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Alignment last updated: 11/20/2008 16:52:00
AL627075.13 Mouse DNA sequence from clone RP23-166L2 on chromosome 4, complete sequence [htgs_phase3]
Length: 194,998 bp
AL669955.6 Mouse DNA sequence from clone RP23-188F1 on chromosome 4, complete sequence [htgs_phase3]
Length: 114,881 bp
Join evaluation: Alignment count: 1
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Mismatches = 0, Gaps = 0, Length = 2000 Percent identity = 100% Score = 3965 bits (2000), Expect = 0 0 BAC and 3 Fosmid bridging clones. 0 BAC and 3 Fosmid concordant clones. 0 BAC and 0 Fosmid discordant clones. AL627075.13 >192999 aattcaaagacaaaaacatgatcatctccttagatgcttagaaagcattggacaaaatcc 193058 AL669955.6 >1 ............................................................ 60 AL627075.13 >193059 aacactcattcatgattaaagtcttagaaagatcaggaagtcaagaccaatacctaatta 193118 AL669955.6 >61 ............................................................ 120 AL627075.13 >193119 taataaaaacaatctacagcaaaccagtagccagcatcaaactaaatagagaaacctaga 193178 AL669955.6 >121 ............................................................ 180 AL627075.13 >193179 agcaatccaactaaaatcagggaatagacaaggctgcccactttctccctacctattcaa 193238 AL669955.6 >181 ............................................................ 240 AL627075.13 >193239 tatagtatttgatatcctaaccaaagcaattcgacatcaaaaggcgatcaaagggataca 193298 AL669955.6 >241 ............................................................ 300 AL627075.13 >193299 aattgtaaaggaagaagtcaaaatatcactatttgcagataatatgatagtttatataca 193358 AL669955.6 >301 ............................................................ 360 AL627075.13 >193359 tgacgctaaaaattccaccaggaaaccctaagtctgataaacagcttcggtgcagtagct 193418 AL669955.6 >361 ............................................................ 420 AL627075.13 >193419 gaatataaaattaactcaaacatatcaatggtctttctccacccaacgaataaacagact 193478 AL669955.6 >421 ............................................................ 480 AL627075.13 >193479 gagaaagaaattagggaacaacacccttcacaatagtcacaaataatataaaataccatt 193538 AL669955.6 >481 ............................................................ 540 AL627075.13 >193539 gtgtgtctctaactaaggaagtgaaagatctgtatgataagaacttcaagtctctggaga 193598 AL669955.6 >541 ............................................................ 600 AL627075.13 >193599 aagaaattaaagatctcagaagatggaaagatctcccatgctcatggattgacaagatca 193658 AL669955.6 >601 ............................................................ 660 AL627075.13 >193659 tcatggattgacaggatgaatgtagtaaaaatggctatcttgccaaaagcaatccaaaga 193718 AL669955.6 >661 ............................................................ 720 AL627075.13 >193719 tcagtgcaatccccatcaaaattccaactcaattcttcacagagttagaaagggcatttt 193778 AL669955.6 >721 ............................................................ 780 AL627075.13 >193779 gtaaattcatctagaataacacaaaacaaaacaaaacaaacaaacaaacaaaaaactatg 193838 AL669955.6 >781 ............................................................ 840 AL627075.13 >193839 acagcaaaaattcttctcatcaataaaagaacctctggtgaaatcaccatgtctgacctc 193898 AL669955.6 >841 ............................................................ 900 AL627075.13 >193899 aagctgtactacaaaaaaaaaaaaaaaaaaaaaaaaatgtgataaaacctgcacggtact 193958 AL669955.6 >901 ............................................................ 960 AL627075.13 >193959 ggtacaatgacagacaggtcaatcaatggaatagaattgaagacccagaaatgaacccat 194018 AL669955.6 >961 ............................................................ 1020 AL627075.13 >194019 acacctatgatcactagatcgttgacaaggagctaaaaccatccagttcaaaaaagacag 194078 AL669955.6 >1021 ............................................................ 1080 AL627075.13 >194079 cattttcaacaaatggtgctcgtacaatttgtggttatgtagaagaatgcaaattaatcc 194138 AL669955.6 >1081 ............................................................ 1140 AL627075.13 >194139 atacttatctccttgtactaaggtcatgtctaagttgatcaaggaactccacataaatgt 194198 AL669955.6 >1141 ............................................................ 1200 AL627075.13 >194199 agagacactgaaacttatagaggagaaagttgtgaaagccttgaagatatgggcacaggg 194258 AL669955.6 >1201 ............................................................ 1260 AL627075.13 >194259 gaaaaatttctgaacagaagagtattggcttgtgatttaagatcaaaaaaatcaacaaat 194318 AL669955.6 >1261 ............................................................ 1320 AL627075.13 >194319 gggaccacataaagttacaaagcttctgtaaggtaaaagacactgtcaataagacaaaaa 194378 AL669955.6 >1321 ............................................................ 