NCBI

Alignment last updated: 11/11/2008 11:57:34

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Alignment for AL356750.16 and AL161893.24

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AL356750.16 Human DNA sequence from clone RP11-374F3 on chromosome 13 Contains the KATNAL1 gene for katanin p60 subunit A-like 1, a peroxiredoxin 2 (PRDX2) pseudogene, two novel genes and two CpG islands, complete sequence [htgs_phase3]

Length: 182,303 bp

AL161893.24 Human DNA sequence from clone RP11-223E19 on chromosome 13 Contains a novel gene, a ubiquitin-conjugating enzyme E2L 3 (UBE2L3) pseudogene and two CpG islands, complete sequence [htgs_phase3]

Length: 62,043 bp

Alignment Summary

Join evaluation: green

Alignment count: 1

Go to Endhit Table

  • Alignment 1
  • Align ID: 51899
  • Total Length: 100
  • Aligned Length: 100
  • Percent Identity: 100
  • Number of Gaps: 0
  • Number of Mismatches: 0
  • Source: CtgOverlap Seq-Align
  • Valid Switchpoint: true (L)
  • Valid Switchpoint: true (A)
Overlap Image
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Alignment 1 of 1

 Mismatches = 0, Gaps = 0, Length = 100
 Percent identity = 100%
 Score = 198.7 bits (100), Expect = 1.699e-50
  3 BAC and 115 Fosmid bridging clones.
  3 BAC and 115 Fosmid concordant clones.
  0 BAC and 0 Fosmid discordant clones.

AL356750.16 >182204  ataagaagcctttaaggggtgccttcataagtatatgtgatgatggacaggcgagcccca 182263 
AL161893.24 >1       ............................................................ 60     

AL356750.16 >182264  aaactggggcttagcccgggctttgcccaggaaagaattc 182303 
AL161893.24 >61      ........................................ 100


Switch Points
TypePoint1Point2Orient1Orient2CuratorCommentTime
L182303101++chenhcTaxid 9606 chrom 13 Reference assembly2008-08-08 12:38:57.890
A182303101++chenhcTaxid 9606 chrom 13 Reference assembly2008-11-11 11:57:34.756

Events
IdTypeDateWhodidComment
80998InitHasAlign10/01/2006 15:12:46jcherry
blast parameters: -W 28 -r 1 -q -3 -e 1e-5 -Z 200 -F 'm L; R'
bandwidths: 501 701 1001 5001
Toolkit wrapper version: built Thu Aug 17 17:58:09 EDT 2006 using /netopt/ncbi_tools/c++.by-date/production/20060730

Running blast for AL161893.24 and AL356750.16
Found 1 acceptable dovetail alignment(s) by blast -W 28 -r 1 -q -3 -e 1e-5 -Z 200 -F 'm L; R'
128974CreateSwitchPt08/08/2008 12:38:57chenhc
From Hs build 36.1 agp files
80999ReSetShortOvlp09/04/2008 10:31:48dbo


155872CreateSwitchPt11/11/2008 11:57:34chenhc
contig_builder 1.3  Toolkit wrapper version: built Nov 10 2008 using /netopt/ncbi_tools64/c++.by-date/20081110/GCC401-Release64/lib




   

   

		
		

down arrow  BAC Ends



CloneRF


Accession%idPosition (strand) Accession%idPosition (strand)


