proteins
| 60 proteins |
L | COG1112 | Superfamily I DNA and RNA helicases and helicase subunits | Help | |
|---|---|---|---|---|---|
| 2 from | query genome Aquifex aeolicus (Aquificales | Aquificae (class)) | ||||
| aq_2057 aq_791 | ||||
163 letters (r) 0
0 742 = ||| 1 aq_791 (163) = 6
BLASTP 2.2.4 [Aug-26-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= aq_791
(163 letters)
Database: myva
192,987 sequences; 59,019,183 total letters
Score E
Sequences producing significant alignments: (bits) Value
aq_791 290 8e-79
MK0070 129 3e-30
TM0005 106 2e-23
AF1388 102 3e-22
MJ0104 100 2e-21
MTH1634 94 2e-19
PH0909 92 3e-19
PAB1561 92 4e-19
SPCC737.07c 39 0.004
VNG1501G 39 0.007
alr1627 29 3.9
YJR046w 29 5.0
AGc2215 28 5.9
MA2001 28 6.6
STM2408 28 6.8
MJ1479 28 8.6
# >aq_791
# Length = 163
#
# Score = 290 bits (742), Expect = 8e-79
# Identities = 163/163 (100%), Positives = 163/163 (100%)
#
# Query: 1 MKKTKFSSYEEYRNYFKRLIDLERRAQTELHLKEIKTLSGKEREKRGRAILNLRAKFLGR 60
# MKKTKFSSYEEYRNYFKRLIDLERRAQTELHLKEIKTLSGKEREKRGRAILNLRAKFLGR
# Sbjct: 1 MKKTKFSSYEEYRNYFKRLIDLERRAQTELHLKEIKTLSGKEREKRGRAILNLRAKFLGR 60
#
# Query: 61 GLGGVYLVRYSRPQGLPKTEISTGDIVLVSKGKPTVKEVQGTVAEKTNYYLVVAFRDKPP 120
# GLGGVYLVRYSRPQGLPKTEISTGDIVLVSKGKPTVKEVQGTVAEKTNYYLVVAFRDKPP
# Sbjct: 61 GLGGVYLVRYSRPQGLPKTEISTGDIVLVSKGKPTVKEVQGTVAEKTNYYLVVAFRDKPP 120
#
# Query: 121 PYALGKDVRIDLFSNEITFKRMEEALKNFKEHPLRDFILGKKV 163
# PYALGKDVRIDLFSNEITFKRMEEALKNFKEHPLRDFILGKKV
# Sbjct: 121 PYALGKDVRIDLFSNEITFKRMEEALKNFKEHPLRDFILGKKV 163
#
#
# >MK0070
# Length = 698
#
# Score = 129 bits (324), Expect = 3e-30
# Identities = 75/158 (47%), Positives = 106/158 (66%), Gaps = 6/158 (3%)
#
# Query: 10 EEYRNYFKRLIDLERRAQTELHLKEIKTLSGKEREKRGRAILNLRAKFLGRGLGGVYLVR 69
# + Y F+RL+ LER A+ + +EI+ LSGKEREK+GRA+L LR GR +GG YLV+
# Sbjct: 16 DAYVKRFQRLVQLEREAEMKAMEEEIRKLSGKEREKKGRAVLGLRGTRAGREVGGYYLVK 75
#
# Query: 70 YSRPQGLPKTEISTGDIVLVSKGKPTVKEVQGTVAEKTNYYLVVAFRDKPPPYALGKDVR 129
# Y R + + T+IS GD+VLVS+G P ++ GTV EKT + VAF PP +A+GK +R
# Sbjct: 76 YGRSKEI-DTQISVGDLVLVSRGDPLKSDLTGTVVEKTKRSITVAFDSPPPKWAVGKGIR 134
#
# Query: 130 IDLFSNEITFKRMEEALKNFKE-----HPLRDFILGKK 162
# IDL++N++TF+RM EAL+ + LR+ I+G K
# Sbjct: 135 IDLYANDVTFQRMMEALERIRHAEGRLRELRNTIIGLK 172
#
#
# >TM0005
# Length = 650
#
# Score = 106 bits (265), Expect = 2e-23
# Identities = 68/147 (46%), Positives = 96/147 (65%), Gaps = 6/147 (4%)
#
# Query: 18 RLIDLERRAQTELHLKEIKTLSGKEREKRGRAILNLRAKFLGRGLGGVYLVRYSRPQGLP 77
# RL++LER A+ L E+K LSG+EREK+GRA+L L KF+G L G +LVR+ R + +
# Sbjct: 12 RLVELERNAEINAMLDEMKRLSGEEREKKGRAVLGLTGKFIGEEL-GYFLVRFGRRKKI- 69
#
# Query: 78 