BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= STr1221
(232 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|55821228|ref|YP_139670.1| DNA replication protein dnaD [... 441 e-122
gi|22537362|ref|NP_688213.1| DNA replication protein DnaD, ... 207 3e-52
gi|25011326|ref|NP_735721.1| hypothetical protein gbs1277 [... 207 4e-52
gi|125718233|ref|YP_001035366.1| hypothetical protein SSA_1... 207 5e-52
gi|76787864|ref|YP_329904.1| DNA replication protein DnaD, ... 205 1e-51
gi|50914101|ref|YP_060073.1| DNA replication protein [Strep... 204 4e-51
gi|19745990|ref|NP_607126.1| hypothetical protein spyM18_09... 204 5e-51
gi|15674948|ref|NP_269122.1| hypothetical protein SPy_0928 ... 204 5e-51
gi|94990297|ref|YP_598397.1| DNA replication protein dnaD [... 202 1e-50
gi|157074559|gb|ABV09242.1| DNA replication protein DnaD [S... 202 2e-50
gi|1813342|dbj|BAA11244.1| ORF2 [Streptococcus mutans] 202 2e-50
gi|24379862|ref|NP_721817.1| conserved hypothetical protein... 201 4e-50
gi|15903476|ref|NP_359026.1| hypothetical protein spr1433 [... 195 1e-48
gi|149022045|ref|ZP_01836007.1| triosephosphate isomerase [... 195 2e-48
gi|148984929|ref|ZP_01818182.1| triosephosphate isomerase [... 194 3e-48
gi|148988629|ref|ZP_01820062.1| triosephosphate isomerase [... 194 5e-48
gi|148997357|ref|ZP_01824962.1| homoserine O-succinyltransf... 193 6e-48
gi|149012691|ref|ZP_01833667.1| homoserine O-succinyltransf... 193 9e-48
gi|15901417|ref|NP_346021.1| hypothetical protein SP_1575 [... 192 1e-47
gi|146318959|ref|YP_001198671.1| Putative primosome compone... 191 3e-47
gi|81096589|ref|ZP_00874928.1| DnaD and phage-associated re... 189 8e-47
gi|116511911|ref|YP_809127.1| Putative primosome component ... 147 3e-34
gi|125624308|ref|YP_001032791.1| DNA replication protein dn... 147 4e-34
gi|15673052|ref|NP_267226.1| DnaD [Lactococcus lactis subsp... 146 1e-33
gi|29375730|ref|NP_814884.1| DNA replication protein DnaD, ... 69 2e-10
gi|56807704|ref|ZP_00365579.1| COG3935: Putative primosome ... 64 6e-09
gi|28378422|ref|NP_785314.1| DNA replication protein DnaD [... 62 2e-08
gi|15614260|ref|NP_242563.1| initiation of chromosome repli... 59 3e-07
gi|32469450|ref|NP_862858.1| gp19 [Streptococcus mitis phag... 58 4e-07
gi|116491116|ref|YP_810660.1| Putative primosome component ... 58 5e-07
gi|118586915|ref|ZP_01544348.1| initiation of chromosome re... 57 6e-07
gi|16271784|ref|NP_438121.1| hypothetical protein [Temperat... 57 6e-07
gi|2385450|dbj|BAA22163.1| ORF1 [Streptococcus pyogenes] 57 6e-07
gi|71911022|ref|YP_282572.1| DNA replication protein [Strep... 56 2e-06
gi|116494968|ref|YP_806702.1| Putative primosome component ... 56 2e-06
gi|81428526|ref|YP_395526.1| DNA replication protein DnaD (... 55 2e-06
gi|116333500|ref|YP_795027.1| Putative primosome component ... 55 4e-06
gi|139473496|ref|YP_001128212.1| hypothetical protein SpyM5... 54 5e-06
gi|90961667|ref|YP_535583.1| DNA replication protein dnaD [... 54 7e-06
gi|19745761|ref|NP_606897.1| hypothetical protein spyM18_07... 54 8e-06
gi|15674969|ref|NP_269143.1| hypothetical protein SPy_0953 ... 54 9e-06
gi|116492695|ref|YP_804430.1| Putative primosome component ... 54 1e-05
gi|116873330|ref|YP_850111.1| DNA replication protein [List... 54 1e-05
>gi|55821228|ref|YP_139670.1| DNA replication protein dnaD [Streptococcus thermophilus LMG 18311]
gi|55823140|ref|YP_141581.1| DNA replication protein dnaD [Streptococcus thermophilus CNRZ1066]
gi|116627955|ref|YP_820574.1| Putative primosome component or related protein [Streptococcus
thermophilus LMD-9]
gi|55737213|gb|AAV60855.1| DNA replication protein dnaD [Streptococcus thermophilus LMG 18311]
gi|55739125|gb|AAV62766.1| DNA replication protein dnaD [Streptococcus thermophilus CNRZ1066]
gi|116101232|gb|ABJ66378.1| Putative primosome component or related protein [Streptococcus
thermophilus LMD-9]
Length = 232
Score = 441 bits (1134), Expect = e-122, Method: Composition-based stats.
Identities = 232/232 (100%), Positives = 232/232 (100%)
Query: 1 MSFFEQYRTGNLVLPNALFFHFKDIFPSADDFLVWQFLYLQTTTQIGEVASSQIAQATGK 60
MSFFEQYRTGNLVLPNALFFHFKDIFPSADDFLVWQFLYLQTTTQIGEVASSQIAQATGK
Sbjct: 1 MSFFEQYRTGNLVLPNALFFHFKDIFPSADDFLVWQFLYLQTTTQIGEVASSQIAQATGK 60
Query: 61 TPTEVNKSITTLTEAGLLDFTTVKVNNEIKMVVDASPALAVLDKLVSSENSTTGPVAGQP 120
TPTEVNKSITTLTEAGLLDFTTVKVNNEIKMVVDASPALAVLDKLVSSENSTTGPVAGQP
Sbjct: 61 TPTEVNKSITTLTEAGLLDFTTVKVNNEIKMVVDASPALAVLDKLVSSENSTTGPVAGQP 120
Query: 121 TNTQLIKQLTDELEQALGILNPMVIEDLNKEIQEEHTDPELIREALKEAVFNRKTNWNYI 180
TNTQLIKQLTDELEQALGILNPMVIEDLNKEIQEEHTDPELIREALKEAVFNRKTNWNYI
Sbjct: 121 TNTQLIKQLTDELEQALGILNPMVIEDLNKEIQEEHTDPELIREALKEAVFNRKTNWNYI 180
Query: 181 KGVLRNWKLSGITTKIQVEERRLEHQGKKQHHQVSDEFKTGMDAARQLWGGQ 232
KGVLRNWKLSGITTKIQVEERRLEHQGKKQHHQVSDEFKTGMDAARQLWGGQ
Sbjct: 181 KGVLRNWKLSGITTKIQVEERRLEHQGKKQHHQVSDEFKTGMDAARQLWGGQ 232
>gi|22537362|ref|NP_688213.1| DNA replication protein DnaD, putative [Streptococcus agalactiae
2603V/R]
gi|77411712|ref|ZP_00788050.1| DNA replication protein DnaD, putative [Streptococcus agalactiae
CJB111]
gi|77412848|ref|ZP_00789053.1| putative DNA replication protein DnaD [Streptococcus agalactiae
515]
gi|22534235|gb|AAN00086.1|AE014247_1 DNA replication protein DnaD, putative [Streptococcus agalactiae
2603V/R]
gi|77161144|gb|EAO72250.1| putative DNA replication protein DnaD [Streptococcus agalactiae
515]
gi|77162220|gb|EAO73193.1| DNA replication protein DnaD, putative [Streptococcus agalactiae
CJB111]
Length = 226
Score = 207 bits (528), Expect = 3e-52, Method: Composition-based stats.
Identities = 104/225 (46%), Positives = 155/225 (68%), Gaps = 4/225 (1%)
Query: 1 MSFFEQYRTGNLVLPNALFFHFKDIFPSADDFLVWQFLYLQTTTQIGEVASSQIAQATGK 60
M++ EQY++G L LP+ALFFHFK IF +ADDFLVWQF YLQ TT + ++ S+IA + K
Sbjct: 1 MTYLEQYQSGQLTLPSALFFHFKSIFKTADDFLVWQFFYLQNTTNLSDLTPSRIATSLDK 60
Query: 61 TPTEVNKSITTLTEAGLLDFTTVKVNNEIKMVVDASPALAVLDKLVSSENSTTGPVAGQP 120
T ++N+SI+ LT GLLD T+++N+EI+++ D SP A LDKL +N + +
Sbjct: 61 TVADINRSISNLTSQGLLDVKTIELNHEIEIIFDTSPVFAKLDKLFEEDNQVI--IDNKT 118
Query: 121 TNTQLIKQLTDELEQALG-ILNPMVIEDLNKEIQEEHTDPELIREALKEAVFNRKTNWNY 179
+++ +K L + E+ LG +L+P +EDL K +QE+ TDP+++R AL+EAVFN KT+WNY
Sbjct: 119 SDSNRLKDLVGDFERELGRLLSPFELEDLQKTLQEDQTDPDIVRAALREAVFNGKTSWNY 178
Query: 180 IKGVLRNWKLSGITTKIQVEERRLEHQGKKQHH-QVSDEFKTGMD 223
I +LRNW+ G+TT Q+EER+ + + +SD+FK M+
Sbjct: 179 INAILRNWRREGLTTLRQIEERKQAREDNQMKDLAISDDFKNAMN 223
>gi|25011326|ref|NP_735721.1| hypothetical protein gbs1277 [Streptococcus agalactiae NEM316]
gi|76798351|ref|ZP_00780595.1| DNA replication protein DnaD [Streptococcus agalactiae 18RS21]
gi|77407841|ref|ZP_00784594.1| DNA replication protein DnaD, putative [Streptococcus agalactiae
COH1]
gi|24412864|emb|CAD46936.1| Unknown [Streptococcus agalactiae NEM316]
gi|76586302|gb|EAO62816.1| DNA replication protein DnaD [Streptococcus agalactiae 18RS21]
gi|77173588|gb|EAO76704.1| DNA replication protein DnaD, putative [Streptococcus agalactiae
COH1]
Length = 226
Score = 207 bits (527), Expect = 4e-52, Method: Composition-based stats.