CH17-102E13AL356750.1699.2%pos 52208 (R-)  
CH17-115H02AL161893.2497.51%pos 8246 (R-) AL356750.1698.72%pos 872 (F+) 
AL161893.2498.81%pos 8246 (R-)  
CH17-120E10AL356750.1698.36%pos 68523 (R-)  
CH17-122A09AL356750.1699.16%pos 90169 (R+)  
CH17-150K05AL161893.2498.51%pos 29269 (R+)  
AL161893.2499.26%pos 29310 (R+)  
CH17-233G10AL356750.1699.36%pos 100374 (R-)  
CH17-243H12AL356750.1699.34%pos 68574 (R-)  
CH17-249G09AL356750.1698.24%pos 68687 (R+)  
CH17-272K01AL356750.1698.85%pos 138759 (R+)  
CH17-278F01AL161893.2498.42%pos 48265 (R+)  
CH17-306J11AL356750.1697.76%pos 138756 (R+)  
CH17-351D19 AL356750.1699.39%pos 68633 (F+) 
CH17-424I19AL356750.1698.44%pos 68471 (R-)  
CH17-461H20 AL356750.1699.13%pos 33805 (F-) 
CH17-5N01 AL356750.1698.74%pos 138698 (F+) 
CH17-76I05 AL356750.1698.15%pos 33784 (F-) 
CH17-87I01AL356750.1697.71%pos 138714 (R+)  
CTD-2016D22AL161893.2498.67%pos 53015 (R+)  
CTD-2025A17 AL356750.1697.87%pos 78409 (F-) 
 AL356750.1698.9%pos 78409 (F-) 
CTD-2130J20 AL161893.2499.06%pos 13545 (F+) 
CTD-2149K4AL356750.1698.84%pos 93858 (R-)  
CTD-2166N8 AL356750.1698.32%pos 165354 (F+) 
CTD-2213P9AL356750.1698.73%pos 138438 (R+)  
CTD-2298I23AL356750.1697.2%pos 28855 (R-)  
CTD-2308C23 AL356750.1699.49%pos 146459 (F+) 
CTD-2380D6 AL356750.16100%pos 53766 (F-) 
CTD-2528B6AL356750.1698.45%pos 39902 (R-)  
CTD-2533A17AL356750.1699.36%pos 170684 (R+)  
CTD-3006E19AL356750.1697.63%pos 90224 (R+) AL161893.2497.44%pos 48609 (F-) 
CTD-3185P15AL356750.1698.98%pos 39916 (R+) AL356750.1699.57%pos 78929 (F-) 
RP11-135K2 AL356750.1699.65%pos 90110 (F-) 
RP11-20L21AL161893.2497.91%pos 48637 (R-) AL356750.1699.72%pos 69239 (F+) 
RP11-467O9AL356750.1699.82%pos 109613 (R+)  
RP11-664H23AL356750.1699.54%pos 170681 (R-) AL356750.1698.07%pos 30 (F+) 
RP11-668C15 AL356750.1699.73%pos 128493 (F-) 
RP11-891E20 AL356750.1698.52%pos 112967 (F+) 



down arrow  Fosmid Ends



CloneRF


Accession%idPosition (strand) Accession%idPosition (strand)


