proteins
| 14 proteins |
S | COG3795 | Uncharacterized protein conserved in bacteria | Help | |
|---|---|---|---|---|---|
| 6 from | query genome Mesorhizobium loti (Rhizobiales | Alphaproteobacteria) | ||||
| mll2871 mll4253 mll7838 mlr2587 mlr2988 mlr4612 | ||||
122 letters (r) 0
0 560 = ||| 1 mlr4612 (122) = 0
BLASTP 2.2.4 [Aug-26-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mlr4612
(122 letters)
Database: myva
192,987 sequences; 59,019,183 total letters
Score E
Sequences producing significant alignments: (bits) Value
mlr4612 220 5e-58
PA1349 94 5e-20
PA1354 89 2e-18
mll4253 87 6e-18
mlr2587 83 1e-16
CC0390 77 8e-15
RSp0637 74 5e-14
SMc01151 73 9e-14
mll7838 69 1e-12
mll2871 67 7e-12
AGc1556 67 8e-12
mlr2988 52 2e-07
SMc00939 47 8e-06
alr7046 33 0.11
all0426 30 0.91
BS_dhaS 29 1.4
MK1361 29 1.5
VC2711 29 1.6
mlr4106 29 1.9
SPAC23D3.13c 29 2.2
BH2585 28 3.4
mll0395_1 28 4.2
YPO0036 27 5.5
PA5084 27 9.4
# >mlr4612
# Length = 122
#
# Score = 220 bits (560), Expect = 5e-58
# Identities = 122/122 (100%), Positives = 122/122 (100%)
#
# Query: 1 MRYMLMINNDESALAAMPVEKTQQMSAAYGAYTEALKKSGAWLAGERLRPTQATTSVRIA 60
# MRYMLMINNDESALAAMPVEKTQQMSAAYGAYTEALKKSGAWLAGERLRPTQATTSVRIA
# Sbjct: 1 MRYMLMINNDESALAAMPVEKTQQMSAAYGAYTEALKKSGAWLAGERLRPTQATTSVRIA 60
#
# Query: 61 DGKTNVIDGPYADTKEQLAGFYMIEAADIDTAIEWAARCPAASTGTVELRPIWELADYMP 120
# DGKTNVIDGPYADTKEQLAGFYMIEAADIDTAIEWAARCPAASTGTVELRPIWELADYMP
# Sbjct: 61 DGKTNVIDGPYADTKEQLAGFYMIEAADIDTAIEWAARCPAASTGTVELRPIWELADYMP 120
#
# Query: 121 QK 122
# QK
# Sbjct: 121 QK 122
#
#
# >PA1349
# Length = 116
#
# Score = 94.0 bits (232), Expect = 5e-20
# Identities = 47/116 (40%), Positives = 74/116 (63%), Gaps = 2/116 (1%)
#
# Query: 1 MRYMLMINNDESALAAMPVEKTQQMSAAYGAYTEALKKSGAWLAGERLRPTQATTSVRIA 60
# M+Y+ +I DE+ LAA+P E+ + Y++ L K+G ++A L+ Q T++R
# Sbjct: 1 MKYLCLIYFDEAKLAAVPAEELAAIVDECMTYSDQLGKAGHYIASHALQSVQTATTLRHQ 60
#
# Query: 61 DGKTNVIDGPYADTKEQLAGFYMIEAADIDTAIEWAARCPAASTGTVELRPI--WE 114
# G+ + DGP+A+TKEQL GFY+IEA D++ A++ AA+ P G VE+RP+ WE
# Sbjct: 61 GGRLAMTDGPFAETKEQLGGFYLIEARDLNQALQIAAKIPPGRLGCVEVRPVKEWE 116
#
#
# >PA1354
# Length = 141
#
# Score = 88.6 bits (218), Expect = 2e-18
# Identities = 47/121 (38%), Positives = 75/121 (61%), Gaps = 6/121 (4%)
#
# Query: 1 MRYMLMINNDESALAA-MPVEKTQQMSAAYGAYTEALKKSGAWLAGERLRPTQATTSVRI 59
# MR+M+++ +++ A MP ++++ AA G Y E L K+G LAGE L+P+ VR
# Sbjct: 1 MRFMVIVKATQASEAGEMP---SEELLAAMGRYNEELVKAGVMLAGEGLQPSAKGARVRF 57
#
# Query: 60 ADGKTNVIDGPYADTKEQLAGFYMIEAADIDTAIEWAARCPAASTG--TVELRPIWELAD 117