Identities = 104/225 (46%), Positives = 154/225 (68%), Gaps = 4/225 (1%)
Query: 1 MSFFEQYRTGNLVLPNALFFHFKDIFPSADDFLVWQFLYLQTTTQIGEVASSQIAQATGK 60
M++ EQY++G L LP+ALFFHFK IF +ADDFLVWQF YLQ TT + ++ S+IA + K
Sbjct: 1 MTYLEQYQSGQLTLPSALFFHFKSIFKTADDFLVWQFFYLQNTTNLSDLTPSRIATSLDK 60
Query: 61 TPTEVNKSITTLTEAGLLDFTTVKVNNEIKMVVDASPALAVLDKLVSSENSTTGPVAGQP 120
T ++N+SI+ LT GLLD T+++N+EI+++ D SP A LDKL +N + +
Sbjct: 61 TVADINRSISNLTSQGLLDVKTIELNHEIEIIFDTSPVFAKLDKLFEEDNQVI--IDNKT 118
Query: 121 TNTQLIKQLTDELEQALG-ILNPMVIEDLNKEIQEEHTDPELIREALKEAVFNRKTNWNY 179
++ +K L + E+ LG +L+P +EDL K +QE+ TDP+++R AL+EAVFN KT+WNY
Sbjct: 119 ADSNRLKDLVGDFERELGRLLSPFELEDLQKTLQEDQTDPDIVRAALREAVFNGKTSWNY 178
Query: 180 IKGVLRNWKLSGITTKIQVEERRLEHQGKKQHH-QVSDEFKTGMD 223
I +LRNW+ G+TT Q+EER+ + + +SD+FK M+
Sbjct: 179 INAILRNWRREGLTTLRQIEERKQAREDNQMKDLAISDDFKNAMN 223
>gi|125718233|ref|YP_001035366.1| hypothetical protein SSA_1419 [Streptococcus sanguinis SK36]
gi|125498150|gb|ABN44816.1| Conserved hypothetical protein [Streptococcus sanguinis SK36]
Length = 226
Score = 207 bits (526), Expect = 5e-52, Method: Composition-based stats.
Identities = 111/225 (49%), Positives = 159/225 (70%), Gaps = 5/225 (2%)
Query: 1 MSFFEQYRTGNLVLPNALFFHFKDIFPSADDFLVWQFLYLQTTTQIGEVASSQIAQATGK 60
M++ +++GNLV+P+AL HFKDIF S+DDFLVWQF YLQ TT + E+A SQIA+ GK
Sbjct: 1 MTYLSAFKSGNLVIPSALLLHFKDIFDSSDDFLVWQFFYLQNTTSLEELAPSQIAEHIGK 60
Query: 61 TPTEVNKSITTLTEAGLLDFTTVKVNNEIKMVVDASPALAVLDKLVSSENSTTGPVAGQP 120
T +EVN+S++ LTE GLL + T+++N E +++ DASPAL LD+L++++ S VA P
Sbjct: 61 TLSEVNRSMSHLTEKGLLQYKTIELNGETEVIFDASPALEKLDELLAAK-SGHQTVAKAP 119
Query: 121 TNTQLIKQLTDELEQALG-ILNPMVIEDLNKEIQEEHTDPELIREALKEAVFNRKTNWNY 179
N ++K L + +Q LG +L P IEDL K +Q++ T+P+L++ AL+EAVFN K NW Y
Sbjct: 120 QN--VLKDLVETFQQELGRLLTPFEIEDLTKTVQDDKTNPDLVKAALREAVFNGKANWKY 177
Query: 180 IKGVLRNWKLSGITTKIQVEERRLEHQGKK-QHHQVSDEFKTGMD 223
I+ +LRNW+ GITT QVE +R E + Q+ VSD+F M+
Sbjct: 178 IQAILRNWRKEGITTLAQVEAKREEREAANPQNVTVSDDFLNAMN 222
>gi|76787864|ref|YP_329904.1| DNA replication protein DnaD, putative [Streptococcus agalactiae
A909]
gi|77405399|ref|ZP_00782493.1| DNA replication protein DnaD, putative [Streptococcus agalactiae
H36B]
gi|76562921|gb|ABA45505.1| DNA replication protein DnaD, putative [Streptococcus agalactiae
A909]
gi|77175981|gb|EAO78756.1| DNA replication protein DnaD, putative [Streptococcus agalactiae
H36B]
Length = 226
Score = 205 bits (522), Expect = 1e-51, Method: Composition-based stats.
Identities = 103/225 (45%), Positives = 154/225 (68%), Gaps = 4/225 (1%)
Query: 1 MSFFEQYRTGNLVLPNALFFHFKDIFPSADDFLVWQFLYLQTTTQIGEVASSQIAQATGK 60
M++ EQY++G L LP+ALFFHFK IF +ADDFLVWQF YLQ TT + ++ S+IA + K
Sbjct: 1 MTYLEQYQSGQLTLPSALFFHFKSIFKTADDFLVWQFFYLQNTTNLSDLTPSRIATSLDK 60
Query: 61 TPTEVNKSITTLTEAGLLDFTTVKVNNEIKMVVDASPALAVLDKLVSSENSTTGPVAGQP 120
T ++N+SI+ LT GLLD T+++N+EI+++ D SP LDKL +N + +
Sbjct: 61 TVADINRSISNLTSQGLLDVKTIELNHEIEIIFDTSPVFTKLDKLFEEDNQVI--IDNKT 118
Query: 121 TNTQLIKQLTDELEQALG-ILNPMVIEDLNKEIQEEHTDPELIREALKEAVFNRKTNWNY 179
+++ +K L + E+ LG +L+P +EDL K +QE+ TDP+++R AL+EAVFN KT+WNY
Sbjct: 119 SDSNRLKDLVGDFERELGRLLSPFELEDLQKTLQEDQTDPDIVRAALREAVFNGKTSWNY 178
Query: 180 IKGVLRNWKLSGITTKIQVEERRLEHQGKKQHH-QVSDEFKTGMD 223
I +LRNW+ G+TT Q+EER+ + + +SD+FK M+
Sbjct: 179 INAILRNWRREGLTTLRQIEERKQAREDNQMKDLAISDDFKNAMN 223
>gi|50914101|ref|YP_060073.1| DNA replication protein [Streptococcus pyogenes MGAS10394]
gi|94994219|ref|YP_602317.1| DNA replication protein dnaD [Streptococcus pyogenes MGAS10750]
gi|50903175|gb|AAT86890.1| DNA replication protein [Streptococcus pyogenes MGAS10394]
gi|94547727|gb|ABF37773.1| DNA replication protein dnaD [Streptococcus pyogenes MGAS10750]
Length = 227
Score = 204 bits (519), Expect = 4e-51, Method: Composition-based stats.
Identities = 103/193 (53%), Positives = 140/193 (72%), Gaps = 4/193 (2%)
Query: 1 MSFFEQYRTGNLVLPNALFFHFKDIFPSADDFLVWQFLYLQTTTQIGEVASSQIAQATGK 60
MSF E Y++GNLV+P+AL FH+KD+F S+DDFLVWQF YLQ TT+ ++A SQIA A GK
Sbjct: 1 MSFLEHYKSGNLVIPSALLFHYKDLFKSSDDFLVWQFFYLQNTTKRDDLAPSQIAHALGK 60
Query: 61 TPTEVNKSITTLTEAGLLDFTTVKVNNEIKMVVDASPALAVLDKLVSSENSTTGPVAGQP 120
+ ++NK I++LT GLLD T+++ EI+++ DASP LA LD+L S+ +T P
Sbjct: 61 SVADINKIISSLTSQGLLDMRTIELTGEIEIIFDASPVLAKLDQLFVSQTATEIDKQETP 120
Query: 121 TNTQLIKQLTDELEQALG-ILNPMVIEDLNKEIQEEHTDPELIREALKEAVFNRKTNWNY 179
+ K+L DE E+ LG L+P +EDL K ++++ TDP+LIREALKEAVFN KTNW Y
Sbjct: 121 NH---FKRLVDEFERELGRFLSPFELEDLEKTLRDDKTDPDLIREALKEAVFNGKTNWKY 177
Query: 180 IKGVLRNWKLSGI 192
I+ +LRNW+ GI
Sbjct: 178 IQAILRNWRKEGI 190
>gi|19745990|ref|NP_607126.1| hypothetical protein spyM18_0985 [Streptococcus pyogenes MGAS8232]
gi|21910177|ref|NP_664445.1| hypothetical protein SpyM3_0641 [Streptococcus pyogenes MGAS315]
gi|28896123|ref|NP_802473.1| hypothetical protein SPs1211 [Streptococcus pyogenes SSI-1]
gi|56808325|ref|ZP_00366086.1| COG3935: Putative primosome component and related proteins
[Streptococcus pyogenes M49 591]
gi|71903374|ref|YP_280177.1| phage protein [Streptococcus pyogenes MGAS6180]
gi|94988418|ref|YP_596519.1| DNA replication protein [Streptococcus pyogenes MGAS9429]
gi|94992298|ref|YP_600397.1| DNA replication protein dnaD [Streptococcus pyogenes MGAS2096]
gi|139473912|ref|YP_001128628.1| putative DNA replication protein DnaD [Streptococcus pyogenes str.
Manfredo]
gi|19748152|gb|AAL97625.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232]
gi|21904370|gb|AAM79248.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315]
gi|28811373|dbj|BAC64306.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1]
gi|71802469|gb|AAX71822.1| phage protein [Streptococcus pyogenes MGAS6180]
gi|94541926|gb|ABF31975.1| DNA replication protein [Streptococcus pyogenes MGAS9429]
gi|94545806|gb|ABF35853.1| DNA replication protein dnaD [Streptococcus pyogenes MGAS2096]
gi|134272159|emb|CAM30404.1| putative DNA replication protein DnaD [Streptococcus pyogenes str.
Manfredo]
Length = 227
Score = 204 bits (518), Expect = 5e-51, Method: Composition-based stats.
Identities = 103/193 (53%), Positives = 140/193 (72%), Gaps = 4/193 (2%)
Query: 1 MSFFEQYRTGNLVLPNALFFHFKDIFPSADDFLVWQFLYLQTTTQIGEVASSQIAQATGK 60
MSF E Y++GNLV+P+AL FH+KD+F S+DDFLVWQF YLQ TT+ ++A SQIA A GK
Sbjct: 1 MSFLEHYKSGNLVIPSALLFHYKDLFKSSDDFLVWQFFYLQNTTKRDDLAPSQIAHALGK 60
Query: 61 TPTEVNKSITTLTEAGLLDFTTVKVNNEIKMVVDASPALAVLDKLVSSENSTTGPVAGQP 120
+ ++NK I++LT GLLD T+++ EI+++ DASP LA LD+L S+ +T P
Sbjct: 61 SVADINKIISSLTSQGLLDMRTIELTGEIEIIFDASPVLAKLDQLFVSQTATEIDKQETP 120
Query: 121 TNTQLIKQLTDELEQALG-ILNPMVIEDLNKEIQEEHTDPELIREALKEAVFNRKTNWNY 179
+ K+L DE E+ LG L+P +EDL K ++++ TDP+LIREALKEAVFN KTNW Y
Sbjct: 121 NH---FKRLVDEFERELGRFLSPFELEDLEKTLRDDKTDPDLIREALKEAVFNGKTNWKY 177
Query: 180 IKGVLRNWKLSGI 192
I+ +LRNW+ GI
Sbjct: 178 IQAILRNWRKEGI 190
>gi|15674948|ref|NP_269122.1| hypothetical protein SPy_0928 [Streptococcus pyogenes M1 GAS]
gi|71910542|ref|YP_282092.1| DNA replication protein [Streptococcus pyogenes MGAS5005]
gi|13622092|gb|AAK33843.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS]
gi|71853324|gb|AAZ51347.1| DNA replication protein [Streptococcus pyogenes MGAS5005]
Length = 227
Score = 204 bits (518), Expect = 5e-51, Method: Composition-based stats.