ABC10-1586270L10AL356750.1698.39%pos 132218 (R+) AL356750.1699.19%pos 174776 (F-) 
ABC10-1623070G11AL356750.1699.81%pos 149570 (R-) AL356750.1699.68%pos 108162 (F+) 
ABC10-43608300C24AL356750.16100%pos 92794 (R-) AL356750.16100%pos 51889 (F+) 
ABC10-43624500J19AL161893.2499.86%pos 26477 (R-) AL356750.1699.66%pos 167902 (F+) 
ABC10-43661500D2AL356750.1698.45%pos 114882 (R+) AL356750.1699.81%pos 153515 (F-) 
ABC10-43662000K13AL356750.16100%pos 176737 (R+) AL161893.2499.71%pos 36382 (F-) 
ABC10-43668000I3AL161893.2498.35%pos 43990 (R-) AL161893.2498.31%pos 3625 (F+) 
ABC10-44081900P12AL356750.1699.66%pos 81114 (R-) AL356750.1699.49%pos 41922 (F+) 
ABC10-44085500B18AL356750.1699.65%pos 99169 (R-) AL356750.16100%pos 55911 (F+) 
ABC10-44118500P1AL356750.16100%pos 138420 (R+) AL356750.1699.41%pos 179987 (F-) 
ABC10-44119000A1AL161893.2498.6%pos 33803 (R+)  
ABC10-44139000K8AL161893.2499.01%pos 12348 (R-) AL356750.16100%pos 153172 (F+) 
ABC10-44140900G21 AL161893.2499.84%pos 28868 (F+) 
ABC10-44141100A3AL356750.1699.86%pos 92794 (R-) AL356750.1699.68%pos 51897 (F+) 
ABC10-44141700A6AL356750.1699.69%pos 152855 (R-) AL356750.1699.79%pos 110244 (F+) 
ABC10-44141800G22AL161893.2499.27%pos 25238 (R+)  
ABC10-44145500E11AL356750.1699.71%pos 144477 (R+) AL161893.24100%pos 3093 (F-) 
ABC10-44146300O13AL356750.16100%pos 137791 (R-) AL356750.16100%pos 97547 (F+) 
ABC10-441850C21AL161893.2499.84%pos 8270 (R+) AL161893.24100%pos 52037 (F-) 
ABC10-44191700A23 AL161893.2499.57%pos 23593 (F+) 
ABC10-44372000J11AL356750.1699.79%pos 182215 (R-)  
ABC10-44372300E2AL161893.2499.15%pos 50047 (R-) AL161893.2499.28%pos 7878 (F+) 
ABC10-44420000N23AL356750.1699.06%pos 169197 (R+) AL161893.2499.82%pos 30525 (F-) 
ABC10-44442700O17AL161893.2499.62%pos 25253 (R+)  
ABC10-44446400M6AL161893.2499.85%pos 25232 (R+)  
ABC10-44450600B8AL356750.1699.44%pos 165444 (R-) AL356750.16100%pos 124534 (F+) 
ABC10-44462100J4AL356750.1699.73%pos 156744 (R-) AL356750.1699.86%pos 112047 (F+) 
ABC10-44469500O16AL356750.1699.84%pos 57479 (R+) AL356750.1699.64%pos 98983 (F-) 
ABC10-44472200I2AL356750.1698.51%pos 169584 (R-) AL356750.1698.88%pos 128046 (F+) 
ABC10-44486700K23AL356750.16100%pos 5736 (R+) AL356750.1699.72%pos 47987 (F-) 
ABC10-44492000N2AL356750.1699.84%pos 161584 (R-) AL356750.1699.69%pos 121610 (F+) 
ABC10-44492300I22AL356750.1699.65%pos 144162 (R+) AL161893.2499.64%pos 4903 (F-) 
ABC10-44494100K14AL356750.1699.02%pos 131118 (R-) AL356750.16100%pos 91763 (F+) 
ABC10-44494300A8AL356750.16100%pos 5724 (R+) AL356750.1699.84%pos 47998 (F-) 
ABC10-44500400C19 AL356750.1699.49%pos 29595 (F-) 
ABC10-44511700H1AL356750.16100%pos 141758 (R+) AL356750.1699.86%pos 182180 (F-) 
ABC10-44515700G12AL161893.2499.67%pos 15548 (R+) AL161893.2499.16%pos 56288 (F-) 
ABC10-44516800G5 AL356750.1699.86%pos 33540 (F-) 
ABC10-44517800F20 AL356750.16100%pos 32509 (F-) 
ABC10-44521200P6 AL356750.1699%pos 32505 (F-) 