# + VIDGP+A+T+E +AGF+M + A ++ AIEW RCP G +E+R ++E D
# Sbjct: 58 SGNARTVIDGPFAETRELIAGFWMFQVASLEEAIEWVKRCPNPFDGESEIEIRQVFEAED 117
#
# Query: 118 Y 118
# +
# Sbjct: 118 F 118
#
#
# >mll4253
# Length = 118
#
# Score = 87.0 bits (214), Expect = 6e-18
# Identities = 45/115 (39%), Positives = 72/115 (62%)
#
# Query: 1 MRYMLMINNDESALAAMPVEKTQQMSAAYGAYTEALKKSGAWLAGERLRPTQATTSVRIA 60
# M+Y+ ++ +E L A+ VE+ ++ A AY +L + G + + L+ + + SVR
# Sbjct: 1 MKYVCLVYGEEKDLYALTVERGAKLDADSLAYDRSLDQEGKLIIAQALQSVRTSKSVRRR 60
#
# Query: 61 DGKTNVIDGPYADTKEQLAGFYMIEAADIDTAIEWAARCPAASTGTVELRPIWEL 115
# GK V DGP+A+TKEQL GF M+EA ++D A++ AA P A GTVE+R I+++
# Sbjct: 61 KGKRLVTDGPFAETKEQLLGFVMVEADNLDEALDIAAGIPLAELGTVEVRAIYDI 115
#
#
# >mlr2587
# Length = 134
#
# Score = 82.8 bits (203), Expect = 1e-16
# Identities = 44/118 (37%), Positives = 66/118 (55%)
#
# Query: 1 MRYMLMINNDESALAAMPVEKTQQMSAAYGAYTEALKKSGAWLAGERLRPTQATTSVRIA 60
# MR+M+++ A AA V + A Y E LKK+G LA + L P + V
# Sbjct: 1 MRFMMLMIPGGYAEAAPDVRPDAKGVEAMMKYNEELKKAGVLLALDGLHPPSSGARVSFK 60
#
# Query: 61 DGKTNVIDGPYADTKEQLAGFYMIEAADIDTAIEWAARCPAASTGTVELRPIWELADY 118
# GK V DGP+A+ KE L G+++I+ + AIEWA RCPA +E+R ++E++D+
# Sbjct: 61 GGKPVVTDGPFAEVKEVLGGYWVIDVRSREEAIEWARRCPAGENDLIEVRRVFEMSDF 118
#
#
# >CC0390
# Length = 125
#
# Score = 76.6 bits (187), Expect = 8e-15
# Identities = 40/112 (35%), Positives = 64/112 (56%)
#
# Query: 1 MRYMLMINNDESALAAMPVEKTQQMSAAYGAYTEALKKSGAWLAGERLRPTQATTSVRIA 60
# M+Y L++ +E+ A + + AA+ A+ L + G G+ L+ + T++R +
# Sbjct: 10 MQYALLLYENEAVYAEEGAMSLEAIIAAHNAFAADLAQQGVLRGGQGLKSSDTATTLRKS 69
#
# Query: 61 DGKTNVIDGPYADTKEQLAGFYMIEAADIDTAIEWAARCPAASTGTVELRPI 112
# G + DGPYA+ +EQL GFY+I+ D+D A+ A R P A G VE+RPI
# Sbjct: 70 RGAETLHDGPYAEAREQLGGFYVIDVPDLDAALAIAKRIPFAGDGAVEVRPI 121
#
#
# >RSp0637
# Length = 143
#
# Score = 73.9 bits (180), Expect = 5e-14
# Identities = 42/122 (34%), Positives = 67/122 (54%), Gaps = 7/122 (5%)
#
# Query: 1 MRYMLM-INNDESALAAMPVEKTQQMSAAYGAYTEALKKSGAWLAGERLRPTQATTSVRI 59
# MR+M++ + + ++ MP E + A G Y E+L +G L GE L P+ A V
# Sbjct: 1 MRFMVLRLADPDTEAGVMPSEA---LLAEMGKYMESLANAGVLLGGEGLHPSAAGARVEF 57
#
# Query: 60 ADGKTNVIDGPYADTKEQLAGFYMIEAADIDTAIEWAARCPAASTG---TVELRPIWELA 116
# GK VIDGP+ + KE +AG+ +++ ++ A+EW R PA G +E+R I+E
# Sbjct: 58 RGGKPGVIDGPFTEAKELIAGYTILQVKSLEEALEWCKRWPAMDGGGNVRLEIRRIFEAE 117
#
# Query: 117 DY 118
# D+
# Sbjct: 118 DF 119
#
#
# >SMc01151
# Length = 124
#
# Score = 73.2 bits (178), Expect = 9e-14
# Identities = 47/122 (38%), Positives = 71/122 (57%), Gaps = 5/122 (4%)
#
# Query: 1 