Identities = 103/193 (53%), Positives = 140/193 (72%), Gaps = 4/193 (2%)
Query: 1 MSFFEQYRTGNLVLPNALFFHFKDIFPSADDFLVWQFLYLQTTTQIGEVASSQIAQATGK 60
MSF E Y++GNLV+P+AL FH+KD+F S+DDFLVWQF YLQ TT+ ++A SQIA A GK
Sbjct: 1 MSFLEHYKSGNLVIPSALLFHYKDLFKSSDDFLVWQFFYLQNTTKRDDLAPSQIAHALGK 60
Query: 61 TPTEVNKSITTLTEAGLLDFTTVKVNNEIKMVVDASPALAVLDKLVSSENSTTGPVAGQP 120
+ ++NK I++LT GLLD T+++ EI+++ DASP LA LD+L S+ +T P
Sbjct: 61 SVADINKIISSLTNQGLLDMRTIELTGEIEIIFDASPVLAKLDQLFVSQTATEIDKQETP 120
Query: 121 TNTQLIKQLTDELEQALG-ILNPMVIEDLNKEIQEEHTDPELIREALKEAVFNRKTNWNY 179
+ K+L DE E+ LG L+P +EDL K ++++ TDP+LIREALKEAVFN KTNW Y
Sbjct: 121 NH---FKRLVDEFERELGRFLSPFELEDLEKTLRDDKTDPDLIREALKEAVFNGKTNWKY 177
Query: 180 IKGVLRNWKLSGI 192
I+ +LRNW+ GI
Sbjct: 178 IQAILRNWRKEGI 190
>gi|94990297|ref|YP_598397.1| DNA replication protein dnaD [Streptococcus pyogenes MGAS10270]
gi|94543805|gb|ABF33853.1| DNA replication protein dnaD [Streptococcus pyogenes MGAS10270]
Length = 227
Score = 202 bits (514), Expect = 1e-50, Method: Composition-based stats.
Identities = 102/193 (52%), Positives = 139/193 (72%), Gaps = 4/193 (2%)
Query: 1 MSFFEQYRTGNLVLPNALFFHFKDIFPSADDFLVWQFLYLQTTTQIGEVASSQIAQATGK 60
MSF E Y++GNLV+P+AL FH+KD+F S+DDFLVWQF YLQ TT+ ++A SQIA A GK
Sbjct: 1 MSFLEHYKSGNLVIPSALLFHYKDLFKSSDDFLVWQFFYLQNTTKRDDLAPSQIAHALGK 60
Query: 61 TPTEVNKSITTLTEAGLLDFTTVKVNNEIKMVVDASPALAVLDKLVSSENSTTGPVAGQP 120
+ ++NK I++LT GLLD T+++ EI+++ DASP L LD+L S+ +T P
Sbjct: 61 SVADINKIISSLTSQGLLDMRTIELTGEIEIIFDASPVLVKLDQLFVSQTATEIDKQETP 120
Query: 121 TNTQLIKQLTDELEQALG-ILNPMVIEDLNKEIQEEHTDPELIREALKEAVFNRKTNWNY 179
+ K+L DE E+ LG L+P +EDL K ++++ TDP+LIREALKEAVFN KTNW Y
Sbjct: 121 NH---FKRLVDEFERELGRFLSPFELEDLEKTLRDDKTDPDLIREALKEAVFNGKTNWKY 177
Query: 180 IKGVLRNWKLSGI 192
I+ +LRNW+ GI
Sbjct: 178 IQAILRNWRKEGI 190
>gi|157074559|gb|ABV09242.1| DNA replication protein DnaD [Streptococcus gordonii str. Challis
substr. CH1]
Length = 226
Score = 202 bits (513), Expect = 2e-50, Method: Composition-based stats.
Identities = 111/228 (48%), Positives = 157/228 (68%), Gaps = 11/228 (4%)
Query: 1 MSFFEQYRTGNLVLPNALFFHFKDIFPSADDFLVWQFLYLQTTTQIGEVASSQIAQATGK 60
M++ ++ GNLVLP+AL+FHF++IF S++DFLVWQF YLQ TT + E+ SQIA++ GK
Sbjct: 1 MTYLSAFQQGNLVLPSALYFHFQEIFSSSEDFLVWQFFYLQNTTALEEIEPSQIAESIGK 60
Query: 61 TPTEVNKSITTLTEAGLLDFTTVKVNNEIKMVVDASPALAVLDKLVSSENSTTGPVAGQP 120
T +EVN+ ++ LTE GLL + T+++N EI+ + DASPAL LD+L+ + S QP
Sbjct: 61 TVSEVNRIMSHLTEQGLLQYKTIELNGEIEAIFDASPALEKLDELLGVKASQ------QP 114
Query: 121 T---NTQLIKQLTDELEQALG-ILNPMVIEDLNKEIQEEHTDPELIREALKEAVFNRKTN 176
T + ++K L + +Q LG +L P IEDL K IQE+ T+P+L++ AL+EAVFN K N
Sbjct: 115 TTKASQNVLKDLVETFQQELGRLLTPFEIEDLTKTIQEDKTNPDLVKAALREAVFNGKAN 174
Query: 177 WNYIKGVLRNWKLSGITTKIQVEERRLEHQG-KKQHHQVSDEFKTGMD 223
W YI+ +LRNW+ GITT QVE +R E + Q+ VSD+F MD
Sbjct: 175 WKYIQAILRNWRREGITTLAQVEAKREEREAFNPQNVTVSDDFLRAMD 222
>gi|1813342|dbj|BAA11244.1| ORF2 [Streptococcus mutans]
Length = 231
Score = 202 bits (513), Expect = 2e-50, Method: Composition-based stats.
Identities = 110/225 (48%), Positives = 159/225 (70%), Gaps = 4/225 (1%)
Query: 1 MSFFEQYRTGNLVLPNALFFHFKDIFPSADDFLVWQFLYLQTTTQIGEVASSQIAQATGK 60
MSF + Y++GNLVLP+AL FH+KDIF +ADDFLVWQF Y Q TT++ ++A+SQIA A GK
Sbjct: 1 MSFLQHYKSGNLVLPSALLFHYKDIFSNADDFLVWQFFYFQNTTKMEDIATSQIATAIGK 60
Query: 61 TPTEVNKSITTLTEAGLLDFTTVKVNNEIKMVVDASPALAVLDKLVSSENSTTGPVAGQP 120
T EVN+S++ L LLD T++++ E +++ DA+ AL LD L+++ + TT V+
Sbjct: 61 TVPEVNRSVSNLISQELLDMKTIELDGESEVLFDATLALKKLDDLLTAADETT--VSSSK 118
Query: 121 TNTQLIKQLTDELEQALG-ILNPMVIEDLNKEIQEEHTDPELIREALKEAVFNRKTNWNY 179
+ +K L ++ E+ LG +L+P +EDL K + ++ TDP+L+R AL+EAVFN KTNWNY
Sbjct: 119 GTSNALKDLVEDFERELGRMLSPFELEDLQKTVSDDKTDPDLVRSALREAVFNGKTNWNY 178
Query: 180 IKGVLRNWKLSGITTKIQVEERRLE-HQGKKQHHQVSDEFKTGMD 223
I+ +LRNW+ GI+T QVEERR E Q + VSD+F + M+
Sbjct: 179 IQAILRNWRREGISTLRQVEERRKEREQANPANVTVSDDFLSAMN 223
>gi|24379862|ref|NP_721817.1| conserved hypothetical protein; replication protein DnaD-like
[Streptococcus mutans UA159]
gi|24377835|gb|AAN59123.1|AE014978_14 conserved hypothetical protein; replication protein DnaD-like
[Streptococcus mutans UA159]
Length = 231
Score = 201 bits (510), Expect = 4e-50, Method: Composition-based stats.
Identities = 110/225 (48%), Positives = 159/225 (70%), Gaps = 4/225 (1%)
Query: 1 MSFFEQYRTGNLVLPNALFFHFKDIFPSADDFLVWQFLYLQTTTQIGEVASSQIAQATGK 60
MSF + Y++GNLVLP+AL FH+KDIF +ADDFLVWQF Y Q TT++ ++A+SQIA A GK
Sbjct: 1 MSFLQHYKSGNLVLPSALLFHYKDIFSNADDFLVWQFFYFQNTTKMEDIATSQIATAIGK 60
Query: 61 TPTEVNKSITTLTEAGLLDFTTVKVNNEIKMVVDASPALAVLDKLVSSENSTTGPVAGQP 120
T EVN+S++ L LLD T++++ E +++ DA+ AL LD L+++ + TT V+
Sbjct: 61 TVPEVNRSVSNLISQELLDMKTIELDGESEVLFDATLALKKLDDLLTAADETT--VSSSK 118
Query: 121 TNTQLIKQLTDELEQALG-ILNPMVIEDLNKEIQEEHTDPELIREALKEAVFNRKTNWNY 179
+ +K L ++ E+ LG +L+P +EDL K + ++ TDP+L+R AL+EAVFN KTNWNY
Sbjct: 119 GISNALKDLVEDFERELGRMLSPFELEDLQKTVSDDKTDPDLVRSALREAVFNGKTNWNY 178
Query: 180 IKGVLRNWKLSGITTKIQVEERRLE-HQGKKQHHQVSDEFKTGMD 223
I+ +LRNW+ GI+T QVEERR E Q + VSD+F + M+
Sbjct: 179 IQAILRNWRHEGISTLRQVEERRKEREQANPANVTVSDDFLSAMN 223
>gi|15903476|ref|NP_359026.1| hypothetical protein spr1433 [Streptococcus pneumoniae R6]
gi|116516031|ref|YP_816865.1| hypothetical protein SPD_1405 [Streptococcus pneumoniae D39]
gi|15459088|gb|AAL00237.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
gi|116076607|gb|ABJ54327.1| conserved hypothetical protein [Streptococcus pneumoniae D39]
Length = 225
Score = 195 bits (496), Expect = 1e-48, Method: Composition-based stats.