ABC10-44529100L6AL356750.1699.85%pos 100125 (R+) AL356750.16100%pos 141751 (F-) 
ABC10-44531100C20 AL356750.16100%pos 18341 (F-) 
ABC10-44534400C13AL356750.1699.24%pos 108435 (R+) AL356750.1699.46%pos 148703 (F-) 
ABC10-44534600I20AL161893.2498.7%pos 9911 (R+)  
ABC10-44535000B22 AL356750.16100%pos 13026 (F-) 
ABC10-44536500G7AL161893.2499.55%pos 29574 (R-) AL356750.1699.59%pos 170660 (F+) 
ABC10-44537500L4 AL161893.2499.72%pos 56618 (F+) 
ABC10-44544600D21AL356750.1699.5%pos 130328 (R-) AL356750.1699.14%pos 94583 (F+) 
ABC10-44548200L5AL356750.1699.3%pos 177657 (R+) AL161893.24100%pos 37729 (F-) 
ABC10-44549200D9AL161893.2498.47%pos 42799 (R-) AL161893.2499.33%pos 104 (F+) 
ABC10-44550500K13AL356750.1699.24%pos 149105 (R+) AL161893.2498.92%pos 8116 (F-) 
ABC10-44553500F12AL356750.16100%pos 135529 (R-) AL356750.1699.69%pos 94873 (F+) 
ABC10-44567700F23AL161893.2499%pos 50039 (R-) AL161893.24100%pos 7888 (F+) 
ABC10-44587400F1AL356750.1699.6%pos 77536 (R+) AL356750.1699.69%pos 117027 (F-) 
ABC10-44587600A21AL356750.16100%pos 100096 (R+) AL356750.1699.05%pos 141770 (F-) 
ABC10-44614800L14AL161893.2499.8%pos 28526 (R+)  
ABC10-44632100D1AL356750.1698.5%pos 22887 (R-)  
ABC10-44637200O13AL161893.24100%pos 29567 (R-) AL356750.1699.08%pos 170649 (F+) 
ABC10-44689900J17AL356750.1699.27%pos 91580 (R+) AL356750.1697.97%pos 135322 (F-) 
ABC10-44690200D21AL161893.2498.67%pos 15569 (R+) AL161893.2499.26%pos 56292 (F-) 
ABC10-44690400N18AL356750.1697.46%pos 124504 (R+) AL356750.1699.86%pos 167389 (F-) 
ABC10-44706900O7AL161893.2498.66%pos 9937 (R+)  
ABC10-44708800A3AL356750.1698.86%pos 94976 (R-) AL356750.1699.38%pos 53678 (F+) 
ABC10-44750200O11AL356750.1699.69%pos 130319 (R-) AL356750.1699.74%pos 94604 (F+) 
ABC10-44751800M8 AL356750.1698.47%pos 34951 (F-) 
ABC10-44768200I5AL161893.2499.56%pos 50040 (R-) AL161893.2499.7%pos 7888 (F+) 
ABC10-44788800G21AL356750.1699.82%pos 105264 (R+) AL356750.1699.86%pos 146556 (F-) 
ABC10-44789300L23 AL356750.1699.04%pos 27245 (F-) 
ABC10-45490900D21AL356750.1699.69%pos 89486 (R+) AL356750.1699.57%pos 131793 (F-) 
ABC10-45497600N3AL356750.1699.71%pos 31212 (R+) AL356750.1699.69%pos 74640 (F-) 
ABC10-45502900P2AL356750.1699.67%pos 99090 (R-) AL356750.16100%pos 55911 (F+) 
ABC10-45505600H6AL356750.16100%pos 1388 (R-)  
ABC10-45509100B3AL356750.1699.87%pos 13170 (R+) AL356750.16100%pos 54213 (F-) 
ABC10-45509100F2AL356750.16100%pos 52340 (R+) AL356750.1699.58%pos 95294 (F-) 
ABC10-45510600H6AL356750.16100%pos 128724 (R+) AL356750.1698.63%pos 170670 (F-) 
ABC10-45513100I20AL356750.1699.86%pos 161615 (R-) AL356750.1699.47%pos 121593 (F+) 
ABC10-45516700E16AL356750.16100%pos 73220 (R+) AL356750.1699.87%pos 116210 (F-) 
ABC10-45524900K8AL356750.1699.85%pos 181255 (R-) AL356750.16100%pos 140537 (F+) 
ABC10-45525100P5 AL161893.2499.37%pos 28852 (F+) 
ABC10-45527100H24 AL356750.16100%pos 29607 (F-) 
ABC10-45528700P22 AL356750.1698.78%pos 126100 (F-) 
ABC10-45542300K8AL356750.1699.06%pos 165499 (R-) AL356750.16100%pos 124477 (F+) 
