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BUILD 129
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Reference SNP(refSNP) Cluster Report: rs32542916          
refSNP ID: rs32542916
Organism:mouse (Mus musculus)
Molecule Type:Genomic
Created/Updated in build:125/128
Map to Genome Build:37.1
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:A/G
Strain:not submitted
Ancestral Allele:Not available
Clinical Association:unknown
HGVS Names
Links

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss46157681 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs32542916 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss46157681ABI|mCV25278330byFreqfwd/TA/Gtcaactgaatataatgctcaactgaatcctgatgacccatgccaacgtaaaaaggacaac07/20/0512/22/05125Genomicunknown
ss59908669ENSEMBL|NT_110169.2_96291fwd/TA/Gtcaactgaatataatgctcaactgaatcctgatgacccatgccaacgtaaaaaggacaac06/13/0606/13/06127Genomicunknown
ss61077507PERLEGEN|NES16048290fwd/TA/Gtcaactgaatataatgctcaactgaatcctgatgacccatgccaacgtaaaaaggacaac06/22/0606/22/06127Genomic100 %

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs32542916|allelePos=301|totalLen=601|taxid=10090|snpclass=1|alleles='A/G'|mol=Genomic|build=127
 CTCTGGGCCA ACATGAACCC CCAAAGGAAT CAATTGTGAA CCAAGAACAT GCTCCACAGG
 TATGCCTACA GGCCAGTCTG GTCTGGAAAA CTCTTCAATT AGGATTCTCT TTCCATGTGA
 TTCTGGATTG TGTTGAAAAT TAAAATGGGG GGCGGGGGGG GGGGGCGGGT AATAATCGGC
 TACTGCTTAC ATGGCTCTTA TCCACATAAG CAGAGGACTC TTGCTGAGTT TGAAAGGTGG
 GGAGTCAGCA GATAACTACA TATTGAAGAC TCAACTGAAT ATAATGCTCA ACTGAATCCT
 R
 GATGACCCAT GCCAACGTAA AAAGGACAAC TAATCAGCCA CTTTTGAACA AAGGGATGGA
 ATTGTTTATG TGTGTGTATG TATACATGTG TATGCATGTC CATGTATGTG CAGGTGTGAT
 GGCTAATCTT GGTCAGCAAC TTGACACACC TGGGAAGAGA GAATCTTAAT TGAAAAGGTT
 CCTCCATCAG ATCGGCCTGT GGTCATGTCT GTGAAGCATT TTTTTTTTTT TGGTTGCTGA
 TTGACATAGG AAGGTCCCAG CCTACAGTGG ACAGTGCCAT GCCTGGGTAG GTAGCCCTGG

  GeneView back to top
GeneView via analysis of contig annotation: Insr insulin receptor
View variations for gene:
Include clinically associated: in gene region cSNP has frequency double hit
Group
Label		Contig->mRNAGene Model (contig mRNA transcript) Color Legend
CeleraNW_001030882->NM_010568
function
C57BL/6JNT_039455->NM_010568
function
"
Group
label		Contig-->mRNA-->ProteinContig
position		mRNA
orientation		mRNA
pos		FunctiondbSNP
allele		Protein
residue		Codon
pos		Amino acid
pos
CeleraNW_001030882->NM_010568->NP_034698122278reverseintron
C57BL/6JNT_039455->NM_010568->NP_034698195685reverseintron

GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  rs32542916 maps exactly once on NCBI mouse chromosome 8
ChromosomeContig
accession		Contig
position		Chromosome
position		Hit
orientation		Contig
Allele		Assembly
Type		Group
label		Contig
label		Neighbor
SNP		SNP_flank
position
8NT_039455.71956853195685plusGref_strainC57BL/6JC57BL/6Jview300
8NW_001030882.11222783421654plusGalt_assembly_1CeleraCeleraview300

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_110169.2
dbSNP Blast Analysis
GenBank HTGS Finished:GenBank HTGS Draft:
AC168068.3 AC087150.1 AC087153.1

  Population Diversity back to top

Sample AscertainmentGenotype Detailnew.gifAlleles
ss#PopulationIndividual
Group		Chrom.
Sample Cnt.
SourceA/A
G/G
ss46157681CRAMUS_MOUSE 6IG 1 2
ss61077507MM_PANEL2 4IG 1 1

SummaryAverage
Het.+/- std err:		Individual
Count		Founders
Count		Individual
Overlap		Genotype
Conflict
-1.000+/-0171710

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation		PCR results confirmed
in multiple reactions		Homozygotes detected
in individual genotype data
byFreqUNKNOWNUNKNOWNUNKNOWN

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Revised: May 25, 2006 1:38 PM .