Identities = 104/225 (46%), Positives = 153/225 (68%), Gaps = 6/225 (2%)
Query: 1 MSFFEQYRTGNLVLPNALFFHFKDIFPSADDFLVWQFLYLQTTTQIGEVASSQIAQATGK 60
M++ + +++G LVLP+AL HFK++FPS+DDFLVWQF YLQ TT + E++ SQIA+ GK
Sbjct: 1 MTYLDAFKSGTLVLPSALLLHFKELFPSSDDFLVWQFFYLQNTTGLEEMSPSQIAERIGK 60
Query: 61 TPTEVNKSITTLTEAGLLDFTTVKVNNEIKMVVDASPALAVLDKLVSSENSTTGPVAGQP 120
++VN+SI+ LTE GLL + T+++N EI+++ DAS AL LD L + +S++ Q
Sbjct: 61 EISDVNQSISNLTERGLLQYRTIELNGEIELLFDASLALERLDDLFGAVHSSS----DQL 116
Query: 121 TNTQLIKQLTDELEQALG-ILNPMVIEDLNKEIQEEHTDPELIREALKEAVFNRKTNWNY 179
T+ +K L + +Q LG +L P IEDL K ++E+ T +LI+EAL+EAV N K NW Y
Sbjct: 117 TSQNQLKDLVETFQQELGRLLTPFEIEDLTKTLKEDGTSADLIKEALREAVLNGKPNWKY 176
Query: 180 IKGVLRNWKLSGITTKIQVEERRLEHQGKK-QHHQVSDEFKTGMD 223
I+ +LRNW+ GI + Q+E +R E + Q QVS +F+ MD
Sbjct: 177 IQAILRNWRHEGIKSVAQIEAKRAEREASNPQLTQVSADFRNAMD 221
>gi|149022045|ref|ZP_01836007.1| triosephosphate isomerase [Streptococcus pneumoniae SP23-BS72]
gi|147929889|gb|EDK80878.1| triosephosphate isomerase [Streptococcus pneumoniae SP23-BS72]
Length = 225
Score = 195 bits (496), Expect = 2e-48, Method: Composition-based stats.
Identities = 104/225 (46%), Positives = 152/225 (67%), Gaps = 6/225 (2%)
Query: 1 MSFFEQYRTGNLVLPNALFFHFKDIFPSADDFLVWQFLYLQTTTQIGEVASSQIAQATGK 60
M++ + +++G LVLP+AL HFK++FPS+DDFLVWQF YLQ TT + E++ SQIA+ GK
Sbjct: 1 MTYLDAFKSGTLVLPSALLLHFKELFPSSDDFLVWQFFYLQNTTGLEEISPSQIAERIGK 60
Query: 61 TPTEVNKSITTLTEAGLLDFTTVKVNNEIKMVVDASPALAVLDKLVSSENSTTGPVAGQP 120
++VN+SI+ LTE GLL + T+++N EI+++ DAS AL LD L + +S++ Q
Sbjct: 61 EISDVNQSISNLTERGLLQYRTIELNGEIELLFDASLALERLDDLFGAVHSSS----DQL 116
Query: 121 TNTQLIKQLTDELEQALG-ILNPMVIEDLNKEIQEEHTDPELIREALKEAVFNRKTNWNY 179
T +K L + +Q LG +L P IEDL K ++E+ T +LI+EAL+EAV N K NW Y
Sbjct: 117 TPQNQLKDLVETFQQELGRLLTPFEIEDLTKTLKEDGTSADLIKEALREAVLNGKPNWKY 176
Query: 180 IKGVLRNWKLSGITTKIQVEERRLEHQGKK-QHHQVSDEFKTGMD 223
I+ +LRNW+ GI + Q+E +R E + Q QVS +F+ MD
Sbjct: 177 IQAILRNWRHEGIKSVAQIEAKRAEREASNPQLTQVSADFRNAMD 221
>gi|148984929|ref|ZP_01818182.1| triosephosphate isomerase [Streptococcus pneumoniae SP3-BS71]
gi|148993399|ref|ZP_01822916.1| homoserine O-succinyltransferase [Streptococcus pneumoniae
SP9-BS68]
gi|149007509|ref|ZP_01831144.1| homoserine O-succinyltransferase [Streptococcus pneumoniae
SP18-BS74]
gi|149007872|ref|ZP_01831459.1| homoserine O-succinyltransferase [Streptococcus pneumoniae
SP18-BS74]
gi|147760599|gb|EDK67573.1| homoserine O-succinyltransferase [Streptococcus pneumoniae
SP18-BS74]
gi|147760868|gb|EDK67838.1| homoserine O-succinyltransferase [Streptococcus pneumoniae
SP18-BS74]
gi|147922951|gb|EDK74067.1| triosephosphate isomerase [Streptococcus pneumoniae SP3-BS71]
gi|147927954|gb|EDK78974.1| homoserine O-succinyltransferase [Streptococcus pneumoniae
SP9-BS68]
Length = 225
Score = 194 bits (494), Expect = 3e-48, Method: Composition-based stats.
Identities = 104/225 (46%), Positives = 152/225 (67%), Gaps = 6/225 (2%)
Query: 1 MSFFEQYRTGNLVLPNALFFHFKDIFPSADDFLVWQFLYLQTTTQIGEVASSQIAQATGK 60
M++ + +++G LVLP+AL HFK++FPS+DDFLVWQF YLQ TT + E++ SQIA+ GK
Sbjct: 1 MTYLDAFKSGTLVLPSALLLHFKELFPSSDDFLVWQFFYLQNTTGLEEMSPSQIAERIGK 60
Query: 61 TPTEVNKSITTLTEAGLLDFTTVKVNNEIKMVVDASPALAVLDKLVSSENSTTGPVAGQP 120
++VN+SI+ LTE GLL + T+++N EI+++ DAS AL LD L + +S++ Q
Sbjct: 61 EISDVNQSISNLTERGLLQYRTIELNGEIELLFDASLALERLDDLFGAVHSSS----DQL 116
Query: 121 TNTQLIKQLTDELEQALG-ILNPMVIEDLNKEIQEEHTDPELIREALKEAVFNRKTNWNY 179
T +K L + +Q LG +L P IEDL K ++E+ T +LI+EAL+EAV N K NW Y
Sbjct: 117 TPQNQLKDLVETFQQELGRLLTPFEIEDLTKTLKEDGTSADLIKEALREAVLNGKPNWKY 176
Query: 180 IKGVLRNWKLSGITTKIQVEERRLEHQGKK-QHHQVSDEFKTGMD 223
I+ +LRNW+ GI + Q+E +R E + Q QVS +F+ MD
Sbjct: 177 IQAILRNWRHEGIKSVAQIEAKRAEREASNPQLTQVSADFRNAMD 221
>gi|148988629|ref|ZP_01820062.1| triosephosphate isomerase [Streptococcus pneumoniae SP6-BS73]
gi|149003189|ref|ZP_01828085.1| homoserine O-succinyltransferase [Streptococcus pneumoniae
SP14-BS69]
gi|147758649|gb|EDK65646.1| homoserine O-succinyltransferase [Streptococcus pneumoniae
SP14-BS69]
gi|147925830|gb|EDK76905.1| triosephosphate isomerase [Streptococcus pneumoniae SP6-BS73]
Length = 225
Score = 194 bits (492), Expect = 5e-48, Method: Composition-based stats.
Identities = 104/225 (46%), Positives = 150/225 (66%), Gaps = 6/225 (2%)
Query: 1 MSFFEQYRTGNLVLPNALFFHFKDIFPSADDFLVWQFLYLQTTTQIGEVASSQIAQATGK 60
M++ + +++G LVLP+AL HFK++FPS+DDFLVWQF YLQ TT + E++ SQIA+ GK
Sbjct: 1 MTYLDAFKSGTLVLPSALLLHFKELFPSSDDFLVWQFFYLQNTTGLEEMSPSQIAERIGK 60
Query: 61 TPTEVNKSITTLTEAGLLDFTTVKVNNEIKMVVDASPALAVLDKLVSSENSTTGPVAGQP 120
++VN+SI+ LTE GLL + T+++N EI++ DAS AL LD L + S++ Q
Sbjct: 61 EISDVNQSISNLTERGLLQYRTIELNGEIELFFDASLALERLDDLFGAVRSSS----DQL 116
Query: 121 TNTQLIKQLTDELEQALG-ILNPMVIEDLNKEIQEEHTDPELIREALKEAVFNRKTNWNY 179
T +K L + +Q LG +L P IEDL K ++E+ T +LI+EAL+EAV N K NW Y
Sbjct: 117 TPQNQLKDLVETFQQELGRLLTPFEIEDLTKTLKEDGTSADLIKEALREAVLNGKPNWKY 176
Query: 180 IKGVLRNWKLSGITTKIQVEERRLEHQGKK-QHHQVSDEFKTGMD 223
I+ +LRNW+ GI + Q+E +R E + Q QVS +F+ MD
Sbjct: 177 IQAILRNWRHEGIKSVAQIEAKRAEREASNPQLTQVSADFRNAMD 221
>gi|148997357|ref|ZP_01824962.1| homoserine O-succinyltransferase [Streptococcus pneumoniae
SP11-BS70]
gi|147756412|gb|EDK63453.1| homoserine O-succinyltransferase [Streptococcus pneumoniae
SP11-BS70]
Length = 225
Score = 193 bits (491), Expect = 6e-48, Method: Composition-based stats.
Identities = 104/225 (46%), Positives = 151/225 (67%), Gaps = 6/225 (2%)
Query: 1 MSFFEQYRTGNLVLPNALFFHFKDIFPSADDFLVWQFLYLQTTTQIGEVASSQIAQATGK 60
M++ + +++G LVLP+AL HFK++FPS+DDFLVWQF YLQ TT + E++ SQIA+ GK
Sbjct: 1 MTYLDAFKSGTLVLPSALLLHFKELFPSSDDFLVWQFFYLQNTTGLEEISPSQIAERIGK 60
Query: 61 TPTEVNKSITTLTEAGLLDFTTVKVNNEIKMVVDASPALAVLDKLVSSENSTTGPVAGQP 120
++VN+SI+ LTE GLL + T+++N EI+++ DAS AL LD L + +S++ Q
Sbjct: 61 EISDVNQSISNLTERGLLQYRTIELNGEIELLFDASLALERLDDLFGAVHSSS----DQL 116
Query: 121 TNTQLIKQLTDELEQALG-ILNPMVIEDLNKEIQEEHTDPELIREALKEAVFNRKTNWNY 179
T +K L + +Q LG +L P IEDL K ++E+ T +LI+EAL+EAV N K NW Y
Sbjct: 117 TPQNQLKDLVETFQQELGRLLTPFEIEDLTKTLKEDGTSADLIKEALREAVLNGKPNWKY 176
Query: 180 IKGVLRNWKLSGITTKIQVEERRLEHQGKK-QHHQVSDEFKTGMD 223
I+ +LRNW+ GI + Q+E +R E + Q QVS +F MD
Sbjct: 177 IQAILRNWRHEGIKSVAQIEAKRAEREASNPQLTQVSADFINAMD 221
>gi|149012691|ref|ZP_01833667.1| homoserine O-succinyltransferase [Streptococcus pneumoniae
SP19-BS75]
gi|147763291|gb|EDK70229.1| homoserine O-succinyltransferase [Streptococcus pneumoniae
SP19-BS75]
Length = 225
Score = 193 bits (490), Expect = 9e-48, Method: Composition-based stats.
