NCBI

NLM

PubMed Nucleotide Protein Genome Structure PopSet Taxonomy OMIM Books SNP
Search for SNP on NCBI Reference Assembly
Spacer gif
BUILD 129
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Reference SNP(refSNP) Cluster Report: rs35135194          
refSNP ID: rs35135194
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:126/129
Map to Genome Build:36.3
Allele
Variation Class:DIP:
deletion/insertion polymorphism
RefSNP Alleles:-/C
Ancestral Allele:Not available
Clinical Association:unknown
HGVS Names
Links

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss40665317 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs35135194 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss40665317ABI|hCV34521131fwd/-/Cccactcatgggatgtgagtgaggcctccccttggcagcaggccaggactgggggggtccc07/17/0507/17/05126Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs35135194|allelePos=301|totalLen=601|taxid=9606|snpclass=2|alleles='-/C'|mol=Genomic|build=126
 CTGGGTCTGC TGGTGACCCT CATGATGAGA TGCCACTCAT GCTTGTGGCA GCAGCAGAGG
 GCACCACCCA GGGTGGCACA CAGAGCCCAC CTGTTCATCC CAGTGATGCC AACGTGACTA
 CTTGGTCGAG GTCTTGTCTG CAGGATTTTC CGCTGCAAAG CTACATTCCC TTGTCATTAA
 TTTGTCCACA GAAATGGGAC CATGTTGACG CTCCATCCCT CACTGCCCTC ATCCACTGCA
 CGCTGTGTCC ACCAAGGTGA TTGGCTCTGT CCACTCATGG GATGTGAGTG AGGCCTCCCC
 N
 TTGGCAGCAG GCCAGGACTG GGGGGGTCCC TGAGTAGCTG AAACTTGTAG GTGCTCCCTG
 GGCACAGGGC TTCAGGGGCC AAGGCTTGTC TGCCCCACTG GGCAACTGTC CACCCCCTTA
 GCAGGACTTT GAGGACATCC CGGCGGCTGC TGGGCTCCCC GGGGGCAGGG TGGACACCCC
 AAACTGCTCC CTTTGTCTCC CAAGCCCCTC ACTTGGACAG AGGCTCCGCT TAGTGTCCTG
 GCCCGTCTCT GCCATGGCCA TTGAGTGTGG GGTGTGGCAG AAGGGGGCTG TCAGGGTCTC

  GeneView back to top
GeneView: no link established by analysis of contig annotation
GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  rs35135194 maps exactly once on NCBI human chromosome 16
ChromosomeContig
accession		Contig
position		Chromosome
position		Hit
orientation		Contig
Allele		Assembly
Type		Group
label		Contig
label		Neighbor
SNP		SNP_flank
position
16NW_001838339.22065438^2065439558579^558580minus-alt_assembly_8HuRefHuRefview300..300
16NT_037887.4576774^576775576774^576775plus-ref_assemblyreferencereferenceview300..300
16NW_926018.1553201^553202837551^837552plus-alt_assembly_1CeleraCeleraview300..300

  NCBI Resource Links back to top
Submitter-Referenced
dbSNP Blast Analysis
GenBank HTGS Finished:
Z98883.5

  Population Diversity back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation		PCR results confirmed
in multiple reactions		Homozygotes detected
in individual genotype data
UNKNOWNUNKNOWNUNKNOWN

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
HAPLOTYPE:Submission | Specifications | Sample HapSet | Sample Individual
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement

Revised: May 25, 2006 1:38 PM .