get_probKS() - probability of null hypoth same distrib for
previously computed Kolmogorov-Smirnov stat d & prob of the null
hypothesis of 2 bins of data.
getAllMeanDataGeneListDataForCondition() - get all (mn,SD,prop) list Condition samples'
normalized data for genes in the specified gene list and samples in the condition
list and save in in (meanData[], stdDevData[])
for data filtered by the specified gene list.
getAllawF1F2DataAndBkgdForSample() - get all spot list raw intensity and background data
for genes and return it in the arrays pre-specified by the user.
getEPmaxMeanSampleData() - max mean normalized sample data scale factor
computed over all samples and all genes being used in a list of expression
profiles.
getF1F2dataForSample() - get filtered (f1,f2,prop) lists of Field (F1,F2) data
for sample in (f1List[], f2List[], propList[]) for FILTERED data by
the specified gene list.
getHP_XandYsamplesData() - get filtered (X,Y,prop) lists of X and Y samples data
for single samples in (Xdata[],Ydata[], propList[]) for FILTERED data
by the specified gene list.
getHP_XandYsetDataForSample() - get normalized HP-X, -Y 'sets' (X,Y,prop)
data lists for sample in (Xdata[],Ydata[], propList[] for FILTERED
data by the specified gene list.
getHPdataForSample() - get normalized filtered (data,prop) list single sample's data
for sample in (dataList[], propList[]) for FILTERED data by the
specified gene list.
getListOfGeneFieldsForMID() - get list of Gene fields for a gene by MID
DataFieldNames: "GeneName", "GenBankID", "GenBank3ID", "GenBank5ID",
"CloneID", "LocusID", "UniGeneID", "SwissProtID", "RefSeqID",
"Master_ID", "MasterGeneName", "Generic_ID"
getListsOfEPsamplesMean() - lists of normalized HP-E samples Means EPs for list of MIDs
Compute expression profiles for all of the mid's in the midList[] that are legal
(i.e.
getListsOfOrderedCondListCVs() is last conditions Coeff of Variation[] from
ordered condition list computation computed using calcOrderedCondListExprProfile().
getListsOfOrderedCondListStdDevs() is last conditions StdDev[] from ordered condition
list computation computed using calcOrderedCondListExprProfile().
getMeanDataGeneListDataForCondition() - get filtered (mn,SD,prop) list Condition samples'
normalized data for genes in the specified gene list and samples in the condition
list and save in (meanData[], stdDevData[], propList[])
for data filtered by the specified gene list.
getPluginHashState() - get boolean state value from MAEPlugin hash state storage
This looks for a symbol with the name (pluginName + "." + varName) in the
global hash store.
getPluginHashState() - get byte state value from MAEPlugin hash state storage
This looks for a symbol with the name (pluginName + "." + varName) in the
global hash store.
getPluginHashState() - get double state value from MAEPlugin hash state storage
This looks for a symbol with the name (pluginName + "." + varName) in the
global hash store.
getPluginHashState() - get float state value from MAEPlugin hash state storage
This looks for a symbol with the name (pluginName + "." + varName) in the
global hash store.
getPluginHashState() - get int state value from MAEPlugin hash state storage
This looks for a symbol with the name (pluginName + "." + varName) in the
global hash store.
getPluginHashState() - get long state value from MAEPlugin hash state storage
This looks for a symbol with the name (pluginName + "." + varName) in the
global hash store.
getRawF1F2DataAndBkgdForSample() - get filtered spot list raw intensity and background data
for genes and return it in the arrays pre-specified by the user.
getAllRawHPdataForSample() - get all raw (data,prop) list single sample's
intensity data for single samples in (Xdata[],Ydata[], propList[]) for FILTERED data
by the specified gene list.