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Sample GSM38624 Query DataSets for GSM38624
Status Public on May 01, 2005
Title sitter_mutants_2
Sample type RNA
 
Channel 1
Source Name Untreated sitter third instar larvae
Organism(s) Drosophila melanogaster
Extracted molecule total RNA
 
Channel 2
Source Name Untreated DGCalpha1[3] sitter third instar larvae
Organism(s) Drosophila melanogaster
Extracted molecule total RNA
 
 
Description Array Number: 12906624
Total RNA was extracted from Drosophila third instar larvae using Trizol Reagent (Invitrogen). Please refer to Osborne et al. 1997 (PMID: 9242616) for information on the fly strains. 80ug of RNA, quantified by A260 using a NanoDrop spectrophotometer (NanoDrop Technologies, Wilmington, DE), was used in each direct labeling reaction (see <http://www.flyarrays.com>) to generate fluorescently labeled cDNA. The respective Cy3 and Cy5 targets were suspended in 75 uL DIG EasyHyb solution (Roche, Mississauga, ON) and were competitively hybridized to the array for 17.75 hours in a CMT-GAPS hybridization chamber (Corning, Acton, MA). Scanning was performed with a ScanArray 4000 system (Perkin Elmer, Boston, MA) using the following settings: 10uM scan: Cy3(543 nm) 100-74, Cy5(633 nm) 100-64 (laser power-PMT Gain). Quantification was performed using QuantArray v3 software (Perkin Elmer) using the adaptive algorithm without background subtraction. The data in the file is not normalized. The ratio in the Value column was derived from normalized data (not shown) as discussed in the manuscript.
Keywords = Drosophila
Keywords = foraging
Keywords = behavior
Keywords = cGMP
Keywords = guanylyl cyclase
Keywords = genetic background
Lot batch = D12K_300404
 
Submission date Jan 07, 2005
Contact name Zak Razak
E-mail(s) z.razak@utoronto.ca
Phone 905-569-4664
URL http://www.flyarrays.com
Organization name University of Toronto
Department Zoology Department
Lab Canadian Drosophila Microarray Centre
Street address 3359 Mississauga Road
City Mississauga
State/province ON
ZIP/Postal code L5L 1C6
Country Canada
 
Platform ID GPL1467
Series (1)
GSE2136 Effects of mutation in a soluble guanylyl cyclase gene

Data table header descriptions
ID_REF
CH1_RAW Raw fluorescence intensity - Cy3
CH1_BKD_RAW Raw background fluorescence intensity - Cy3
CH1_AREA Spot area - Cy3
Ch1_Signal_Noise_Ratio Signal to noise ratio - Cy3
CH2_RAW Raw fluorescence intensity - Cy5
CH2_BKD_RAW Raw background fluorescence intensity - Cy5
CH2_AREA Spot area - Cy5
Ch2_Signal_Noise_Ratio Signal to noise ratio - Cy5
Ignore Quality measure exported from GeneTraffic; flag=1, good=0
Ratio The ratio of CH2_Raw to CH1_Raw
VALUE The log2-transformed ratio of the Lowess-normalized fluorescence values (Ch2/Ch1) exported from GeneTraffic

Data table
ID_REF CH1_RAW CH1_BKD_RAW CH1_AREA Ch1_Signal_Noise_Ratio CH2_RAW CH2_BKD_RAW CH2_AREA Ch2_Signal_Noise_Ratio Ignore Ratio VALUE
1 1091.881592 15.25 15200 18.454735 1050.542236 1.5 14200 155.929101 0.962139342 -0.023688199
2 1020.184937 11.5 14600 31.16644 1071.503174 4.541667 15500 48.158457 1.050302877 0.100102705
3 3604.541748 17.583334 14400 55.168856 4478.895508 2.458333 16300 371.8986 1.242570019 0.308282398
4 3667.589111 32.291668 14600 45.07918 4282.438965 3.875 16400 314.054126 1.167644149 0.217371593
5 688.697266 41.583332 10900 4.411803 546.346802 8.916667 12400 17.654936 0.793304735 -0.144368767
6 597.435486 16.583334 12400 8.611941 522.129028 1.958333 12400 73.617809 0.873950477 0.028053993
7 760.378662 24.458334 10300 8.25397 750.588257 17.583334 10200 9.45568 0.987124303 0.070095996
8 1110.582031 58.416668 13400 5.196973 1256.575195 12.583333 15300 34.480726 1.131456443 0.222017893
9 1027.601685 46.375 12300 8.279813 981.469727 2.625 13200 91.270539 0.95510716 -0.034439824
10 890.718994 55.791668 12100 4.755202 985.534912 4.708333 12900 42.726684 1.106448744 0.192777555
11 1408.367676 54.666668 13600 12.167483 1370.431641 1.916667 13900 167.054899 0.973063827 -0.002587702
12 1352.215332 34.833332 13000 13.628475 1521.984985 6.625 13300 46.894173 1.125549274 0.208604272
13 1985.876953 26.5 13000 23.806852 1716.678833 0.708333 13700 494.704383 0.864443706 -0.134421072
14 2013.906006 76.75 14900 12.854261 1631.856201 11.458333 15300 39.636172 0.810294123 -0.226189774
15 10545.99414 31.416666 16700 93.859596 9789.519531 7.666667 17900 260.644873 0.928269009 0.042711936
16 11762.43066 47.041668 15800 77.306837 10363.80273 0 17200 3.40E+38 0.88109363 -0.017301672
17 734.036743 5.25 13600 31.256838 773.169373 13.75 12400 14.499333 1.053311541 0.164528919
18 655.578552 9.791667 14000 22.202928 728.103699 7.041667 13500 21.106303 1.110627699 0.28297242
19 2493.41626 22.208334 16100 36.534846 2987.487061 0 15400 3.40E+38 1.198150148 0.249987535
20 2917.952393 2.5 14700 259.862211 3091.961182 0.541667 15500 1165.188836 1.059633868 0.061795694

Total number of rows: 27648

Table truncated, full table size 2650 Kbytes.




Supplementary file Size Download File type/resource
GSM38624_Cy3.Tif.gz 7.1 Mb (ftp)(http) TIFF
GSM38624_Cy5.Tif.gz 5.7 Mb (ftp)(http) TIFF
Raw data provided as supplementary file

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