KTEISTGDIVLVSKGKPTVKEVQGTVAEKTNYYLVVAFRDKPPPYALGKDVRIDLFSNEI 137
# TEI GD+VL+SKG P + GTV EK ++ VA D+ P + L K+VRIDLF+++I
# Sbjct: 70 DTEIGVGDLVLISKGNPLKSDYTGTVVEKGERFITVAV-DRLPSWKL-KNVRIDLFASDI 127
#
# Query: 138 TFKRMEEALKNFKEHPLR--DFILGKK 162
# TF+R E L + +F+LGK+
# Sbjct: 128 TFRRQIENLMTLSSEGKKALEFLLGKR 154
#
#
# >AF1388
# Length = 648
#
# Score = 102 bits (255), Expect = 3e-22
# Identities = 67/145 (46%), Positives = 97/145 (66%), Gaps = 6/145 (4%)
#
# Query: 18 RLIDLERRAQTELHLKEIKTLSGKEREKRGRAILNLRAKFLGRGLGGVYLVRYSRPQGLP 77
# RL ++ER AQ + EI+ LSG++RE++GRA+L LR K +G L G LVRY R + +
# Sbjct: 10 RLTEVERDAQISAMMDEIRRLSGEKRERKGRAVLGLRGKVVGEEL-GFKLVRYGRRKAI- 67
#
# Query: 78 KTEISTGDIVLVSKGKPTVKEVQGTVAEKTNYYLVVAFRDKPPPYALGKDVRIDLFSNEI 137
# +TEIS GD VL+S+G P +++G V EK + YL V+ + P +AL +DVRIDL+++++
# Sbjct: 68 ETEISVGDEVLISRGDPLKSDLRGVVVEKGSRYLTVSL-ESVPEWAL-RDVRIDLYASDL 125
#
# Query: 138 TFKRMEEALKNFKEHPLR--DFILG 160
# TFKR E L+N E+ R F LG
# Sbjct: 126 TFKRWIENLENLTENGKRALKFALG 150
#
#
# >MJ0104
# Length = 663
#
# Score = 100 bits (248), Expect = 2e-21
# Identities = 69/151 (45%), Positives = 90/151 (58%), Gaps = 5/151 (3%)
#
# Query: 12 YRNYFKRLIDLERRAQTELHLKEIKTLSGKEREKRGRAILNLRAKFLGRGLGGVYLVRYS 71
# Y F LI++ERR + + H EI L GK+RE GRAILNL+ KFLG L G +VR+
# Sbjct: 17 YVKKFMDLIEIERRCEMDFHKNEIIKL-GKKRENVGRAILNLKGKFLGESL-GCTIVRFG 74
#
# Query: 72 RPQGLPKTEISTGDIVLVSKGKPTVKEVQGTVAEKTNYYLVVAFRDKPPPYALGKDVRID 131
# R + KTEIS GD+VLVSK P ++ V ++ VAF P + + VR+D
# Sbjct: 75 RKKPF-KTEISPGDVVLVSKENPLQSDLYANVIYVGKNFIDVAFDVDVPKWVYKERVRVD 133
#
# Query: 132 LFSNEITFKRMEEALKNF--KEHPLRDFILG 160
# L+ N+ITFKRM+EAL+ F K L ILG
# Sbjct: 134 LYVNDITFKRMKEALREFARKRDKLAYIILG 164
#
#
# >MTH1634
# Length = 642
#
# Score = 93.6 bits (231), Expect = 2e-19
# Identities = 58/134 (43%), Positives = 87/134 (64%), Gaps = 4/134 (2%)
#
# Query: 22 LERRAQTELHLKEIKTLSGKEREKRGRAILNLRAKFLGRGLGGVYLVRYSRPQGLPKTEI 81
# +ER A+ + EI+ LS ++RE+ RA+ L K GR L G +LV+Y R + T+I
# Sbjct: 1 MEREAEISAMMNEIRRLSPRQRERARRAVNGLNGKITGREL-GFHLVKYGRRDPI-DTQI 58
#
# Query: 82 STGDIVLVSKGKPTVKEVQGTVAEKTNYYLVVAFRDKPPPYALGKDVRIDLFSNEITFKR 141
# S GD+VL+S+G P ++ GTVA K +LVVA + P +AL K+VRIDL++N++TF+R
# Sbjct: 59 SVGDLVLISRGNPLRSDLTGTVAMKGKRFLVVAL-EHVPGWAL-KNVRIDLYANDVTFQR 116
#
# Query: 142 MEEALKNFKEHPLR 155
# M + LK+ + LR
# Sbjct: 117 MIDNLKSPTRNVLR 130
#
#
# >PH0909
# Length = 656
#
# Score = 92.4 bits (228), Expect = 3e-19
# Identities = 69/153 (45%), Positives = 98/153 (63%), Gaps = 6/153 (3%)
#
# Query: 10 EEYRNYFKRLIDLERRAQTELHLKEIKTLSGKEREKRGRAILNLRAKFLGRGLGGVYLVR 69
# + + N K L+++E+ A+ E E+K LSG ERE+ GRAILNL