NCBI

NLM

PubMed Nucleotide Protein Genome Structure PopSet Taxonomy OMIM Books SNP
Search for SNP on NCBI Reference Assembly
Spacer gif
BUILD 129
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Report in Submission Format
SNP:  Handle|local_snp_id:   SI_MHC_SNP | AL713966.7_16191_TC
  NCBI Assay Id(ss#):    ss12694159
  Reference SNP Id(rs#): rs5020948

Batch Detail:
Submitter Handle:           SI_MHC_SNP
Submitter Batch ID:         2003_09_10
Entry Date:                 Sep 10, 2003
Molecular type:             Genomic
No. of Chromosomes sampled: 2
Synonym defined:            
Organism:                   Homo sapiens
Population:                 Not submitted
Submitter Method ID:        MHC_XM20030904
Citation:
   1. The MHC haplotype project: A resource for HLA-linked association
   studies

   View citation details:[1] 

  SubSNP Detail:
  NCBI Assay ID:       ss12694159
  Submitter SNP ID:    AL713966.7_16191_TC
  Synonyms:            
  LOCUSID:             Not submitted
  Submitter STS ID:    Not submitted
  STS Accession:       Not submitted
  GenBanK Accession:   AL713966.7 
  Comment:
     sequence: AL670296.7
     position: 157022
     quality: [40]

  Gene Name:           
  Length:              801
  Flanking Sequence Information:

  5' Assay:   CAATCTGATT TCTAGCACTA CATTTGGGAT ACTGGGTTTT ACTTATATCT TCTCAATTTT
              AGATTCCAGA GATGTATATG TTTTTAAACA CCACAGATAA AATAGGATCA TTATTGAAAT
              TGTATACTGA AAATCAAAGG CCTGGTACGC AGTCACTGCA AAATGTTATA CGGCATGTAC
              TGATGGAGAC CAGATTCATT TTATTCATCA CTCCATTCTC ATGATTTAGA GTAGTAGCTG
              GCATATTCTA AGTCACTAAT AAATATGGGC TGTGTGAAAT ATTGGCTGTG TGATGTTTTG
              CATGAACATT CACCACTGCA CACAGGGACC CTCTCGTATT TCCTTGCCAA TGATGACTGA
              GCATCTCTGG TTCACAGATC CTCCTGCTTC TCTTCAGCCT
  Observed:   T/C
  3' Assay:   TTTAGCCTTC TCCTTTAGAT TCAGCTGGCT CCCTGAACCC AGAGCGCAGT CCTTCCCTGA
              AGCTCTCTAC TCAGAACAGT CAACCTTAAC CTCATCCTCA CTTCTATTTG CTCTTCAAAT
              GGTCCAATCC ATTTTCCATC CTGGATACTC CATTGACTGC AAATACCAAC TCCAGCAAAC
              CCAGCACTTG CTTCTCTCTC ACATTCTCAC TTCACCCACT TTGTGATACT CATTGGCTTc
              tcccttcttc ttgaaaaaaa tctattttcc ttgacttaca tgcattgtgt tctcttggtt
              tttcttcaac atccctgggg ctccctctca gtcccctttg ctggCCTGTG ACTTCTTCTT
              TTTTCTACAC ACAAGCTATT ACCCTATGTA TCCTCTTCCA

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION:
FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
HAPLOTYPE:Submission | Specifications | Sample HapSet | Sample Individual
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement

Revised: May 25, 2006 1:38 PM .