ABC10-46302800P7AL356750.16100%pos 76198 (R-) AL356750.1699.83%pos 35356 (F+) 
ABC10-46307900K17AL356750.1697.11%pos 75499 (R+) AL356750.1699.68%pos 116197 (F-) 
ABC10-48926100C14AL161893.2499.52%pos 1367 (R+) AL161893.2498.73%pos 44880 (F-) 
ABC10-48926700M15 AL356750.16100%pos 32526 (F-) 
ABC10-48936900O7AL356750.1699.47%pos 133742 (R+) AL356750.16100%pos 173963 (F-) 
ABC11-47096000C14AL356750.16100%pos 54000 (R-) AL356750.1699.43%pos 13208 (F+) 
ABC11-47098000A8AL356750.1699.58%pos 147680 (R+) AL161893.2499.61%pos 4596 (F-) 
ABC11-47139000E15 AL161893.2499.56%pos 37772 (F+) 
ABC11-47139300N17AL161893.2498.97%pos 5505 (R-) AL356750.1699.87%pos 147084 (F+) 
ABC11-47150700B2AL356750.1698.61%pos 134323 (R+) AL356750.1699.71%pos 174042 (F-) 
ABC11-47151000G16AL161893.2499.26%pos 47959 (R+)  
ABC11-47152500F22AL161893.2498.14%pos 9958 (R-) AL356750.1699.2%pos 155376 (F+) 
ABC11-47192000I16AL161893.2498.23%pos 41844 (R-) AL161893.2499.34%pos 1976 (F+) 
ABC11-47214400D13AL356750.1699.47%pos 147673 (R+) AL161893.2499.74%pos 4588 (F-) 
ABC11-47250500K20AL161893.2499.55%pos 18612 (R+) AL161893.2499.07%pos 58254 (F-) 
ABC11-47252300D18AL161893.2498.64%pos 5506 (R-) AL356750.1698.5%pos 147123 (F+) 
AL161893.2498.73%pos 5455 (R-) AL356750.16100%pos 147081 (F+) 
ABC11-47252500K21AL161893.2498.59%pos 18787 (R-) AL356750.1699.29%pos 160039 (F+) 
AL161893.2499.24%pos 18799 (R-) AL356750.1699.43%pos 160012 (F+) 
ABC11-47312800G23AL161893.2498.99%pos 45357 (R-) AL161893.2497.82%pos 1327 (F+) 
ABC11-47377700D15AL356750.1699.67%pos 172240 (R+) AL161893.2499.58%pos 27783 (F-) 
ABC11-47393900H5AL356750.1699.76%pos 89791 (R-) AL356750.1699.87%pos 47389 (F+) 
ABC11-47399800F22AL356750.1699.62%pos 165837 (R+) AL161893.2499.36%pos 20860 (F-) 
ABC11-48018800P7 AL161893.2498.96%pos 25088 (F+) 
ABC11-48019400N16 AL161893.24100%pos 46780 (F+) 
ABC11-48021000G7AL161893.2499.75%pos 30068 (R+)  
ABC11-48023700H11AL161893.2498.27%pos 22885 (R-) AL356750.1699.62%pos 164241 (F+) 
ABC11-48024200L7AL161893.24100%pos 46149 (R+)  
ABC11-48025700L12AL356750.1699.38%pos 170723 (R+) AL161893.24100%pos 28537 (F-) 
ABC11-48026500O12AL356750.1699.48%pos 133378 (R-) AL356750.1699.87%pos 92362 (F+) 
ABC11-48027800K21AL356750.1699.5%pos 135075 (R-) AL356750.1699.73%pos 95422 (F+) 
ABC11-48028100H21AL161893.24100%pos 15507 (R+) AL161893.2499.4%pos 55875 (F-) 
ABC11-48036700D22AL356750.1698.81%pos 152494 (R+) AL161893.2499.6%pos 10105 (F-) 
ABC11-48037800H4AL356750.1699.03%pos 78247 (R+) AL356750.1699.56%pos 119461 (F-) 
ABC11-48043000C9AL356750.1699.34%pos 104019 (R+) AL356750.1699.86%pos 144029 (F-) 
ABC11-48043600K15 AL161893.2499.25%pos 57084 (F+) 
ABC11-48043700E19 AL356750.1699.87%pos 26277 (F-) 
ABC11-48240700E5AL356750.1699.48%pos 86465 (R+) AL356750.16100%pos 123645 (F-) 
ABC11-48240700E7AL356750.1699.61%pos 86465 (R+) AL356750.16100%pos 123657 (F-) 
ABC11-48241100B11AL356750.1699.75%pos 180589 (R-) AL356750.1699.23%pos 138776 (F+) 