K G L G +LV+
# Sbjct: 4 KSFINRLKELVEIEKEAEIEAMRLEMKRLSGVERERLGRAILNLNGKIAGEEL-GYFLVK 62
#
# Query: 70 YSRPQGLPKTEISTGDIVLVSKGKPTVKEVQGTVAEKTNYYLVVAFRDKPPPYALGKDVR 129
# Y R + + KTEIS GD+V++SK P ++ GTV EK ++VVA + P +AL +DVR
# Sbjct: 63 YGRNREI-KTEISVGDLVVISKRDPLKSDLLGTVVEKGKRFIVVAL-ETVPEWAL-RDVR 119
#
# Query: 130 IDLFSNEITFKRMEEALKNFKEHPLR--DFILG 160
# IDL++N+ITF+R E L K+ R +F LG
# Sbjct: 120 IDLYANDITFRRWLENLDRVKKAGKRALEFYLG 152
#
#
# >PAB1561
# Length = 653
#
# Score = 92.4 bits (228), Expect = 4e-19
# Identities = 65/138 (47%), Positives = 92/138 (66%), Gaps = 4/138 (2%)
#
# Query: 14 NYFKRLIDLERRAQTELHLKEIKTLSGKEREKRGRAILNLRAKFLGRGLGGVYLVRYSRP 73
# N K L+++ER A+ E E++ LSG ERE+ GRAILNL K +G L G +LV+Y R
# Sbjct: 8 NRLKELVEIEREAEIEAMRLEMRRLSGIERERLGRAILNLNGKIIGEEL-GYFLVKYGRN 66
#
# Query: 74 QGLPKTEISTGDIVLVSKGKPTVKEVQGTVAEKTNYYLVVAFRDKPPPYALGKDVRIDLF 133
# + + KTEIS GD+V++SK P ++ GTV EK ++VVA + P +AL +DVRIDL+
# Sbjct: 67 REI-KTEISVGDLVVISKRDPLKSDLLGTVVEKGKRFIVVAL-ETVPEWAL-RDVRIDLY 123
#
# Query: 134 SNEITFKRMEEALKNFKE 151
# +N+ITF+R E L K+
# Sbjct: 124 ANDITFRRWLENLNTIKK 141
#
#
# >SPCC737.07c
# Length = 660
#
# Score = 38.9 bits (89), Expect = 0.004
# Identities = 33/146 (22%), Positives = 64/146 (43%), Gaps = 15/146 (10%)
#
# Query: 20 IDLERRAQTELHLKEIKTLSGKEREKRGRAILNLRAKFLGRGLGGVYLV------RYSRP 73
# +D ++++ + K IK +++G A++NLR + G GG ++ +S
# Sbjct: 26 VDEAQKSEVDETEKSIKRFPLSVLQRKGLALINLRIGVVKTGFGGKTIIDFEKDPAFSNG 85
#
# Query: 74 QGLPKTEISTGDIVLV-------SKGKP--TVKEVQGTVAEKTNYYLVVAFRDKPPPYAL 124
# + LP S GD+V + K +P T V+G V ++ VA + + +
# Sbjct: 86 EELPANSFSPGDVVSIRQDFQSSKKKRPNETDISVEGVVTRVHERHISVALKSEEDIPSS 145
#
# Query: 125 GKDVRIDLFSNEITFKRMEEALKNFK 150
# + + N +T++RM + FK
# Sbjct: 146 VTRLSVVKLVNRVTYERMRHTMLEFK 171
#
#
# >VNG1501G
# Length = 821
#
# Score = 38.5 bits (88), Expect = 0.007
# Identities = 36/138 (26%), Positives = 58/138 (41%), Gaps = 8/138 (5%)
#
# Query: 11 EYRNYFKRLIDLERRAQTELH--LKEIKTLSGKEREKRGRAILNLRAKFLGRGLGGVYLV 68
# E R YF L D + +H +++ S ER RA++ L G + +
# Sbjct: 286 EERAYFDELYDAIEAERGAIHDEYRKLWEQSPDERAADDRAVVGLSPAEQTELPDGRWRL 345
#
# Query: 69 RYSRPQGLPKTEISTGDIVLVSKGKPTVKEVQGTVAEKTNYYLVVAFRDKPPPYALGKDV 128
# +RP G ++I GD VL S G P + E+ + V D+P
# Sbjct: 346 TATRP-GSAASKIREGDRVLASDGDPVAGRAEMARVERLDADRVEVTTDEPVSLC----- 399
#
# Query: 129 RIDLFSNEITFKRMEEAL 146
# R+D++ +E++ RM AL
# Sbjct: 400 RLDVYPSELSVDRMLTAL 417
#
#
# >alr1627
# Length = 753
#
# Score = 29.3 bits (64), Expect = 3.9
# Identities = 20/67 (29%), Positives = 32/67 (46%), Gaps = 3/67 (4%)
#
# Query: 42 EREKRGRAILNLRAKFLGRGLGGVYLVRYSRPQGLPKTEISTGDIVLVSKGKPTVKEVQG 101
# E +G+ +R K +G + L+R R +P E+ GD+VLV G+ V G
# Sbjct: 217 ENRAKGQTSEAIR-KLIGLQVKTARLIRNGREVDVPIEEVEIGDVVLVRPGEKI--PVDG 273
#
# Query: 102 TVAEKTN 108
# V + T+
# Sbjct: 274 EVVDGTS 280
#
#
# >YJR046w
# Length = 604
#
# Score = 28.9 bits (63), Expect = 5.0
# Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
