNEIRRLSPRQRERARRAVNGLNGKITGREL-GFHLVKYGRRDPI-DTQI 58 # # Query: 82 STGDIVLVSKGKPTVKEVQGTVAEKTNYYLVVAFRDKPPPYALGKDVRIDLFSNEITFKR 141 # S GD+VL+S+G P ++ GTVA K +LVVA + P +AL K+VRIDL++N++TF+R # Sbjct: 59 SVGDLVLISRGNPLRSDLTGTVAMKGKRFLVVAL-EHVPGWAL-KNVRIDLYANDVTFQR 116 # # Query: 142 MEEALKNFKEHPLR 155 # M + LK+ + LR # Sbjct: 117 MIDNLKSPTRNVLR 130 # # # >PH0909 # Length = 656 # # Score = 92.4 bits (228), Expect = 3e-19 # Identities = 69/153 (45%), Positives = 98/153 (63%), Gaps = 6/153 (3%) # # Query: 10 EEYRNYFKRLIDLERRAQTELHLKEIKTLSGKEREKRGRAILNLRAKFLGRGLGGVYLVR 69 # + + N K L+++E+ A+ E E+K LSG ERE+ GRAILNL K G L G +LV+ # Sbjct: 4 KSFINRLKELVEIEKEAEIEAMRLEMKRLSGVERERLGRAILNLNGKIAGEEL-GYFLVK 62 # # Query: 70 YSRPQGLPKTEISTGDIVLVSKGKPTVKEVQGTVAEKTNYYLVVAFRDKPPPYALGKDVR 129 # Y R + + KTEIS GD+V++SK P ++ GTV EK ++VVA + P +AL +DVR # Sbjct: 63 YGRNREI-KTEISVGDLVVISKRDPLKSDLLGTVVEKGKRFIVVAL-ETVPEWAL-RDVR 119 # # Query: 130 IDLFSNEITFKRMEEALKNFKEHPLR--DFILG 160 # IDL++N+ITF+R E L K+ R +F LG # Sbjct: 120 IDLYANDITFRRWLENLDRVKKAGKRALEFYLG 152 # # # >PAB1561 # Length = 653 # # Score = 92.4 bits (228), Expect = 4e-19 # Identities = 65/138 (47%), Positives = 92/138 (66%), Gaps = 4/138 (2%) # # Query: 14 NYFKRLIDLERRAQTELHLKEIKTLSGKEREKRGRAILNLRAKFLGRGLGGVYLVRYSRP 73 # N K L+++ER A+ E E++ LSG ERE+ GRAILNL K +G L G +LV+Y R # Sbjct: 8 NRLKELVEIEREAEIEAMRLEMRRLSGIERERLGRAILNLNGKIIGEEL-GYFLVKYGRN 66 # # Query: 74 QGLPKTEISTGDIVLVSKGKPTVKEVQGTVAEKTNYYLVVAFRDKPPPYALGKDVRIDLF 133 # + + KTEIS GD+V++SK P ++ GTV EK ++VVA + P +AL +DVRIDL+ # Sbjct: 67 REI-KTEISVGDLVVISKRDPLKSDLLGTVVEKGKRFIVVAL-ETVPEWAL-RDVRIDLY 123 # # Query: 134 SNEITFKRMEEALKNFKE 151 # +N+ITF+R E L K+ # Sbjct: 124 ANDITFRRWLENLNTIKK 141 # # # >SPCC737.07c # Length = 660 # # Score = 38.9 bits (89), Expect = 0.004 # Identities = 33/146 (22%), Positives = 64/146 (43%), Gaps = 15/146 (10%) # # Query: 20 IDLERRAQTELHLKEIKTLSGKEREKRGRAILNLRAKFLGRGLGGVYLV------RYSRP 73 # +D ++++ + K IK +++G A++NLR + G GG ++ +S # Sbjct: 26 VDEAQKSEVDETEKSIKRFPLSVLQRKGLALINLRIGVVKTGFGGKTIIDFEKDPAFSNG 85 # # Query: 74 QGLPKTEISTGDIVLV-------SKGKP--TVKEVQGTVAEKTNYYLVVAFRDKPPPYAL 124 # + LP S GD+V + K +P T V+G V ++ VA + + + # Sbjct: 86 EELPANSFSPGDVVSIRQDFQSSKKKRPNETDISVEGVVTRVHERHISVALKSEEDIPSS 145 # # Query: 125 GKDVRIDLFSNEITFKRMEEALKNFK 150 # + + N +T++RM + FK # Sbjct: 146 VTRLSVVKLVNRVTYERMRHTMLEFK 171 # # # >VNG1501G # Length = 821 # # Score = 38.5 bits (88), Expect = 0.007 # Identities = 36/138 (26%), Positives = 58/138 (41%), Gaps = 8/138 (5%) # # Query: 11 EYRNYFKRLIDLERRAQTELH--LKEIKTLSGKEREKRGRAILNLRAKFLGRGLGGVYLV 68 # E R YF L D + +H +++ S ER RA++ L G + + # Sbjct: 286 EERAYFDELYDAIEAERGAIHDEYRKLWEQSPDERAADDRAVVGLSPAEQTELPDGRWRL 345 # # Query: 69 RYSRPQGLPKTEISTGDIVLVSKGKPTVKEVQGTVAEKTNYYLVVAFRDKPPPYALGKDV 128 # +RP G ++I GD VL S G P + E+ + V D+P # Sbjct: 346 TATRP-GSAASKIREGDRVLASDGDPVAGRAEMARVERLDADRVEVTTDEPVSLC----- 399 # # Query: 129 RIDLFSNEITFKRMEEAL 146 # R+D++ +E++ RM AL # Sbjct: 400 RLDVYPSELSVDRMLTAL 417 # # # >alr1627 # Length = 753 # # Score = 29.3 bits (64), Expect = 3.9 # Identities = 20/67 (29%), Positives = 32/67 (46%), Gaps = 3/67 (4%) # # Query: 42 EREKRGRAILNLRAKFLGRGLGGVYLVRYSRPQGLPKTEISTGDIVLVSKGKPTVKEVQG 101 # E +G+ +R K +G + L+R R +P E+ GD+VLV G+ V G # Sbjct: 217 ENRAKGQTSEAIR-KLIGLQVKTARLIRNGREVDVPIEEVEIGDVVLVRPGEKI--PVDG 273 # # Query: 102 TVAEKTN 108 # V + T+ # Sbjct: 274 EVVDGTS 280 # # # >YJR046w # Length = 604 # # Score = 28.9 bits (63), Expect = 5.0 # Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 4/54 (7%) # # Query: 41 KEREKRGRAILNLRAK----FLGRGLGGVYLVRYSRPQGLPKTEISTGDIVLVS 90 # +ERE+R A+L+ R K FL + V+ + +S +G P TE +++ S # Sbjct: 488 RERERRSAALLSQRQKRYQQFLAMKMTQVFDILFSLTRGQPYTETYLSSLIVDS 541 # # # >AGc2215 # Length = 509 # # Score = 28.5 bits (62), Expect = 5.9 # Identities = 11/29 (37%), Positives = 18/29 (61%) # # Query: 135 NEITFKRMEEALKNFKEHPLRDFILGKKV 163 # +E F E L+NF+ HP+ F+L K++ # Sbjct: 478 HETVFDAYSEKLENFRPHPINYFVLTKEL 506 # # # >MA2001 # Length = 665 # # Score = 28.5 bits (62), Expect = 6.6 # Identities = 15/40 (37%), Positives = 21/40 (52%) # # Query: 34 EIKTLSGKEREKRGRAILNLRAKFLGRGLGGVYLVRYSRP 73 # E K KE E R + +LN + +G +G VY+ RY P # Sbjct: 318 ERKLNGQKEMEPRWKRVLNAENRAIGEAIGRVYVDRYFDP 357 # # # >STM2408 # Length = 413 # # Score = 28.5 bits (62), Expect = 6.8 # Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 2/83 (2%) # # Query: 55 AKFLGRGLGGVYLVRYSRPQGLPKTEISTGDIVLVSK--GKPTVKEVQGTVAEKTNYYLV 112 # A+F+G +G ++ S QG T I+T I+++ + KP K + G + Y+V # Sbjct: 111 AEFIGAAIGFKLILGVSLLQGAVLTGIATFLILMLQRRGQKPLEKVIGGLLLFVAAAYIV 170 # # Query: 113 VAFRDKPPPYALGKDVRIDLFSN 135 # F +P LGK + I N # Sbjct: 171 ELFFSQPDMAQLGKGMVIPALPN 193 # # # >MJ1479 # Length = 432 # # Score = 28.1 bits (61), Expect = 8.6 # Identities = 21/69 (30%), Positives = 32/69 (45%), Gaps = 15/69 (21%) # # Query: 96 VKEVQGTVAEKTN--YYLVVAFRDKPPPYALGKDVRIDLFSNEITFKRMEEALKNFKEHP 153 # +K++ G +A K N +Y+ V F D Y G + + K E LK F EH # Sbjct: 322 LKDLDGVIANKANGAFYMSVVFEDN---YLNGNN----------SIKIENEKLKEFIEHQ 368 # # Query: 154 LRDFILGKK 162 # ++D + KK # Sbjct: 369 IKDASIDKK 377 # # Database: myva Posted date: Sep 16, 2002 2:25 PM Number of letters in database: 59,019,183 Number of sequences in database: 192,987 Lambda K H 0.319 0.139 0.388 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 18,687,728 Number of Sequences: 192987 Number of extensions: 756240 Number of successful extensions: 2319 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 21 Number of HSP's that attempted gapping in prelim test: 2292 Number of HSP's gapped (non-prelim): 36 length of query: 163 length of database: 59,019,183 effective HSP length: 101 effective length of query: 62 effective length of database: 39,527,496 effective search space: 2450704752 effective search space used: 2450704752 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 61 (28.1 bits) S2: 61 (28.1 bits)