SMc03860   

       187 letters
ath    80 _  At5g46420 (653)    KOG2388
hsa    64 _  Hs20561331 (1599)  KOG1721
sce    62    YLR440c (709)

BLASTP 2.2.4 [Aug-26-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SMc03860
         (187 letters)

Database: kyva 
           112,920 sequences; 47,500,486 total letters


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g46420                                                              35   0.065
Hs20561331                                                             29   4.7  
YLR440c                                                                28   8.0  

# >At5g46420
#           Length = 653
# 
#  Score = 35.4 bits (80), Expect = 0.065
#  Identities = 43/180 (23%), Positives = 69/180 (37%), Gaps = 34/180 (18%)
# 
# Query: 13  IGAAQGLRGEVRVKSFTDDPAALGDYGNLHSEDGRVF--------------EVLEIRE-- 56
#            +    GL+GE+ +K  TD P          S+ GR +              E++E R   
# Sbjct: 86  LSGVHGLQGEICIKPNTDFPDLR------FSKPGRRWLKQQLLGQDKIDEVELVEGRPHP 139
# 
# Query: 57  AKNVVVVRFRGINDRTAAEALNGLELFIERXXXXXXXXXXXXXXXXXXXGLEAVDRTGKS 116
#            A+   +++FRG++D      L G  L  E                     +  +  TG+ 
# Sbjct: 140 AQKSWILKFRGLDDVDQVRQLVGATLLAEDDDRPELDEGEFYSRDLVGMRV-LLKETGQL 198
# 
# Query: 117 YGSVTGVFDFGAGDLLEL-----------KGPGLRPVLIPFTEWSVLEIDLEAGKLVIDP 165
#             G+V  +FD G  DLL +                + V IPF +  V ++DLE  ++ I P
# Sbjct: 199 VGTVANIFDNGGNDLLHVLLDSSMEVCNGNAKTNQLVWIPFVDAIVPDVDLERKEMYITP 258
# 
# 
# >Hs20561331
#           Length = 1599
# 
#  Score = 29.3 bits (64), Expect = 4.7
#  Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 10/75 (13%)
# 
# Query: 118 GSVTGVFDFGAGDLLELKGP---------GLRPVLIPFTEWSVLEIDLEAGKLVIDPTAA 168
#            GS +   DFGAGDL ++  P         G R V +   +  V+   +   ++++D   A
# Sbjct: 344 GSASRGSDFGAGDLGQVTSPPVKWAPGPQGPRGVCLRGNQAQVISKRIRTRRVIVD-RGA 402
# 
# Query: 169 GLVDDEKSGPGKPFP 183
#            GL    +  PG P P
# Sbjct: 403 GLPRPTQLTPGHPAP 417
# 
# 
# >YLR440c
#           Length = 709
# 
#  Score = 28.5 bits (62), Expect = 8.0
#  Identities = 17/41 (41%), Positives = 22/41 (53%)
# 
# Query: 139 LRPVLIPFTEWSVLEIDLEAGKLVIDPTAAGLVDDEKSGPG 179
#            L  V I  ++WS LE++L A  LV D  A    +D KS  G
# Sbjct: 656 LEEVEIVTSQWSTLELELSARDLVKDKYALDGQNDNKSKVG 696
# 
# 
  Database: kyva
    Posted date:  Nov 11, 2002  5:09 AM
  Number of letters in database: 47,500,486
  Number of sequences in database:  112,920
  
Lambda     K      H
   0.317    0.140    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,672,309
Number of Sequences: 112920
Number of extensions: 568423
Number of successful extensions: 1002
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 999
Number of HSP's gapped (non-prelim): 3
length of query: 187
length of database: 47,500,486
effective HSP length: 103
effective length of query: 84
effective length of database: 35,869,726
effective search space: 3013056984
effective search space used: 3013056984
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
S2: 62 (28.5 bits)