Identities = 104/225 (46%), Positives = 151/225 (67%), Gaps = 6/225 (2%)
Query: 1 MSFFEQYRTGNLVLPNALFFHFKDIFPSADDFLVWQFLYLQTTTQIGEVASSQIAQATGK 60
M++ + +++G LVLP+AL HFK++FPS+DDFLVWQF YLQ TT + E++ SQIA+ GK
Sbjct: 1 MTYLDAFKSGALVLPSALLLHFKELFPSSDDFLVWQFFYLQNTTGLEEMSPSQIAERIGK 60
Query: 61 TPTEVNKSITTLTEAGLLDFTTVKVNNEIKMVVDASPALAVLDKLVSSENSTTGPVAGQP 120
++VN+SI+ LTE GLL + T+++N EI+++ DAS AL LD L + +S++ Q
Sbjct: 61 EISDVNQSISNLTERGLLQYRTIELNGEIELLFDASLALERLDDLFGAVHSSS----DQL 116
Query: 121 TNTQLIKQLTDELEQALG-ILNPMVIEDLNKEIQEEHTDPELIREALKEAVFNRKTNWNY 179
T +K L + +Q LG +L P IEDL K ++E+ T +LI+EAL+EAV N K NW Y
Sbjct: 117 TPQNQLKDLVETFQQELGRLLTPFEIEDLTKTLKEDGTSADLIKEALREAVLNGKPNWKY 176
Query: 180 IKGVLRNWKLSGITTKIQVEERRLEHQGKK-QHHQVSDEFKTGMD 223
I+ +LRNW+ GI + Q+E +R E + Q QVS +F MD
Sbjct: 177 IQAILRNWRHEGIKSVAQIEAKRAEREASNPQLTQVSADFINAMD 221
>gi|15901417|ref|NP_346021.1| hypothetical protein SP_1575 [Streptococcus pneumoniae TIGR4]
gi|111658481|ref|ZP_01409154.1| hypothetical protein SpneT_02000381 [Streptococcus pneumoniae
TIGR4]
gi|14973066|gb|AAK75661.1| conserved hypothetical protein [Streptococcus pneumoniae TIGR4]
Length = 225
Score = 192 bits (489), Expect = 1e-47, Method: Composition-based stats.
Identities = 104/225 (46%), Positives = 151/225 (67%), Gaps = 6/225 (2%)
Query: 1 MSFFEQYRTGNLVLPNALFFHFKDIFPSADDFLVWQFLYLQTTTQIGEVASSQIAQATGK 60
M++ + +++G LVLP+AL HFK++FPS+DDFLVWQF YLQ TT + E++ SQIA+ GK
Sbjct: 1 MTYLDAFKSGTLVLPSALLLHFKELFPSSDDFLVWQFFYLQNTTGLEEMSPSQIAERIGK 60
Query: 61 TPTEVNKSITTLTEAGLLDFTTVKVNNEIKMVVDASPALAVLDKLVSSENSTTGPVAGQP 120
++VN+SI+ LTE GLL + T+++N EI+++ DAS AL LD L + +S++ Q
Sbjct: 61 EISDVNQSISNLTERGLLQYRTIELNGEIELLFDASLALERLDDLFGAVHSSS----DQL 116
Query: 121 TNTQLIKQLTDELEQALG-ILNPMVIEDLNKEIQEEHTDPELIREALKEAVFNRKTNWNY 179
T +K L + +Q LG +L P IEDL K ++E+ T +LI+EAL+EAV N K NW Y
Sbjct: 117 TPQNQLKDLVETFQQELGRLLTPFEIEDLTKTLKEDGTSADLIKEALREAVLNGKPNWKY 176
Query: 180 IKGVLRNWKLSGITTKIQVEERRLEHQGKK-QHHQVSDEFKTGMD 223
I+ +LRNW+ GI + Q+E +R E + Q QVS +F MD
Sbjct: 177 IQAILRNWRHEGIKSVAQIEAKRAEREASNPQLTQVSADFINAMD 221
>gi|146318959|ref|YP_001198671.1| Putative primosome component and related proteins [Streptococcus
suis 05ZYH33]
gi|146321168|ref|YP_001200879.1| Putative primosome component and related proteins [Streptococcus
suis 98HAH33]
gi|145689765|gb|ABP90271.1| Putative primosome component and related proteins [Streptococcus
suis 05ZYH33]
gi|145691974|gb|ABP92479.1| Putative primosome component and related proteins [Streptococcus
suis 98HAH33]
Length = 224
Score = 191 bits (485), Expect = 3e-47, Method: Composition-based stats.
Identities = 104/225 (46%), Positives = 151/225 (67%), Gaps = 7/225 (3%)
Query: 1 MSFFEQYRTGNLVLPNALFFHFKDIFPSADDFLVWQFLYLQTTTQIGEVASSQIAQATGK 60
M++ +Q+R G+LVLP A+ FH++++FPSADDFL+WQF Q ++ I +A S+IAQATGK
Sbjct: 1 MNYSQQFRQGHLVLPAAILFHYQELFPSADDFLIWQFFLYQNSSAIESLAPSEIAQATGK 60
Query: 61 TPTEVNKSITTLTEAGLLDFTTVKVNNEIKMVVDASPALAVLDKLVSSENSTTGPVAGQP 120
T +VN++I L +AGLL+F T+ + EI+M+ DA PA LD L++ + + QP
Sbjct: 61 TVAQVNQAIENLQDAGLLEFKTISIAGEIEMIFDALPAFEKLDVLLTPKQAVE---IVQP 117
Query: 121 TNTQLIKQLTDELEQALG-ILNPMVIEDLNKEIQEEHTDPELIREALKEAVFNRKTNWNY 179
N +K L + E+ LG L+P IEDL K I+++ T +L+R ALKEAVFN KTNW Y
Sbjct: 118 END--LKTLVGDFERELGRFLSPFEIEDLQKTIEDDKTSIDLVRAALKEAVFNNKTNWKY 175
Query: 180 IKGVLRNWKLSGITTKIQVEERRLEHQGKK-QHHQVSDEFKTGMD 223
I+ +LRNW+ GITT +QVE + E + + ++ VS +F MD
Sbjct: 176 IQAILRNWRREGITTVVQVEAKNAEREIQTPKNVTVSSDFLDAMD 220
>gi|81096589|ref|ZP_00874928.1| DnaD and phage-associated region [Streptococcus suis 89/1591]
gi|80977361|gb|EAP40905.1| DnaD and phage-associated region [Streptococcus suis 89/1591]
Length = 224
Score = 189 bits (481), Expect = 8e-47, Method: Composition-based stats.
Identities = 104/225 (46%), Positives = 150/225 (66%), Gaps = 7/225 (3%)
Query: 1 MSFFEQYRTGNLVLPNALFFHFKDIFPSADDFLVWQFLYLQTTTQIGEVASSQIAQATGK 60
M++ +Q+R G+LVLP A+ FH++++FPSADDFL+WQF Q ++ I +A S+IAQATGK
Sbjct: 1 MNYSQQFRQGHLVLPAAILFHYQELFPSADDFLIWQFFLYQNSSAIESLAPSEIAQATGK 60
Query: 61 TPTEVNKSITTLTEAGLLDFTTVKVNNEIKMVVDASPALAVLDKLVSSENSTTGPVAGQP 120
T +VN++I L +AGLL+F T+ + EI+M+ DA PA LD L++ + + QP
Sbjct: 61 TVAQVNQAIENLQDAGLLEFKTISIAGEIEMIFDALPAFEKLDVLLTPKQAVE---IVQP 117
Query: 121 TNTQLIKQLTDELEQALG-ILNPMVIEDLNKEIQEEHTDPELIREALKEAVFNRKTNWNY 179
N +K L + E+ LG L+P IEDL K I+++ T +L+R ALKEAVFN KTNW Y
Sbjct: 118 END--LKTLVGDFERELGRFLSPFEIEDLQKTIEDDKTSIDLVRAALKEAVFNNKTNWKY 175
Query: 180 IKGVLRNWKLSGITTKIQVEERRLEHQGKK-QHHQVSDEFKTGMD 223
I+ +LRNW+ GITT QVE + E + + ++ VS +F MD
Sbjct: 176 IQAILRNWRREGITTVAQVEAKNAEREIQTPKNVTVSSDFLDAMD 220
>gi|116511911|ref|YP_809127.1| Putative primosome component related protein [Lactococcus lactis
subsp. cremoris SK11]
gi|116107565|gb|ABJ72705.1| Putative primosome component related protein [Lactococcus lactis
subsp. cremoris SK11]
Length = 222
Score = 147 bits (372), Expect = 3e-34, Method: Composition-based stats.
Identities = 77/216 (35%), Positives = 130/216 (60%), Gaps = 5/216 (2%)
Query: 1 MSFFEQYRTGNLVLPNALFFHFKDIFPSADDFLVWQFLYLQTTTQIGEVASSQIAQATGK 60
M+++++Y G+LVLP + HF ++FPSA DFLVW + + + E+A S+IA TGK
Sbjct: 1 MNYYDEYSKGHLVLPTVILSHFSELFPSAFDFLVWLYFF-----ENREIAPSEIADKTGK 55
Query: 61 TPTEVNKSITTLTEAGLLDFTTVKVNNEIKMVVDASPALAVLDKLVSSENSTTGPVAGQP 120
+EVN++I +L++ G + T ++++ E++ D SPA LD+LV S +
Sbjct: 56 KMSEVNQAIDSLSKFGAMKVTLIEIDGEMETFFDISPAFKHLDELVGSPAINLKAEDKKV 115
Query: 121 TNTQLIKQLTDELEQALGILNPMVIEDLNKEIQEEHTDPELIREALKEAVFNRKTNWNYI 180
+ +K+L E +G+++P+ +E+L + E+ D LI++AL+EAV NRK + NYI
Sbjct: 116 QDEGQLKELISMFEAEMGMISPVQMEELRAWLFEDGYDLSLIKQALREAVLNRKVSLNYI 175
Query: 181 KGVLRNWKLSGITTKIQVEERRLEHQGKKQHHQVSD 216
K +LRNWK G+ + +E R++E + K+ D
Sbjct: 176 KAILRNWKNDGVNSVQAIESRQMEREEAKRKKPQED 211
>gi|125624308|ref|YP_001032791.1| DNA replication protein dnaD [Lactococcus lactis subsp. cremoris
MG1363]
gi|124493116|emb|CAL98080.1| DNA replication protein dnaD [Lactococcus lactis subsp. cremoris
MG1363]
Length = 222
Score = 147 bits (371), Expect = 4e-34, Method: Composition-based stats.