MRYMLMINNDESALAAMPVEKTQQMSAAYGAYTEALKKSGAWLAGERLRPTQATTSVRIA 60
# M Y ++ NDES +A E+ +++ A ++G RL PT A ++R +
# Sbjct: 1 MLYAVLCYNDESVTSAWSKEEDERVMRDLSAVQRKYVEAGKLGPVARLVPTTAAATLRHS 60
#
# Query: 61 DGKTNVIDGPYADTKEQLAGFYMIEAADIDTAIEWAARCPAA--STGTVELRPIWELADY 118
# G+T V+DGP+A+TKEQL GFY+I+ A +D A+++A A STG+ E+RP LA Y
# Sbjct: 61 AGETIVMDGPFAETKEQLLGFYLIDCASLDEALDFARDLSNANPSTGSYEVRP---LALY 117
#
# Query: 119 MP 120
# P
# Sbjct: 118 KP 119
#
#
# >mll7838
# Length = 121
#
# Score = 69.3 bits (168), Expect = 1e-12
# Identities = 38/120 (31%), Positives = 64/120 (52%), Gaps = 1/120 (0%)
#
# Query: 1 MRYMLMINNDESALAAMPVEKTQQMSAAYGAYTEALKKSGAWLAGERLRPTQATTSVRIA 60
# MRY +I L + ++ G Y E LK SG ++ E L + ++++
# Sbjct: 1 MRYACLIYYHPQTLFGGSPQADAALAECAG-YDEVLKASGHFVTAEALVLPEEAMTLQVR 59
#
# Query: 61 DGKTNVIDGPYADTKEQLAGFYMIEAADIDTAIEWAARCPAASTGTVELRPIWELADYMP 120
# DGK + +DGP+ +TKE L G +IEA D++ A+ A+ P A+ G +E+RP+ + + P
# Sbjct: 60 DGKMSTVDGPFIETKEVLGGIIVIEARDLNEAVRVASGHPLATIGHIEVRPVVDFSQPRP 119
#
#
# >mll2871
# Length = 124
#
# Score = 67.0 bits (162), Expect = 7e-12
# Identities = 39/114 (34%), Positives = 61/114 (53%), Gaps = 2/114 (1%)
#
# Query: 1 MRYMLMINNDESALAAMPVEKTQQMSAAYGAYTEALKKSGAWLAGERLRPTQATTSVRIA 60
# M Y ++ E +++ + ++ A + K+G RL PT A T++R
# Sbjct: 1 MLYAILCYASEDVVSSWSKAQDDEVMANLINVQDKYAKAGRLGPVARLLPTTAATTLRKV 60
#
# Query: 61 DGKTNVIDGPYADTKEQLAGFYMIEAADIDTAIEWAARCPAA--STGTVELRPI 112
# G+ VIDGP+A+TKEQ GFY +E AD+D A+E+A S G+ E+RP+
# Sbjct: 61 KGEAVVIDGPFAETKEQFLGFYTLECADLDEAVEFARELSEVNPSGGSYEIRPV 114
#
#
# >AGc1556
# Length = 140
#
# Score = 66.6 bits (161), Expect = 8e-12
# Identities = 32/102 (31%), Positives = 54/102 (52%), Gaps = 2/102 (1%)
#
# Query: 19 VEKTQQMSAAYGAYTEALKKSGAWLAGERLRPTQATTSVRIADGKTNVIDGPYADTKEQL 78
# V T ++ A G + E L +G +G+ L P+ V V++GP+ T E +
# Sbjct: 17 VMPTTELMEAMGKFNEELVNAGIMQSGDGLHPSSKGKRVVFDGDSRTVVNGPFPHTNELV 76
#
# Query: 79 AGFYMIEAADIDTAIEWAARCPAA--STGTVELRPIWELADY 118
# AGF++ + D+D A+EW RCP +E+RP++E+ D+
# Sbjct: 77 AGFWIWKVKDMDEAVEWVKRCPNPMLEKSEIEIRPMFEMEDF 118
#
#
# >mlr2988
# Length = 124
#
# Score = 52.0 bits (123), Expect = 2e-07
# Identities = 38/113 (33%), Positives = 56/113 (48%), Gaps = 2/113 (1%)
#
# Query: 1 MRYMLMINNDESALAAMPVEKTQQMSAAYGAYTEALKKSGAWLAGERLRPTQATTSVRIA 60
# M Y ++ + E A+ A+ ++ + A L++ G RL TQ ++R
# Sbjct: 1 MFYAILAYHMEDAIKALTPQEDAALMADLLKINTRLREEGTLGPSARLGATQDAFTLR-G 59
#
# Query: 61 DGKTNVIDGPYADTKEQLAGFYMIEAADIDTAIEWAARCPAA-STGTVELRPI 112
# G VIDGP+A+TKEQL G Y+++ A D AI A ST E+RPI
# Sbjct: 60 