NCBI

NLM

PubMed Nucleotide Protein Genome Structure PopSet Taxonomy OMIM Books SNP
Search for SNP on NCBI Reference Assembly
Spacer gif
BUILD 129
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Reference SNP(refSNP) Cluster Report: rs11034546          
refSNP ID: rs11034546
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:120/129
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:A/G
Ancestral Allele:G
Clinical Association:unknown
HGVS Names
Links , Linkout

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss18479112 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs11034546 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss16114113SC_SNP|NT_009237.16_3676482fwd/TA/Gagcttttattcatgacagaaggtgaagtagaacaggcatgtcacatggcaaaaacaaagt11/18/0311/22/03120Genomicunknown
ss18479112SC_SNP|SC-CHR9-12_NA11321-200402.chr11.NT_009237.16_3676482byFreqfwd/TA/Gagcttttattcatgacagaaggtgaagtagaacaggcatgtcacatggcaaaaacaaagt02/20/0410/26/06120Genomicunknown
ss78808023HGSV|Cor18507_SNV_20070510.chr11_4869118fwd/TA/Gagcttttattcatgacagaaggtgaagtagaacaggcatgtcacatggcaaaaacaaagt10/19/0710/20/07129Genomicunknown
ss84957352HGSV|Cor18517_SNV_20070510.chr11_4869118fwd/TA/Gagcttttattcatgacagaaggtgaagtagaacaggcatgtcacatggcaaaaacaaagt12/06/0712/08/07130Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs11034546|allelePos=421|totalLen=847|taxid=9606|snpclass=1|alleles='A/G'|mol=Genomic|build=130
 AGGCTTTACC TTACCCCATT TCAATGACAA ATTGTATAGA GTCAGAATGG ACTATAGGAC
 CCCCTTCCCT GATCTGGAAT GAACTCAGaa taataataat aataataata ataataataa
 taataataat aataaAAGTA AAAGGACTGG GAAACCCCAG GAAGTGGATA CTAGTTTTGA
 AGAATGAAGA AAATTAGTGG TTTCTCCAAT TTCTAGTCAT TTGTTGCAAA CATTTGTTCA
 GGCAAGGtgt gacaggctgt tctcccattg ctataagaaa tgcctgaagc tgggtaattt
 acaaagaaaa gaggtttaat tggatcgtgg ttctgcaggc tcttctagca tggcactgcc
 atctggttgg gctctgggga ggcctcaggg agcttttatt catgacagaa ggtgaagtag
 R
 aacaggcatg tcacatggca aaaacaaagt gagaggggga agggaggtac catatacttt
 tcaaccatca gattttgtga gatcccactc actatcaaga ggacagtacc aagccatgag
 ggatctgtcc ccatgaccta aacacctccc accaaccccc atctccaaca ttgggaattt
 tatttaaaca tgagatttgg ttggaacaaa tatccacacc atatcaCCAG GCTCTGAGCT
 TCTAAAGCTG TTTTTACCCA CAAGCTCTTC AAAGGAAGCA GTCCAAAGTA AGGACATAAC
 AAATGCCATG TATGATTGAC TATTAACCCT CTCCTATAGC ATAGTGAAAA CCCCACCTTT
 TTGTATGATA ATGATTACAA TGTCCTTATG TATGACCAAT TCATAATGGT GCTCTCCATC
 TTTGAG

  GeneView back to top
GeneView: no link established by analysis of contig annotation
GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  rs11034546 maps exactly once on NCBI human chromosome 11
ChromosomeContig
accession		Contig
position		Chromosome
position		Hit
orientation		Contig
Allele		Assembly
Type		Group
label		Contig
label		Neighbor
SNP		SNP_flank
position
11NW_001838021.15405454571170plusAalt_assembly_8HuRefHuRefview420
11NT_009237.1736997834869118plusAref_assemblyreferencereferenceview420
11NW_925006.15366655036341plusAalt_assembly_1CeleraCeleraview420

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_009237
dbSNP Blast Analysis

  Population Diversity back to top

Sample AscertainmentGenotype Detailnew.gifAlleles
ss#PopulationIndividual
Group		Chrom.
Sample Cnt.
SourceA/A
A/G
G/G
HWPA
G
ss18479112HapMap-CEUEuropean 120IG 0.850 0.133 0.017 0.343 0.917 0.083
HapMap-HCBAsian 90IG 0.178 0.578 0.244 0.294 0.467 0.533
HapMap-JPTAsian 90IG 0.133 0.467 0.400 1.000 0.367 0.633
HapMap-YRISub-Saharan African 120IG 0.683 0.283 0.033 1.000 0.825 0.175

SummaryAverage
Het.+/- std err:		Individual
Count		Founders
Count		Individual
Overlap		Genotype
Conflict
0.438+/-0.16527021000

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation		PCR results confirmed
in multiple reactions		Homozygotes detected
in individual genotype data
byFreqwith2hitwithHapMapFreq
DoubleHit found by:  BCM_SSAHASNP
UNKNOWNUNKNOWNUNKNOWN

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
HAPLOTYPE:Submission | Specifications | Sample HapSet | Sample Individual
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement

Revised: May 25, 2006 1:38 PM .