Identities = 77/216 (35%), Positives = 129/216 (59%), Gaps = 5/216 (2%)
Query: 1 MSFFEQYRTGNLVLPNALFFHFKDIFPSADDFLVWQFLYLQTTTQIGEVASSQIAQATGK 60
M ++++Y G+LVLP + HF ++FPSA DFLVW + + + E+A S+IA TGK
Sbjct: 1 MDYYDEYSKGHLVLPTVILSHFSELFPSAFDFLVWLYFF-----ENREIAPSEIADKTGK 55
Query: 61 TPTEVNKSITTLTEAGLLDFTTVKVNNEIKMVVDASPALAVLDKLVSSENSTTGPVAGQP 120
+EVN++I +L++ G + T ++++ E++ D SPA LD+LV S +
Sbjct: 56 KMSEVNQAIDSLSKFGAMKVTLIEIDGEMETFFDISPAFKHLDELVGSPALNLKAEDKKV 115
Query: 121 TNTQLIKQLTDELEQALGILNPMVIEDLNKEIQEEHTDPELIREALKEAVFNRKTNWNYI 180
+ +K+L E +G+++P+ +E+L + E+ D LI++AL+EAV NRK + NYI
Sbjct: 116 QDEGQLKELISMFEAEMGMISPVQMEELRAWLFEDGYDLSLIKQALREAVLNRKVSLNYI 175
Query: 181 KGVLRNWKLSGITTKIQVEERRLEHQGKKQHHQVSD 216
K +LRNWK G+ + +E R++E + K+ D
Sbjct: 176 KAILRNWKNDGVNSVQAIESRQMEREEAKRKKPQED 211
>gi|15673052|ref|NP_267226.1| DnaD [Lactococcus lactis subsp. lactis Il1403]
gi|12724025|gb|AAK05168.1|AE006340_1 DNA replication protein DnaD [Lactococcus lactis subsp. lactis
Il1403]
Length = 222
Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 73/216 (33%), Positives = 131/216 (60%), Gaps = 5/216 (2%)
Query: 1 MSFFEQYRTGNLVLPNALFFHFKDIFPSADDFLVWQFLYLQTTTQIGEVASSQIAQATGK 60
M+++++Y G+LVLPN + HF +FPSA DFL+W + + + ++A S+IA+ TGK
Sbjct: 1 MNYYDEYSKGHLVLPNVILAHFSKLFPSAFDFLIWLYFF-----ENQDIAPSEIAEKTGK 55
Query: 61 TPTEVNKSITTLTEAGLLDFTTVKVNNEIKMVVDASPALAVLDKLVSSENSTTGPVAGQP 120
+EVN +I L++ G + T ++++ +++ D SPA LD+++ +++ P +
Sbjct: 56 KLSEVNLAIDNLSKFGAMKVTLIEIDGDMETFFDISPAFKHLDEILGGAVASSTPENEKV 115
Query: 121 TNTQLIKQLTDELEQALGILNPMVIEDLNKEIQEEHTDPELIREALKEAVFNRKTNWNYI 180
+K+L E +G+++P+ +E+L + E+ D LI++AL+EAV NRK + NYI
Sbjct: 116 QEEGQLKELVSMFEAEMGMISPVQMEELRAWLFEDGYDFSLIKQALREAVLNRKVSLNYI 175
Query: 181 KGVLRNWKLSGITTKIQVEERRLEHQGKKQHHQVSD 216
K +LRNWK G+ + +E R++E + K+ D
Sbjct: 176 KAILRNWKNDGVNSLQAIESRQMEREEAKRKKPQED 211
>gi|29375730|ref|NP_814884.1| DNA replication protein DnaD, putative [Enterococcus faecalis V583]
gi|29343191|gb|AAO80954.1| DNA replication protein DnaD, putative [Enterococcus faecalis V583]
Length = 238
Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 66/225 (29%), Positives = 102/225 (45%), Gaps = 21/225 (9%)
Query: 1 MSFFEQYRTGNLVLPNALFFHFKDIFPSADDFLVWQFLYLQTTTQIGEVASS--QIAQAT 58
+S E G + N LF H++ I D+FL L L + G++ IA+
Sbjct: 2 LSIREYLEAGETTISNLLFDHYQKIGLKDDEFLF--LLQLFRSQNAGDLFPDLMAIAETM 59
Query: 59 GKTPTEVNKSITTLTEAGLLDFTTVKVNNEIKMVVDASPALAVLDKL-VSSENSTTGPVA 117
GKTP + K + L G + T + N+ ++D L V K+ + + S V
Sbjct: 60 GKTPDTIYKLLNQLVSRGFIRIETQQ--NQKGQMMDTYDLLPVFQKIQLFLQTSKEKQVV 117
Query: 118 GQPTNTQLIKQLTDELEQALG-ILNPMVIEDLNKEIQEEHTDPELIREALKEAVFNRKTN 176
+ IKQL E+ G L+P+ +E + + + +H PELIR AL+EAV N+ +
Sbjct: 118 ANHEDE--IKQLYQGFEKEFGRPLSPIELEMIGQWLNTDHYSPELIRLALREAVLNQAYS 175
Query: 177 WNYIKGVLRNWKLSGITTKIQVE-----------ERRLEHQGKKQ 210
YI +L W+ ITTK QV + +E QG+ Q
Sbjct: 176 LKYIDRILLAWERKNITTKEQVAADQKKRKDSMIQNEIEQQGQTQ 220
>gi|56807704|ref|ZP_00365579.1| COG3935: Putative primosome component and related proteins
[Streptococcus pyogenes M49 591]
gi|71910856|ref|YP_282406.1| phage protein [Streptococcus pyogenes MGAS5005]
gi|71853638|gb|AAZ51661.1| phage protein [Streptococcus pyogenes MGAS5005]
Length = 276
Score = 64.3 bits (155), Expect = 6e-09, Method: Composition-based stats.
Identities = 46/183 (25%), Positives = 87/183 (47%), Gaps = 11/183 (6%)
Query: 47 GEVASSQIAQATGKTPTEVNKSITTLTEAGLLDFTTVKVNN----EIKMVVDASPALAV- 101
G + + I GK+ T+ ++ +A L ++K EI++ +D L
Sbjct: 95 GAIYMTNIQNFVGKSSTDADRKRIEYAKAKQLGQISMKCAEKSPPEIEIELDKERELDKK 154
Query: 102 ----LDKLVSSENSTTGPVAGQPTNTQLIKQLTDELEQALGILNPMVIEDLNKEIQEEHT 157
+DK + E + N +K ++D +Q +GIL+P E L+ I
Sbjct: 155 IDINIDKELEVEEEIKD--SSSAANVNNLKIISDYFQQEIGILSPNQFEQLSDYITITKM 212
Query: 158 DPELIREALKEAVFNRKTNWNYIKGVLRNWKLSGITTKIQVEERRLEHQGKKQHHQVSDE 217
+ ++++EA+ A N K ++ Y+ +LRNW+ +GI T ++VEE + + Q +K + E
Sbjct: 213 EVDVVKEAITRAADNSKRSFGYVNSILRNWRQNGILTMVKVEEEQRQFQSRKSKQEEVSE 272
Query: 218 FKT 220
+ T
Sbjct: 273 YDT 275
>gi|28378422|ref|NP_785314.1| DNA replication protein DnaD [Lactobacillus plantarum WCFS1]
gi|28271258|emb|CAD64162.1| DNA replication protein DnaD [Lactobacillus plantarum WCFS1]
Length = 241
Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 59/231 (25%), Positives = 109/231 (47%), Gaps = 23/231 (9%)
Query: 10 GNLVLPNALFFHFKDIFPSADDFLVW-QFLYL-QTTTQIGEVASSQIAQATGKTPTEVNK 67
G + NAL H+++I + D+ LV+ QF L Q + A IA++ G++ V +
Sbjct: 12 GQTTIANALLAHYREIGVTNDELLVYLQFKRLIDQGNQFPDAAV--IAKSLGESTNAVFQ 69
Query: 68 SITTLTEAGLLDFTTVKVNNEIKMVVDASPALAVLDKLVSSENSTTGPVAGQPTNTQLIK 127
+ + LL ++ +++ + D + DKL + + QP +TQ +
Sbjct: 70 RLHEMLAKKLLTIESITADDQ--KIHDRYNFDGLYDKLAVA-------LKKQPVSTQASE 120
Query: 128 QLTDE---------LEQALGI-LNPMVIEDLNKEIQEEHTDPELIREALKEAVFNRKTNW 177
Q T E ++ G L+P+ +E ++K E+H +PE+I AL+EAV + N
Sbjct: 121 QATSENSRQKVFRAIQTEFGRDLSPIEMESISKWFDEDHYEPEVIELALREAVLRQVYNL 180
Query: 178 NYIKGVLRNWKLSGITTKIQVEERRLEHQGKKQHHQVSDEFKTGMDAARQL 228
Y+ +L NW+ + T QVE R ++ + + +TG +A ++
Sbjct: 181 TYMDRILLNWQKRNLKTAAQVEAERQRSIEQRLNSAPQPQRQTGANAGPKI 231
>gi|15614260|ref|NP_242563.1| initiation of chromosome replication [Bacillus halodurans C-125]
gi|10174314|dbj|BAB05416.1| initiation of chromosome replication [Bacillus halodurans C-125]
Length = 233
Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 54/196 (27%), Positives = 90/196 (45%), Gaps = 12/196 (6%)
Query: 10 GNLVLPNALFFHFKDIFPSADDFLVWQFLYLQTTTQIGEV--ASSQIAQATGKTPTEVNK 67
G L +P L H++ + S D+ + L++QT + G +A E +K
Sbjct: 13 GALSIPKLLMHHYRQL--SLDEQELVALLHIQTFIEEGSSFPTPDDLASRMSLASVECSK 70
Query: 68 SITTLTEAGLLDFTTVKVNNEIKMVVDA---SPALAVLDKLVSSENSTTGPVAGQPTNTQ 124
+ L + G L K ++E ++ + SP L +LV+ E GQ
Sbjct: 71 CLNGLIKKGCLALE--KRSDEEGVIYEQFSLSPLWEKLAELVAREIKQLEEKRGQEEEMT 128
Query: 125 LIKQLTDELEQALGILNPMVIEDLNKEIQEEHTDPELIREALKEAVFNRKTNWNYIKGVL 184
L + E + L +P+ E L+ I ++ PELI+ AL+EAV + K N+ YI +L
Sbjct: 129 LYRLFEREFSRPL---SPIEGETLSMWIDQDQHTPELIKAALREAVISGKLNFRYIDRIL 185
Query: 185 RNWKLSGITTKIQVEE 200
WK +G+TT Q ++
Sbjct: 186 FEWKKNGVTTLDQAKK 201
>gi|32469450|ref|NP_862858.1| gp19 [Streptococcus mitis phage SM1]
gi|32441602|gb|AAP81901.1| gp19 [Streptococcus mitis phage SM1]
Length = 265
Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 32/80 (40%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 139 ILNPMVIEDLNKEIQEEHTDPELIREALKEAVFNRKTNWNYIKGVLRNWKLSGITTKIQV 198
+L+ IE++N ++E D EL++EALK A+ K N YI G+LRNW+++ +TT QV
Sbjct: 186 LLSGFEIEEINHLLKE--NDAELVKEALKIAINLGKPNIKYIGGILRNWQMNQVTTVEQV 243
Query: 199 EERRLEHQGKKQHHQVSDEF 218
+ +H+ KK +V DE+
Sbjct: 244 RQSEKQHKEKKSGQEVKDEW 263
>gi|116491116|ref|YP_810660.1| Putative primosome component or related protein [Oenococcus oeni
PSU-1]
gi|116091841|gb|ABJ56995.1| Putative primosome component or related protein [Oenococcus oeni
PSU-1]
Length = 242
Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 49/205 (23%), Positives = 99/205 (48%), Gaps = 12/205 (5%)
Query: 7 YRTGNLVLPNALFFHFKDIFPSADDFLVWQFLYLQTTTQIGEVASSQIAQATGKTPTEVN 66
+ GN+ +P L ++ I S +D +V L+ + I +S I+ T + +
Sbjct: 9 FAEGNVDIPTRLLRNYHQIGLSNEDLIVVIQLFAFSREAIKLPSSELISARTNFSQNSIQ 68
Query: 67 KSITTLTEAGLLDFTTVKVNNEIKMVVDASPALAVLDKLVSSENSTTGPVAGQPTNTQL- 125