#
# Query: 41 KEREKRGRAILNLRAK----FLGRGLGGVYLVRYSRPQGLPKTEISTGDIVLVS 90
# +ERE+R A+L+ R K FL + V+ + +S +G P TE +++ S
# Sbjct: 488 RERERRSAALLSQRQKRYQQFLAMKMTQVFDILFSLTRGQPYTETYLSSLIVDS 541
#
#
# >AGc2215
# Length = 509
#
# Score = 28.5 bits (62), Expect = 5.9
# Identities = 11/29 (37%), Positives = 18/29 (61%)
#
# Query: 135 NEITFKRMEEALKNFKEHPLRDFILGKKV 163
# +E F E L+NF+ HP+ F+L K++
# Sbjct: 478 HETVFDAYSEKLENFRPHPINYFVLTKEL 506
#
#
# >MA2001
# Length = 665
#
# Score = 28.5 bits (62), Expect = 6.6
# Identities = 15/40 (37%), Positives = 21/40 (52%)
#
# Query: 34 EIKTLSGKEREKRGRAILNLRAKFLGRGLGGVYLVRYSRP 73
# E K KE E R + +LN + +G +G VY+ RY P
# Sbjct: 318 ERKLNGQKEMEPRWKRVLNAENRAIGEAIGRVYVDRYFDP 357
#
#
# >STM2408
# Length = 413
#
# Score = 28.5 bits (62), Expect = 6.8
# Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
#
# Query: 55 AKFLGRGLGGVYLVRYSRPQGLPKTEISTGDIVLVSK--GKPTVKEVQGTVAEKTNYYLV 112
# A+F+G +G ++ S QG T I+T I+++ + KP K + G + Y+V
# Sbjct: 111 AEFIGAAIGFKLILGVSLLQGAVLTGIATFLILMLQRRGQKPLEKVIGGLLLFVAAAYIV 170
#
# Query: 113 VAFRDKPPPYALGKDVRIDLFSN 135
# F +P LGK + I N
# Sbjct: 171 ELFFSQPDMAQLGKGMVIPALPN 193
#
#
# >MJ1479
# Length = 432
#
# Score = 28.1 bits (61), Expect = 8.6
# Identities = 21/69 (30%), Positives = 32/69 (45%), Gaps = 15/69 (21%)
#
# Query: 96 VKEVQGTVAEKTN--YYLVVAFRDKPPPYALGKDVRIDLFSNEITFKRMEEALKNFKEHP 153
# +K++ G +A K N +Y+ V F D Y G + + K E LK F EH
# Sbjct: 322 LKDLDGVIANKANGAFYMSVVFEDN---YLNGNN----------SIKIENEKLKEFIEHQ 368
#
# Query: 154 LRDFILGKK 162
# ++D + KK
# Sbjct: 369 IKDASIDKK 377
#
#
Database: myva
Posted date: Sep 16, 2002 2:25 PM
Number of letters in database: 59,019,183
Number of sequences in database: 192,987
Lambda K H
0.319 0.139 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,687,728
Number of Sequences: 192987
Number of extensions: 756240
Number of successful extensions: 2319
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 2292
Number of HSP's gapped (non-prelim): 36
length of query: 163
length of database: 59,019,183
effective HSP length: 101
effective length of query: 62
effective length of database: 39,527,496
effective search space: 2450704752
effective search space used: 2450704752
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
S2: 61 (28.1 bits)