ABC11-48241400D7AL356750.1698.87%pos 180580 (R-) AL356750.1698.32%pos 138793 (F+) 
ABC11-48257000D17AL161893.2498.67%pos 56834 (R-) AL161893.2498.89%pos 17308 (F+) 
ABC11-48289100G10AL356750.1698.19%pos 77986 (R+) AL356750.1699.02%pos 116444 (F-) 
ABC11-48292500G16AL356750.1699.49%pos 39152 (R-)  
ABC11-48292900J12 AL356750.1699.4%pos 141933 (F+) 
ABC11-48321000F4 AL161893.2499.79%pos 27439 (F+) 
ABC11-48321000L16AL356750.1699.76%pos 110471 (R+) AL356750.1697.14%pos 151738 (F-) 
ABC11-48326000C13 AL356750.1697.2%pos 122904 (F-) 
ABC11-48335200L9AL356750.1699.48%pos 173985 (R-) AL356750.1699.62%pos 135839 (F+) 
ABC11-48400000J9AL161893.2499.37%pos 17069 (R+) AL161893.2498.95%pos 58555 (F-) 
ABC11-48432200B10AL356750.1698.95%pos 34970 (R-)  
ABC11-48442941E18AL356750.1699.22%pos 176500 (R-) AL356750.1699.72%pos 133672 (F+) 
ABC11-49323500H18AL356750.1699.23%pos 170599 (R-) AL356750.1699.28%pos 131889 (F+) 
ABC11-49336300D23AL356750.1699.85%pos 89785 (R-) AL356750.1699.68%pos 47394 (F+) 
ABC11-49341700D9AL161893.2499.57%pos 14594 (R+) AL161893.2498.65%pos 52994 (F-) 
ABC11-49345700A7AL356750.1699.11%pos 115976 (R+) AL356750.16100%pos 156283 (F-) 
ABC11-49376800N24AL356750.1699.3%pos 155146 (R+) AL161893.2498.67%pos 13244 (F-) 
ABC11-49441100D24AL356750.1699.57%pos 133610 (R+) AL356750.1698.92%pos 173529 (F-) 
ABC11-49470000P8AL161893.2499.33%pos 21146 (R+) AL161893.2498.99%pos 59630 (F-) 
ABC11-49478400F21AL161893.2499.45%pos 21150 (R+) AL161893.2499.21%pos 59621 (F-) 
ABC11-49492200J11AL356750.1699.37%pos 113070 (R+) AL356750.1699.54%pos 154619 (F-) 
ABC11-49494200N5AL161893.2499.83%pos 11836 (R-) AL356750.1699.73%pos 155036 (F+) 
ABC11-49496200E23 AL356750.16100%pos 37126 (F-) 
ABC11-49497100G10AL356750.1699.58%pos 114787 (R+) AL356750.1698.87%pos 154398 (F-) 
ABC11-49509800E3AL356750.1699.87%pos 174642 (R-) AL356750.1699.09%pos 134534 (F+) 
ABC11-49528000P15AL356750.16100%pos 51772 (R+) AL356750.16100%pos 93209 (F-) 
ABC11-49531100C3AL356750.16100%pos 51787 (R+) AL356750.1699.73%pos 93210 (F-) 
ABC11-49538000P13AL356750.1699.83%pos 10994 (R+) AL356750.1699.11%pos 49037 (F-) 
ABC11-49538300P23 AL356750.1699.49%pos 97554 (F-) 
ABC11-49579600F2AL356750.1699.85%pos 152498 (R+) AL161893.2498.69%pos 10110 (F-) 
ABC11-49580000H20 AL161893.2499.7%pos 59631 (F+) 
ABC11-49597800H19AL356750.1699.34%pos 93547 (R-) AL356750.1699.87%pos 53490 (F+) 
ABC11-49600300H22 AL161893.2499.36%pos 57096 (F+) 
ABC11-49601400I19 AL161893.2499.04%pos 43883 (F+) 
ABC11-49606400L6AL161893.2499.5%pos 34457 (R-) AL356750.1699.75%pos 177604 (F+) 
ABC11-49656000I21AL161893.2499.33%pos 46144 (R+)  
ABC11-49677700E4 AL161893.2499.87%pos 31026 (F-) 
ABC12-44765800E17AL356750.1699.79%pos 93325 (R+) AL356750.1699.62%pos 134882 (F-) 
ABC12-46333700F6AL356750.1699.87%pos 96681 (R+) AL356750.1699.7%pos 135778 (F-) 
ABC12-46343700P3AL356750.16100%pos 23245 (R-)  
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