Genome Analysis Pipeline Output
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Grailexp Exons
[TOP]
Format
Line ID (Identifier for the Exon)|Strand|Frame|Begin (Start BP in the Sequence)|End (Ending BP in the Sequence)|Begin ORF (Start of Open Reading Frame)|End ORF (End of Open Reading Frame)|Score
Full Documentation
[p][b]exon_grailexp=1|f|0|27006|27117|27001|27117|0.83
[p][b]exon_grailexp=2|f|1|40436|40468|40430|40591|0.56
[p][b]exon_grailexp=3|f|1|61742|61819|61742|61819|0.76
[p][b]exon_grailexp=4|f|1|67988|68089|67958|68101|0.8
[p][b]exon_grailexp=5|f|2|81048|81083|80949|81107|0.5
[p][b]exon_grailexp=6|f|1|91525|91655|91496|91864|0.75
[p][b]exon_grailexp=7|f|1|98606|98696|98534|98731|0.54
[p][b]exon_grailexp=8|f|0|101651|101695|101632|101706|0.96
[p][b]exon_grailexp=9|f|1|103802|103934|103769|103978|0.77
[p][b]exon_grailexp=10|f|0|122740|122784|122740|122784|0.59
[p][b]exon_grailexp=11|f|0|136267|136521|136255|136545|0.47
[p][b]exon_grailexp=12|f|0|138900|138986|138871|138990|0.56
[p][b]exon_grailexp=13|f|2|140589|140636|140544|140636|0.73
[p][b]exon_grailexp=14|f|1|140805|140980|140759|140980|0.88
[p][b]exon_grailexp=15|f|0|144565|144674|144541|144678|0.69
[p][b]exon_grailexp=16|f|1|147637|147774|147530|147871|0.85
[p][b]exon_grailexp=17|f|2|155932|156011|155829|156011|0.61
[p][b]exon_grailexp=18|f|1|185537|185683|185495|185683|0.48
[p][b]exon_grailexp=19|f|0|188665|188765|188665|188769|0.49
[p][b]exon_grailexp=20|f|0|189289|189337|189283|189363|0.6
[p][b]exon_grailexp=21|r|2|1737|1841|1698|1841|0.83
[p][b]exon_grailexp=22|r|2|10562|10632|10542|10679|0.59
[p][b]exon_grailexp=23|r|1|12453|12625|12164|12625|0.45
[p][b]exon_grailexp=24|r|2|20604|20708|20547|20735|0.72
[p][b]exon_grailexp=25|r|2|22441|22544|22407|22544|0.81
[p][b]exon_grailexp=26|r|0|34972|35175|34969|35175|0.68
[p][b]exon_grailexp=27|r|1|59830|59974|59756|60004|0.82
[p][b]exon_grailexp=28|r|0|66935|66993|66892|67008|0.65
[p][b]exon_grailexp=29|r|1|144668|144797|144614|144847|0.58
[p][b]exon_grailexp=30|r|2|146598|146715|146562|146723|0.55
[p][b]exon_grailexp=31|r|2|157829|158048|157800|158048|0.52
[p][b]exon_grailexp=32|r|1|173115|173215|173054|173215|0.83
[p][b]exon_grailexp=33|r|2|175191|175256|175188|175340|0.74
[p][b]exon_grailexp=34|r|1|178124|178249|178124|178249|0.55
[p][b]exon_grailexp=35|r|1|178445|178652|178421|178666|0.88
[p][b]exon_grailexp=36|r|1|181305|181417|181268|181537|0.79
[p][b]exon_grailexp=37|r|0|190978|191044|190951|191208|0.46
Exon Proteins
[TOP]
1 -SKVKGNDKVGIDRRHNQKALGLNLTKNTYEGHQVVT*
2 MVPLHSSLVNR
3 KAAECSEEELETDKTVDIRNNSGMG*
4 MNPNSLFPAVACSMGRNENNKYNSVGYIACKMEQ
5 MKILAEIALRMY
6 -DTTSLTPGLHRFRMRAFAAPPVGTDCLLDSSTAFSAIFASLLK-
7 MKKNGGSLWNLWNSIKRTNNHIVDMPEKRE-
8 -KDTSQDINLPINFL-
9 MIFTCQPFQRFWVSLKCLPSLKISIFVFSGSHDSIPKYHQCLET-
10 ADMAISDGKGKSFD*
11 MPVSICSADGLCIFVPSSAESLPRSGCLHALPWLLPSFLTNLFTFSCDTSSAPDGGKMTWSYYSLVSCYLQKKGPLLGVADTGVQ
12 -VFTANEQLEALLEVNKLIFRGGRLCCTL-
13 QVIMKLMNDIRVNTA*
14 -PELALKENKSPVRMKRDELNSKARADCGMGDFIGSLIYLFCTVVPTEDRMKGHSCVR*
15 MNVEPISLANHILIFTNRSASYTKMFSFLMAAFEVI-
16 -FLSVGRMAYPSSLAEHFEFDRSSTYVGLSLAYFVQKALMNKKEDS-
17 -VLAQSCKHYTNDKSKINGDNIGMQT*
18 MFTPEPLITILNNNNKIANCDLLTDLWFPVIANVLSVEGRRSFSQVHH*
19 MQGVGELRLSVDSKSSRCKQEQLVLRKFLHKWI-
20 MEASTVKTLTALPGYH-
21 AYIENHEEKDVIGNAEHIYLPMEYFYHITHKKHT*
22 -ILIEKDDVHLLQGVEIALQGYAE-
23 -GVMAAAAPNGPPLPLTTQPKETGKAPVTNPKKMKTYKLRQIKITSLKKLNELQDHN*
24 MRVGAYPKKHNNVLKDKEMGQNMVYSHFGVAHKEN
25 -YGKHLQKKFPNTVQKELHFKNVQVQWDDMGRYS*
26 KEEIKGRVPAFALPVRESTSHEPDFPSAPYDSIVTVKDIVIYSIYYIWIMKQVVYAVKYNSENASGL*
27 -TDDSKGYSVGQLLLNALKIQGKKRIHSEVKLSVQGMVRKSKNVYSSED
28 -PHGWKAIRKLTIMVEDEGE
29 MSENSVSSPKPNICKGKNDERFSKRECRSWVTSYLEKSIHLSK-
30 MFLLFLSLKAQEIAGTGIQHLTNLGIDDYTDTKKNSSSQ-
31 -LLEAAGCAGDAGKQISIWNLIGKSGRGMGWQEEGEKKAAKSTKQHFYFQRKQNSLARLKMTTKFYCQLISTM*
32 -REDIVNTLMMMDGFTHYVQGYPSKEQNVSIAG*
33 MVLPRKSSQYHGEDVNVKPPCK
34 EVNEGCNSARGRTKKEEIRECSKEMIQLRRAMKDSPRITAV*
35 MEDKELKKNKENHCALHGALENNKYPVRSRKLFHFQVIIKLLTKKRRQLWLKNGIKDCVDKQVNKIWKV-
36 -QELDKWEDTFIRRNKVIQELLSSDKSSSGRVYFTGSG
37 MEQNKRKATWYKETSPAKNGIE-
Beauty for GRAILEXP exon 1
Parameters align_beauty 0
[TOP]
BLASTP+BEAUTY Search Results
BLASTP+BEAUTY Search Results
No hits