PGDGVVIDGPFAETKEQLLGLYVVDCATRDKAIAIARDLRRVNSTAVYEIRPI 112
#
#
# >SMc00939
# Length = 129
#
# Score = 47.0 bits (110), Expect = 8e-06
# Identities = 26/67 (38%), Positives = 41/67 (60%), Gaps = 2/67 (2%)
#
# Query: 47 RLRPTQATTSVRIADGKTNVIDGPYADTKEQLAGFYMIEAADIDTAIEWAARCPAAS-TG 105
# RL T+ ++R DG +IDGP+A+TKEQL G Y+++ +++ A+E A + T
# Sbjct: 47 RLGSTRDAVTLR-GDGAGMIIDGPFAETKEQLLGLYVVDCPNLEAAVETARELRRVNPTA 105
#
# Query: 106 TVELRPI 112
# E+RPI
# Sbjct: 106 VYEIRPI 112
#
#
# >alr7046
# Length = 541
#
# Score = 33.1 bits (74), Expect = 0.11
# Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 13/82 (15%)
#
# Query: 30 GAYTEALKKSGAWLAGERLRPTQATTSVRIADGKTNVIDGPYADTKEQLAGFYMIEAADI 89
# GA E L A LA E+ RP Q T G + ++ + + +AA +
# Sbjct: 460 GAELETLASEAALLAFEQERPQQVTL-------------GDLEECRKTITPLAVQDAAAV 506
#
# Query: 90 DTAIEWAARCPAASTGTVELRP 111
# + EWA AAST + +P
# Sbjct: 507 ERMREWAKTARAASTAIADTKP 528
#
#
# >all0426
# Length = 353
#
# Score = 30.0 bits (66), Expect = 0.91
# Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
#
# Query: 11 ESALAAMPVEKTQQMSAAYGAYTEALKKSGAWLAGERLRPTQATTSVRIADGKTNVIDG 69
# ++ + A P +KT +M AYG + E+LK G ++ G+ + T VR +TN + G
# Sbjct: 80 KAVIIANPEDKTDEMLRAYGRFVESLK--GRFITGQDVNIT--PQDVRTIKQETNYVVG 134
#
#
# >BS_dhaS
# Length = 495
#
# Score = 29.3 bits (64), Expect = 1.4
# Identities = 23/72 (31%), Positives = 32/72 (43%), Gaps = 17/72 (23%)
#
# Query: 60 ADGKTNVIDGPYADTKEQLAGFYMIEAADIDTAI----------EWAARCPAASTGTVEL 109
# A G T D P T E L Y +AAD+D A+ EW PA+ +
# Sbjct: 32 ASGAT--FDTPNPATGETLMTLYEAQAADVDKAVKAARKAFDQGEWRTMSPASRS----- 84
#
# Query: 110 RPIWELADYMPQ 121
# R +++LAD M +
# Sbjct: 85 RLMYKLADLMEE 96
#
#
# >MK1361
# Length = 585
#
# Score = 29.3 bits (64), Expect = 1.5
# Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
#
# Query: 15 AAMPVEKTQQMSAAYGAYTEALKKSGAWLAGERLRPTQATTSVRIADGKTNVIDG----P 70
# A P E + + YG + A+ SG +GE + + T + G V +G P
# Sbjct: 303 AVAPWEPSVPVYVGYGNHEAAVVGSGGRCSGEEVFSREFVTPAELGRGPAGVSEGRGLPP 362
#
# Query: 71 YADT 74
# Y DT
# Sbjct: 363 YGDT 366
#
#
# >VC2711
# Length = 692
#
# Score = 29.3 bits (64), Expect = 1.6
# Identities = 18/67 (26%), Positives = 32/67 (46%)
#
# Query: 13 ALAAMPVEKTQQMSAAYGAYTEALKKSGAWLAGERLRPTQATTSVRIADGKTNVIDGPYA 72
# AL A +Q + + + E + WLAG+ + T RIA G+ ++ G +A
# Sbjct: 320 ALMAPTELLAEQHALNFAQWLEPMGIQVGWLAGKLKGKARETELARIASGEVKMVVGTHA 379
#
# Query: 73 DTKEQLA 79
# +EQ++
# Sbjct: 380 LFQEQVS 386
#
#
# >mlr4106
# Length = 108
#
# Score = 28.9 bits (63), Expect = 1.9
# Identities = 17/35 (48%), Positives = 20/35 (56%), Gaps = 2/35 (5%)
#
# Query: 80 GFYMIEAADIDTAIEWAARCP--AASTGTVELRPI 112
# G+ +IEA DID A E A CP A VE+ PI
# Sbjct: 69 GYSIIEARDIDDAAEKAKGCPMLAMPNCNVEIAPI 103
#
#
# >SPAC23D3.13c
# Length = 1616
#
# Score = 28.9 bits (63), Expect = 2.2
# Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