1380 AL627075.13 >194379 atgccaccaacagattgggaaaaaatctttaccaatgctaaatcagataagggactaata 194438 AL669955.6 >1381 ............................................................ 1440 AL627075.13 >194439 gccaatatatattaagaagtcaagatggtggactccagaaaatgaaataaccctatttta 194498 AL669955.6 >1441 ............................................................ 1500 AL627075.13 >194499 aaaattgttgtacagagatatacgaagaattctaaactgaggaacactgaatggctgaga 194558 AL669955.6 >1501 ............................................................ 1560 AL627075.13 >194559 agcatctggaaaaatgttcaacattcttaatcatcagggaaatgaaagggaaaacaactc 194618 AL669955.6 >1561 ............................................................ 1620 AL627075.13 >194619 tgagattctacctcataccagtcagattggctaagataaaaaattcaggggacagtagat 194678 AL669955.6 >1621 ............................................................ 1680 AL627075.13 >194679 gttggcaaggatgtggaaaaagaggaacactcctccatttttggtgggattgcaagctgg 194738 AL669955.6 >1681 ............................................................ 1740 AL627075.13 >194739 tacaacccctctagaaatcagtctggcgtttcctcagaaaagtggatatggaagatcctg 194798 AL669955.6 >1741 ............................................................ 1800 AL627075.13 >194799 caatacctctcctgggcatatacccagaaaatgtcctaacttgtaataaggacacatgct 194858 AL669955.6 >1801 ............................................................ 1860 AL627075.13 >194859 ccactgtgttcatatctgccttatttataatagccagaagctggaaagaacccagatgtc 194918 AL669955.6 >1861 ............................................................ 1920 AL627075.13 >194919 cctcaaaagaagaatggatacagaaaatgtgacacatttacacaatgaagtactactcag 194978 AL669955.6 >1921 ............................................................ 1980 AL627075.13 >194979 ctattataaacagtgaattc 194998 AL669955.6 >1981 .................... 2000
Type | Point1 | Point2 | Orient1 | Orient2 | Curator | Comment | Time |
A | 194998 | 2001 | + | + | chenhc | Taxid 10090 chrom 4 Reference assembly | 2008-11-20 16:52:00.926 |
Id | Type | Date | Whodid | Comment |
3365 | ImportOldDb | 09/02/2005 12:29:00 | f_old_db | |
3366 | ReSetShortOvlp | 09/04/2008 10:31:48 | dbo | |
168595 | CreateSwitchPt | 11/20/2008 16:52:00 | chenhc | tpf_builder 1.6 Toolkit wrapper version: built Nov 19 2008 using /netopt/ncbi_tools64/c++.by-date/20081119/GCC401-Release64/lib |
Clone | R | F | ||||
---|---|---|---|---|---|---|
Accession | %id | Position (strand) | Accession | %id | Position (strand) | |
RP23-84D14 | AL627075.13 | 99.28% | pos 37715 (F+) | |||
RP24-113L7 | AL627075.13 | 99.83% | pos 180563 (F+) | |||
RP24-232F16 | AL627075.13 | 99.08% | pos 60344 (F+) | |||
AL627075.13 | 99.08% | pos 64772 (F+) | ||||
RP24-308I11 | AL627075.13 | 99.07% | pos 112366 (F-) | |||
RP24-323O12 | AL627075.13 | 99.12% | pos 37800 (F+) | |||
RP24-364M16 | AL669955.6 | 99.3% | pos 12993 (R+) | |||
RP24-394O3 | AL669955.6 | 99.4% | pos 107691 (R+) |
Clone | R | F | ||||
---|---|---|---|---|---|---|
Accession | %id | Position (strand) | Accession | %id | Position (strand) | |
WI1-1121K20 | AL627075.13 | 99.85% | pos 168700 (R+) | AL669955.6 | 100% | pos 16142 (F-) |
WI1-2301H2 | AL627075.13 | 100% | pos 63007 (R-) | AL627075.13 | 100% | pos 24553 (F+) |
WI1-2371E4 | AL627075.13 | 100% | pos 27818 (F+) | |||
WI1-2425M14 | AL627075.13 | 100% | pos 60524 (F+) | |||
WI1-2447B9 | AL669955.6 | 100% | pos 56121 (R-) | AL669955.6 | 100% | pos 16005 (F+) |
WI1-2779A14 | AL627075.13 | 99.67% | pos 97773 (R+) | AL627075.13 | 99.84% | pos 139788 (F-) |
WI1-2891A4 | AL627075.13 | 100% | pos 184602 (R+) | AL669955.6 | 100% | pos 28851 (F-) |
WI1-313O11 | AL669955.6 | 99.79% | pos 96616 (R-) | AL669955.6 | 100% | pos 57061 (F+) |
WI1-394E12 | AL627075.13 | 100% | pos 20656 (F-) | |||
WI1-403M8 | AL627075.13 | 100% | pos 24572 (R+) | |||
WI1-454F1 | AL627075.13 | 99.84% | pos 60401 (R+) | AL627075.13 | 99.69% | pos 98799 (F-) |
WI1-588P4 | AL627075.13 | 100% | pos 192274 (R+) | AL669955.6 | 100% | pos 37814 (F-) |
WI1-719B23 | AL669955.6 | 100% | pos 4719 (R-) | |||
WI1-82H3 | AL627075.13 | 100% | pos 22344 (R+) | AL627075.13 | 99.71% | pos 61546 (F-) |
WI1-865B15 | AL627075.13 | 100% | pos 71803 (R-) | AL627075.13 | 99.81% | pos 37815 (F+) |
WI1-865P9 | AL627075.13 | 99.7% | pos 37815 (R+) | AL627075.13 | 100% | pos 71779 (F-) |
WI1-965E12 | AL669955.6 | 100% | pos 24526 (R+) | AL669955.6 | 99.54% | pos 66713 (F-) |