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BUILD 129
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Reference SNP(refSNP) Cluster Report: rs11457342          
refSNP ID: rs11457342
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:120/129
Map to Genome Build:36.3
Allele
Variation Class:DIP:
deletion/insertion polymorphism
RefSNP Alleles:-/A
Ancestral Allele:Not available
Clinical Association:unknown
HGVS Names
NM_000842.1:c.911+29522_911+29523insT
NT_008984.17:g.815173_815174insA
Links

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss15346549 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs11457342 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss15346549DEVINE_LAB|INDEL_GP34_WGS_497264fwd/B-/Aaacagagcaaaactccatctcaaaaaaaaaaaaaaaaaaagccaatataatcagtaatat11/13/0311/22/03120Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs11457342|allelePos=401|totalLen=801|taxid=9606|snpclass=2|alleles='-/A'|mol=Genomic|build=120
 CCTTATGACC TAATCACCTC TTAAAGTCCT CCCTCTCAAC ACTGTTGTAC TGGGGATTAA
 GTTTCCCACA CATGAACTTT GGGGGACATA TTCAAATCAT AGCAGATTAA TTTTTAAAAA
 TAAGCCAGTG TACATGCCTG TAATCCCAGC ACTTTGGGAG GCCAAGGCAG GCAGATCATG
 AGGACAGGAG ATCGAGACCA TTCTGGGTAA CACAGTGAAA CCCCATCTCT ACTAAAAAAT
 ACAAAAAAAA AAAAATTAGC TGGGCTTGGT GGCGCACACC TGTAATCCAA GCTACTCAGG
 AGAATGGTGT GAACCCGGGA GGCAGAACTT GCAGTGAGCT GAGATGGCAT CACAGCACTC
 CAGCCTGGGC AACAGAGCAA AACTCCATCT CAAAAAAAAA
 N
 AAAAAAAAAA GCCAATATAA TCAGTAATAT CAGTAATATT ATTTTTCCAT TATTGCTATT
 CTTTCTCGAG CCCTGTACCT TTTGAAATAA GGTGTTCACT GGTTTGCTGG TCTTTGCAGA
 GAAGTATTAG ATAAAAGCAC TTTATAATTT GAAAAACTAT GATGAACCTG GCTTTTACAG
 TTATTAACCC TGCAATCTTG GGCAAATAGC TTTGCCTCTC AGAGCACTGA ATTGCTAACT
 GATAGAAATG CAGAAAACAT TTTTTAATTT GTTAATTTGT GATGAAAATT AAAGGAAATA
 ATGTATACAA AATATTTCGT AAATGTCTAA CTCCAAATGT TACCTCTCTA TGTCTTGTTT
 TGTTATCATC TCACTTTCCT CTGTGAAACA GAATGAAGTA

  GeneView back to top
GeneView via analysis of contig annotation: GRM5 glutamate receptor, metabotropic 5
View variations for gene:
Include clinically associated: in gene region cSNP has frequency double hit
Group
Label		Contig->mRNAGene Model (contig mRNA transcript) Color Legend
referenceNT_008984->NM_000842
function
"
Group
label		Contig-->mRNA-->ProteinContig
position		mRNA
orientation		mRNA
pos		FunctiondbSNP
allele		Protein
residue		Codon
pos		Amino acid
pos
referenceNT_008984->NM_000842->NP_000833815173:815174reverseintron

GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  rs11457342 maps exactly once on NCBI human chromosome 11
ChromosomeContig
accession		Contig
position		Chromosome
position		Hit
orientation		Contig
Allele		Assembly
Type		Group
label		Contig
label		Neighbor
SNP		SNP_flank
position
11NW_001838029.2961772^96177384792507^84792508minus-alt_assembly_8HuRefHuRefview400..400
11NW_925129.196502986078377minusTalt_assembly_1CeleraCeleraview400
11NT_008984.17815173^81517488193199^88193200plus-ref_assemblyreferencereferenceview400..400

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_008984
dbSNP Blast Analysis
GenBank HTGS Finished:
AP006214.1

  Population Diversity back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation		PCR results confirmed
in multiple reactions		Homozygotes detected
in individual genotype data
UNKNOWNUNKNOWNUNKNOWN

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Revised: May 25, 2006 1:38 PM .