#
# Query: 50 PTQATTSVRIADGKTNVIDGPYADTKEQLAGFYMIEAADIDTAIEWAARCPAASTGTVEL 109
# PT S +I + NV++ D + +M E+ + +++ RCP AS
# Sbjct: 1299 PTLICLSKKIFENAENVVENHSLDFLNRGTMQHMFESLLVPMRLKY--RCPKASRVNQST 1356
#
# Query: 110 RPIWELA 116
# PIW LA
# Sbjct: 1357 LPIWVLA 1363
#
#
# >BH2585
# Length = 416
#
# Score = 28.1 bits (61), Expect = 3.4
# Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
#
# Query: 50 PTQATTSVRIADGKTNVIDGPYADTKEQLAGFYMIEAADIDTAIEWAARCPAASTGTVEL 109
# P TS+ + G V++ PYA + ++ A ++ A I A+E A C + GT+E
# Sbjct: 51 PKWERTSLALQGGADLVVELPYAFSTQK-AEWFATGAVSILAALEADALCFGSEEGTIE- 108
#
# Query: 110 RPIWELADYM 119
# P L +M
# Sbjct: 109 -PFHRLYHFM 117
#
#
# >mll0395_1
# Length = 244
#
# Score = 27.7 bits (60), Expect = 4.2
# Identities = 14/39 (35%), Positives = 21/39 (52%)
#
# Query: 2 RYMLMINNDESALAAMPVEKTQQMSAAYGAYTEALKKSG 40
# R + I +E AL A+PV T + +A G E + +SG
# Sbjct: 129 RTISAIGENEGALPALPVADTLKRESAAGVVAETVSRSG 167
#
#
# >YPO0036
# Length = 693
#
# Score = 27.3 bits (59), Expect = 5.5
# Identities = 17/66 (25%), Positives = 32/66 (47%)
#
# Query: 13 ALAAMPVEKTQQMSAAYGAYTEALKKSGAWLAGERLRPTQATTSVRIADGKTNVIDGPYA 72
# AL A +Q + + + E L S WLAG++ + +A G+ +++ G +A
# Sbjct: 321 ALMAPTELLAEQHATTFRQWLEPLGFSVGWLAGKQKGKARLAQQEAVASGQVSMVIGTHA 380
#
# Query: 73 DTKEQL 78
# +EQ+
# Sbjct: 381 MFQEQV 386
#
#
# >PA5084
# Length = 416
#
# Score = 26.6 bits (57), Expect = 9.4
# Identities = 10/21 (47%), Positives = 12/21 (56%)
#
# Query: 85 EAADIDTAIEWAARCPAASTG 105
# + D D A+EWA PA TG
# Sbjct: 339 QGGDFDAAVEWAGMRPATPTG 359
#
#
Database: myva
Posted date: Sep 16, 2002 2:25 PM
Number of letters in database: 59,019,183
Number of sequences in database: 192,987
Lambda K H
0.315 0.128 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,509,404
Number of Sequences: 192987
Number of extensions: 465691
Number of successful extensions: 1323
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1301
Number of HSP's gapped (non-prelim): 39
length of query: 122
length of database: 59,019,183
effective HSP length: 98
effective length of query: 24
effective length of database: 40,106,457
effective search space: 962554968
effective search space used: 962554968
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)
S2: 57 (26.6 bits)