+ + L + + F+ +NN DA +++KLV ++ + +QL
Sbjct: 69 RILEKLLKHKFISFS---MNN------DAYDLSGLIEKLVGGGRVNPNSLSSDKSLSQLG 119
Query: 126 -IKQLTDELEQALG-ILNPMVIEDLNKEIQEEHTDPELIREALKEAVFNRKTNWNYIKGV 183
K+L ++ G +L PM ++ +++ ++++ P+L+ AL +AV + N YI+ +
Sbjct: 120 TQKRLYQTFQREFGRMLTPMELQTISEWLKKDQFSPDLVVTALNQAVNAQILNLRYIEKI 179
Query: 184 LRNWKLSGITTKIQVEERRLEHQGK 208
L NWK + + TK Q E L+H+ +
Sbjct: 180 LLNWKHNNVQTKEQAEADNLQHRQR 204
>gi|118586915|ref|ZP_01544348.1| initiation of chromosome replication [Oenococcus oeni ATCC
BAA-1163]
gi|118432642|gb|EAV39375.1| initiation of chromosome replication [Oenococcus oeni ATCC
BAA-1163]
Length = 242
Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 49/205 (23%), Positives = 99/205 (48%), Gaps = 12/205 (5%)
Query: 7 YRTGNLVLPNALFFHFKDIFPSADDFLVWQFLYLQTTTQIGEVASSQIAQATGKTPTEVN 66
+ GN+ +P L ++ I S +D +V L+ + I +S I+ T + +
Sbjct: 9 FAEGNVDIPTRLLRNYHQIGLSNEDLIVVIQLFAFSREGIKLPSSELISARTNFSQNSIQ 68
Query: 67 KSITTLTEAGLLDFTTVKVNNEIKMVVDASPALAVLDKLVSSENSTTGPVAGQPTNTQL- 125
+ + L + + F+ +NN DA +++KLV ++ + +QL
Sbjct: 69 RILEKLLKHKFISFS---MNN------DAYDLSGLIEKLVGGGRVDPNSLSADKSLSQLG 119
Query: 126 -IKQLTDELEQALG-ILNPMVIEDLNKEIQEEHTDPELIREALKEAVFNRKTNWNYIKGV 183
K+L ++ G +L PM ++ +++ ++++ P+L+ AL +AV + N YI+ +
Sbjct: 120 TQKRLYQTFQREFGRMLTPMELQTISEWLKKDQFSPDLVVTALNQAVNAQILNLRYIEKI 179
Query: 184 LRNWKLSGITTKIQVEERRLEHQGK 208
L NWK + + TK Q E L+H+ +
Sbjct: 180 LLNWKHNNVQTKEQAEADNLQHRQR 204
>gi|16271784|ref|NP_438121.1| hypothetical protein [Temperate phage PhiNIH1.1]
gi|21910790|ref|NP_665058.1| hypothetical protein SpyM3_1254 [Streptococcus pyogenes MGAS315]
gi|28876368|ref|NP_795553.1| hypothetical protein SpyM3_1254 [Streptococcus pyogenes phage
315.4]
gi|28895521|ref|NP_801871.1| conserved hypothetical protein (phage associated) [Streptococcus
pyogenes SSI-1]
gi|71903936|ref|YP_280739.1| DnaD-like protein [Streptococcus pyogenes MGAS6180]
gi|94990859|ref|YP_598959.1| DNA replication protein dnaD [Streptococcus pyogenes MGAS10270]
gi|16156176|gb|AAL15050.1| hypothetical protein-phage associated [temperate phage PhiNIH1.1]
gi|21904994|gb|AAM79861.1| conserved hypothetical protein - phage-associated [Streptococcus
pyogenes MGAS315]
gi|28810770|dbj|BAC63704.1| conserved hypothetical protein (phage associated) [Streptococcus
pyogenes SSI-1]
gi|71803031|gb|AAX72384.1| DnaD-like protein [Streptococcus pyogenes MGAS6180]
gi|94544367|gb|ABF34415.1| DNA replication protein dnaD [Streptococcus pyogenes MGAS10270]
Length = 137
Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 34/84 (40%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 127 KQLTDELEQA-LGILNPMVIEDLNKEIQEEHTDPELIREALKEAVFNRKTNWNYIKGVLR 185
K+L D + + +L+P IED+NK I EE E++ EALK + N Y+ VL
Sbjct: 12 KELFDNFQNNWMRLLSPFEIEDINKWIDEEKMPVEVVNEALKSTILYNAPNLRYLNRVLN 71
Query: 186 NWKLSGITTKIQVEERRLEHQGKK 209
NWK GI T +VE RL+ + KK
Sbjct: 72 NWKRQGIDTVEKVEFARLQFENKK 95
>gi|2385450|dbj|BAA22163.1| ORF1 [Streptococcus pyogenes]
Length = 136
Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 34/84 (40%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 127 KQLTDELEQA-LGILNPMVIEDLNKEIQEEHTDPELIREALKEAVFNRKTNWNYIKGVLR 185
K+L D + + +L+P IED+NK I EE E++ EALK + N Y+ VL
Sbjct: 11 KELFDNFQNNWMRLLSPFEIEDINKWIDEEKMPVEVVNEALKSTILYNAPNLRYLNRVLN 70
Query: 186 NWKLSGITTKIQVEERRLEHQGKK 209
NWK GI T +VE RL+ + KK
Sbjct: 71 NWKRQGIDTVEKVEFARLQFENKK 94
>gi|71911022|ref|YP_282572.1| DNA replication protein [Streptococcus pyogenes MGAS5005]
gi|71853804|gb|AAZ51827.1| DNA replication protein [Streptococcus pyogenes MGAS5005]
Length = 129
Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/71 (43%), Positives = 43/71 (60%)
Query: 139 ILNPMVIEDLNKEIQEEHTDPELIREALKEAVFNRKTNWNYIKGVLRNWKLSGITTKIQV 198
+L+P IED++K I E++ E++ EALKE V N Y+ VL NWK GI T +V
Sbjct: 17 LLSPFEIEDIDKWIDEDNMPVEVVNEALKETVIYNAPNLRYLNRVLNNWKRQGIDTVEKV 76
Query: 199 EERRLEHQGKK 209
E RL+ + KK
Sbjct: 77 EFARLQFENKK 87
>gi|116494968|ref|YP_806702.1| Putative primosome component related protein [Lactobacillus casei
ATCC 334]
gi|116105118|gb|ABJ70260.1| Putative primosome component related protein [Lactobacillus casei
ATCC 334]
Length = 207
Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 53/209 (25%), Positives = 90/209 (43%), Gaps = 7/209 (3%)
Query: 1 MSFFEQY-RTGNLVLPNALFFHFKDIFPSADDFLVWQFLYLQTTTQIGEVASSQIAQATG 59
M+ F+ Y G L N LF H+ + + +F+ + F+ + +A
Sbjct: 1 MTDFKTYLEAGQFSLSNLLFDHYATLGLTQTEFMTYLFIDQWQASHHQAPDLKVLAARMN 60
Query: 60 KTPTEVNKSITTLTEAGLLDFTTV-KVNNEIKMVVDASPALAVLDKLVSSENSTTGPVAG 118
P + +I TL + + +V + ++ D SP LA KL +S T P
Sbjct: 61 VAPNAIYSAIETLIQKQAIALESVPDGHGRMRDHYDLSPILA---KLPTSAGGTPTPATS 117
Query: 119 QPTNTQLIKQLTDELEQALG-ILNPMVIEDLNKEIQEEHTDPELIREALKEAVFNRKTNW 177
Q N + +++E G L+P+ E + + +H PE+I AL+EAV N +
Sbjct: 118 Q-ANVDAQTNVFNQIEIEFGRPLSPIEQETIRDWLTTDHYLPEVILLALREAVLNSAYSL 176
Query: 178 NYIKGVLRNWKLSGITTKIQVEERRLEHQ 206
Y+ +L NW+ + T QV+ HQ
Sbjct: 177 KYMDRILLNWERRNLKTPQQVQADIRRHQ 205
>gi|81428526|ref|YP_395526.1| DNA replication protein DnaD (Primosomal protein DnaD)
[Lactobacillus sakei subsp. sakei 23K]
gi|78610168|emb|CAI55217.1| DNA replication protein DnaD (Primosomal protein DnaD)
[Lactobacillus sakei subsp. sakei 23K]
Length = 207
Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 53/201 (26%), Positives = 99/201 (49%), Gaps = 12/201 (5%)
Query: 10 GNLVLPNALFFHFKDIFPSADDFLVWQFLYLQTTTQIGEVAS--SQIAQATGKTPTEVNK 67
G L + L H++ + S+D+ +V +L L G+ + I + G PT++ +
Sbjct: 11 GQLSVSRLLLQHYQTLRMSSDELVV--YLQLSDFASQGDTFPDLAVIGERMGLAPTQIYE 68
Query: 68 SITTLTEAGLLDFTTVKVNNEIKMV--VDASPALAVLDKLVSSENSTTGPVAGQPTNTQL 125
I L + ++ + VN + + V D +PAL+ L L +N + Q TN +L
Sbjct: 69 LIHQLLKKKIITLNST-VNEQGQPVDHYDLTPALSKLSVLAVQQNQAA--LNSQETNQRL 125
Query: 126 IKQLTDELEQALG-ILNPMVIEDLNKEIQEEHTDPELIREALKEAVFNRKTNWNYIKGVL 184
+ +++EQ G L+P+ E ++ + +H ELI+ A++EAV N+ + Y+ +L
Sbjct: 126 --SVFNQIEQTFGRPLSPLESEIISNWLDLDHYSAELIQLAVREAVLNQVYSLKYVDKIL 183
Query: 185 RNWKLSGITTKIQVEERRLEH 205
NW+ I TK ++ + H
Sbjct: 184 LNWQKQNIQTKEDLQAYQKAH 204
>gi|116333500|ref|YP_795027.1| Putative primosome component related protein [Lactobacillus brevis
ATCC 367]
gi|116098847|gb|ABJ63996.1| Putative primosome component related protein [Lactobacillus brevis
ATCC 367]
Length = 231
Score = 55.1 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 59/212 (27%), Positives = 100/212 (47%), Gaps = 10/212 (4%)
Query: 3 FFEQY-RTGNLVLPNALFFHFKDIFPSADDFLVWQFLYLQTTTQIGEVA--SSQIAQATG 59
F + Y + G L N L HF+++ + D LV +L L+ GE ++ IA G
Sbjct: 4 FIQHYVQAGQTSLANYLLDHFREVGMTTDQLLV--YLQLRRYMDRGEPLPDATVIASHLG 61
Query: 60 KTPTEVNKSITTLTEAGLLDFTTVKVNNEIKMVVDASPALAVLDKLVSSENSTTGPVAGQ 119
V + + + L+ TTV + K DA + +KL TT V Q
Sbjct: 62 WDKQRVYQLLHEMITQKLMVITTVTDSQGQKQ--DAYDFRLLTEKLSQLAVKTTQQVVKQ 119
Query: 120 PTNTQLIKQLTDELEQALG-ILNPMVIEDLNKEIQEEHTDPELIREALKEAVFNRKTNWN 178
T + + +++E G L+P+ +E + + + E+H PELI+ ALKEAV ++ +
Sbjct: 120 -TASNDRSAIFNQIETEFGRPLSPLEMESITQWLDEDHYRPELIQLALKEAVLSQAYSLK 178
Query: 179 YIKGVLRNWKLSGITTKIQVEERRLEHQGKKQ 210
Y+ +L +W+ + T QV +R E Q ++
Sbjct: 179 YMDRILLSWERKNLKTAAQV-QREKERQAPRR 209
>gi|139473496|ref|YP_001128212.1| hypothetical protein SpyM50641 [Streptococcus pyogenes str.
