Reference SNP(refSNP) Cluster Report: rs7550383

Reference SNP(refSNP) Cluster Report: rs7550383

refSNP ID: rs7550383
Organism:	human (Homo sapiens)
Molecule Type:	Genomic
Created/Updated in build:	116/129
Map to Genome Build:	36.3

Allele
Variation Class:	SNP: single nucleotide polymorphism
RefSNP Alleles:	A/G
Ancestral Allele:	G
Clinical Association:	unknown

HGVS Names
NM_018417.2:c.3309+108C>T
NT_004487.18:g.18295794G>A

Links

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss39683467 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs7550383 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Success Rate
ss11419487	WI_SSAHASNP\|chr1.NT_004668.15_14175998	fwd/T	A/G	atgtgattttcagtggaaaggggtgctgtc	ggaatatacaacgtgaagtaatcagaaagc	07/03/03	10/25/06	116	Genomic	unknown
ss20548183	SSAHASNP\|WGSA-200403-chr1.chr1.NT_004668.16_6310911	fwd/T	A/G	atgtgattttcagtggaaaggggtgctgtc	ggaatatacaacgtgaagtaatcagaaagc	03/18/04	03/18/04	121	Genomic	unknown
ss23179798	PERLEGEN\|afd0657682	fwd/T	A/G	atgtgattttcagtggaaaggggtgctgtc	ggaatatacaacgtgaagtaatcagaaagc	08/10/04	09/13/04	123	Genomic	unknown
ss39683467	ABI\|hCV30126920	fwd/T	A/G	atgtgattttcagtggaaaggggtgctgtc	ggaatatacaacgtgaagtaatcagaaagc	07/16/05	07/17/05	126	Genomic	unknown
ss87858826	BCMHGSC_JDW\|JWB-0141320	fwd/T	A/G	atgtgattttcagtggaaaggggtgctgtc	ggaatatacaacgtgaagtaatcagaaagc	02/26/08	02/26/08	129	Genomic	unknown

Fasta sequence (Legend)

 AACCAGAATT GCACTTATCC AAAGACCTAC AGGTATTTTG TGCTCACAGG TATTTTAGGC
 TTAACAGAGG GTAAATGCCA CTTGAGGAAG ACTATGCTGA GAGTCCTCTC TGCATCATTT
 TGGGAATGAG ATGTGCCCCC TTACCTCCCA TACAGGTAGA CAATTCATGG CAAGTTTCTA
 AAGGTGGCAA TATTTTAAAT AATTTACAAT GCTAGTTGCA ATGTATTCCA ATTCTCTTTT
 CTCAATCTTA GATCATTTCC CTTCTAAGCA ATGTGATTTT CAGTGGAAAG GGGTGCTGTC
 R
 GGAATATACA ACGTGAAGTA ATCAGAAAGC ATGCTGGAGC TTCCTTCTGG CTCTATGTTC
 TATGAATTGT CTCTAGGGTG GAGGTGGTCT GGGTAGAAAC AGCTTACCAT GTAGTTATCA
 CAAAAGATGA GATAAGCAGA TGCAATTTCT AAGAAGTAAT ATAAGGCTTT GTCATTTTCT
 CCCAAAGCCA GAAAATGGTG GGCCAGAGGC AAGATGACAA TCTCTAGGAT TTCTTCACAC
 TGGCAAGATT CCAGAGGGAT AATGTCTTCG TCAGATGTCT TCATTTTTGT TAAAACGTGG

GeneView

GeneView via analysis of contig annotation: ADCY10 adenylate cyclase 10 (soluble)

View variations for gene:

Include clinically associated:

in gene region cSNP has frequency double hit

Group
Label

Contig->mRNA

Gene Model (contig mRNA transcript) Color Legend

reference

NT_004487->NM_018417

function

Group label	Contig-->mRNA-->Protein	Contig position	mRNA orientation	Function


reference	NT_004487->NM_018417->NP_060887	18295794	reverse	intron

GeneView: no link established by BLAST analysis of mRNA sequences

Integrated Maps:

NCBI MapViewer: rs7550383 maps exactly once on NCBI human chromosome 1

Chromosome	Contig accession	Contig position	Chromosome position	Hit orientation	Contig Allele	Assembly Type	Group label	Contig label	Neighbor SNP	SNP_flank position
1	NW_001838532.2	949704	139051686	minus	T	alt_assembly_8	HuRef	HuRef	view	300
1	NW_926128.1	6169439	140914680	plus	G	alt_assembly_1	Celera	Celera	view	300
1	NT_004487.18	18295794	166072063	plus	G	ref_assembly	reference	reference	view	300

NCBI Resource Links

Submitter-Referenced
GenBank
NT_004668

dbSNP Blast Analysis
GenBank HTGS Finished:
Z99943.1

Population Diversity

	Sample Ascertainment				Genotype Detail				Alleles
ss#	Population	Individual Group	Chrom. Sample Cnt.	Source	A/A	A/G	G/G	HWP	A	G
ss11419487	CHMJ	Asian	74	IG					0.230	0.770

ss23179798	AFD_EUR_PANEL	European	48	IG	0.125	0.583	0.292	0.343	0.417	0.583

	AFD_AFR_PANEL	African American	46	IG	0.304	0.522	0.174	1.000	0.565	0.435

	AFD_CHN_PANEL	Asian	48	IG	0.083	0.375	0.542	1.000	0.271	0.729

Summary	Average Het.+/- std err:	Individual Count	Founders Count	Individual Overlap	Genotype Conflict
	0.486+/-0.083	71	50	0	0

Validation Summary:

Validation status

Marker displays
Mendelian segregation

PCR results confirmed
in multiple reactions

Homozygotes detected
in individual genotype data

DoubleHit found by: BCM_SSAHASNP

UNKNOWN

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Revised: May 25, 2006 1:38 PM .