Manfredo]
gi|139474136|ref|YP_001128852.1| putative phage DNA replication protein [Streptococcus pyogenes str.
Manfredo]
gi|134271743|emb|CAM29976.1| hypothetical phage protein [Streptococcus pyogenes str. Manfredo]
gi|134272383|emb|CAM30639.1| putative phage DNA replication protein [Streptococcus pyogenes str.
Manfredo]
Length = 128
Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 127 KQLTDELEQALG-ILNPMVIEDLNKEIQEEHTDPELIREALKEAVFNRKTNWNYIKGVLR 185
K+L + + G +++P IED+ K I E++ E++ AL+EAV N K +W YI +L
Sbjct: 4 KKLFENFQLTFGRMISPFEIEDIQKWIHEDNMPIEVVNLALREAVENNKISWKYINKILV 63
Query: 186 NWKLSGITTKIQVEERRLEHQGKKQHHQVS 215
+W SG TT +V +R + K+ V+
Sbjct: 64 DWYKSGDTTVEKVRDRLQRFEDSKKQRSVT 93
>gi|90961667|ref|YP_535583.1| DNA replication protein dnaD [Lactobacillus salivarius subsp.
salivarius UCC118]
gi|90820861|gb|ABD99500.1| DNA replication protein dnaD [Lactobacillus salivarius subsp.
salivarius UCC118]
Length = 235
Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats.
Identities = 53/211 (25%), Positives = 99/211 (46%), Gaps = 10/211 (4%)
Query: 5 EQYRTGNLVLPNALFFHFKDIFPSADDFLVWQFLYLQTTTQIGEVASS--QIAQATGKTP 62
E R GN V+ N + ++K + + +F++ +L L + Q GE IA++ +
Sbjct: 7 EFLRQGNTVISNLVLKNYKKLGMTDTEFIL--YLQLNSYLQKGETFPELENIAKSLQISV 64
Query: 63 TEVNKSITTLTEAGLLDFTTVKVNNEIKMVVDASPALAV--LDKLVSSENSTTGPVAGQP 120
+V + L E +L T+ VN + + S LD L+ E V+ +
Sbjct: 65 NDVYTQLHNLIEKKILKIETI-VNQQGQKTDSYSFDFLYQKLDSLIDEEKKELLNVSAEK 123
Query: 121 TNTQLIKQLTDELEQALGILNPMVIEDLNKEIQEEHTDPELIREALKEAVFNRKTNWNYI 180
++ E + L +P+ +E +N I+E+ +LI AL+EAV ++ + YI
Sbjct: 124 DRQKIFNAFQVEFGRDL---SPIELETINDWIEEDKYKTDLILLALREAVLSQAYSLKYI 180
Query: 181 KGVLRNWKLSGITTKIQVEERRLEHQGKKQH 211
+L +W+ GI +K+ VE + + KK++
Sbjct: 181 DRILLSWEKQGIRSKVDVENLKKAREKKKEN 211
>gi|19745761|ref|NP_606897.1| hypothetical protein spyM18_0726 [Streptococcus pyogenes MGAS8232]
gi|19746437|ref|NP_607573.1| hypothetical protein spyM18_1500 [Streptococcus pyogenes MGAS8232]
gi|21910675|ref|NP_664943.1| hypothetical protein SpyM3_1139 [Streptococcus pyogenes MGAS315]
gi|28876309|ref|NP_795495.1| hypothetical protein SpyM3_1139 [Streptococcus pyogenes phage
315.3]
gi|28895636|ref|NP_801986.1| conserved hypothetical protein (phage associated) [Streptococcus
pyogenes SSI-1]
gi|94994717|ref|YP_602815.1| DNA replication protein dnaD [Streptococcus pyogenes MGAS10750]
gi|19747902|gb|AAL97396.1| conserved hypothetical phage protein [Streptococcus pyogenes
MGAS8232]
gi|19748638|gb|AAL98072.1| conserved hypothetical phage protein [Streptococcus pyogenes
MGAS8232]
gi|21904877|gb|AAM79746.1| hypothetical protein - phage-associated [Streptococcus pyogenes
MGAS315]
gi|28810885|dbj|BAC63819.1| conserved hypothetical protein (phage associated) [Streptococcus
pyogenes SSI-1]
gi|94548225|gb|ABF38271.1| DNA replication protein dnaD [Streptococcus pyogenes MGAS10750]
Length = 128
Score = 53.9 bits (128), Expect = 8e-06, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 127 KQLTDELEQALG-ILNPMVIEDLNKEIQEEHTDPELIREALKEAVFNRKTNWNYIKGVLR 185
K+L + + G +++P IED+ K I E++ E++ AL+EAV N K +W YI +L
Sbjct: 4 KKLFENFQLTFGRMISPFEIEDIQKWIHEDNMPIEVVNLALREAVENNKISWKYINKILV 63
Query: 186 NWKLSGITTKIQVEERRLEHQGKKQHHQVS 215
+W SG TT +V +R K+ V+
Sbjct: 64 DWYKSGDTTVEKVRDRLQRFDDSKKQRSVT 93
>gi|15674969|ref|NP_269143.1| hypothetical protein SPy_0953 [Streptococcus phage 370.3]
gi|15675387|ref|NP_269561.1| hypothetical protein SPy_1482 [Streptococcus pyogenes M1 GAS]
gi|50914587|ref|YP_060559.1| DNA replication protein dnaD [Streptococcus pyogenes MGAS10394]
gi|94988437|ref|YP_596538.1| DNA replication protein [Bacteriophage 9429.2]
gi|13622115|gb|AAK33864.1| conserved hypothetical protein - phage associated [Streptococcus
phage 370.3]
gi|13622572|gb|AAK34282.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS]
gi|50903661|gb|AAT87376.1| DNA replication protein dnaD [Streptococcus pyogenes MGAS10394]
gi|94541945|gb|ABF31994.1| DNA replication protein [Bacteriophage 9429.2]
Length = 128
Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 127 KQLTDELEQALG-ILNPMVIEDLNKEIQEEHTDPELIREALKEAVFNRKTNWNYIKGVLR 185
K+L + + G +++P IED+ K I E++ E++ AL+EAV N K +W YI +L
Sbjct: 4 KKLFENFQLTFGRMISPFEIEDIQKWIHEDNMPIEVVNLALREAVENNKISWKYINKILV 63
Query: 186 NWKLSGITTKIQVEERRLEHQGKKQHHQVS 215
+W SG TT +V +R K+ V+
Sbjct: 64 DWYKSGDTTVEKVRDRLQRFDDSKKQRSVT 93
>gi|116492695|ref|YP_804430.1| Putative primosome component related protein [Pediococcus
pentosaceus ATCC 25745]
gi|116102845|gb|ABJ67988.1| Putative primosome component related protein [Pediococcus
pentosaceus ATCC 25745]
Length = 234
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 55/204 (26%), Positives = 93/204 (45%), Gaps = 15/204 (7%)
Query: 1 MSFFEQYRTGNLVLPNALFFHFKDIFPSADDFLVWQFLYLQTTTQIGEVAS----SQIAQ 56
+SF E G++ + N L ++ + + D+FL LYLQ + S ++A
Sbjct: 6 LSFLED---GSISIANFLLDNYAKLGMTNDEFL----LYLQIKKEQSRGNSFPQMDKLAD 58
Query: 57 ATGKTPTEVNKSITTLTEAGLLDFTTVKVNN-EIKMVVDASPALAVLDKLVSSENSTTGP 115
+ G T + +I L + +L+ K + + D S + L ++ T
Sbjct: 59 SLGMTSQNLFSTIQALQDKKILEIKQRKDDQGRLTDFYDFSLLYQKMIALFDNKVEETEK 118
Query: 116 VAGQPTNTQLIKQLTDELEQALGILNPMVIEDLNKEIQEEHTDPELIREALKEAVFNRKT 175
VA + Q+ E + L +P+ IE +++ I +H +LIR ALKEAV N+
Sbjct: 119 VATAKQENNIYDQIQIEFGRPL---SPIEIETISQWIDTDHFSYDLIRLALKEAVLNQAY 175
Query: 176 NWNYIKGVLRNWKLSGITTKIQVE 199
N Y+ +L NW+ +TT QVE
Sbjct: 176 NLKYMDRILLNWQQRHLTTPAQVE 199
>gi|116873330|ref|YP_850111.1| DNA replication protein [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|116742208|emb|CAK21332.1| dnaD [Listeria welshimeri serovar 6b str. SLCC5334]
Length = 239
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/55 (47%), Positives = 38/55 (69%)
Query: 140 LNPMVIEDLNKEIQEEHTDPELIREALKEAVFNRKTNWNYIKGVLRNWKLSGITT 194
L+PM E L+ + ++HT P+LI+EALKEAV ++K N+ YI +L NW G+ T
Sbjct: 141 LSPMEAEMLSAWLDQDHTSPDLIKEALKEAVISQKLNFRYIDRILLNWSKQGVKT 195
Database: nr
Posted date: Sep 17, 2007 11:41 AM
Number of letters in database: 999,999,834
Number of sequences in database: 2,976,859
Database: /nucleus1/users/jsaw/ncbi/db/nr.01
Posted date: Sep 17, 2007 11:48 AM
Number of letters in database: 894,087,890
Number of sequences in database: 2,493,262
Lambda K H
0.315 0.131 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 835,372,558
Number of Sequences: 5470121
Number of extensions: 32604187
Number of successful extensions: 113712
Number of sequences better than 1.0e-05: 71
Number of HSP's better than 0.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 113633
Number of HSP's gapped (non-prelim): 72
length of query: 232
length of database: 1,894,087,724
effective HSP length: 128
effective length of query: 104
effective length of database: 1,193,912,236
effective search space: 124166872544
effective search space used: 124166872544
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 127 (53.5 bits)