NCBI

NLM

PubMed Nucleotide Protein Genome Structure PopSet Taxonomy OMIM Books SNP
Search for SNP on NCBI Reference Assembly
Spacer gif
BUILD 129
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Reference SNP(refSNP) Cluster Report: rs7185768          
refSNP ID: rs7185768
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:116/129
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:A/G
Ancestral Allele:Not available
Clinical Association:unknown
HGVS Names
NM_001039476.1:c.-144-3007C>T
NM_001077350.1:c.393+1519C>T
NT_037887.4:g.105781G>A
Links

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss10807259 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs7185768 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss10807259BCM_SSAHASNP|chr16.NT_037887.3_105781fwd/TA/Gctggtattacaggcgtaagcatttgtgctcgctccggttgcttttacctgtccgtaatca06/30/0310/10/03116Genomicunknown
ss90283543BCMHGSC_JDW|JWB-0906306fwd/TA/Gctggtattacaggcgtaagcatttgtgctcgctccggttgcttttacctgtccgtaatca02/26/0802/29/08129Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs7185768|allelePos=887|totalLen=1090|taxid=9606|snpclass=1|alleles='A/G'|mol=Genomic|build=129
 CTGAGACAGG CATATAAGGT TTGTCAGTCT GCTCTCTCTA TTTCAGGGTT TAAAATTTTT
 CAGAGTAAAA AAAAAAAAGT GTAtttcttt ttttttttaa gatagggtct cactctcttg
 cccaagctgg agtgcagcag atgatcactg ctcactgcca ccttgacctt ccaggctcag
 gtgatcctcc cacctcagcc tcccaggtag ctgggactac aggcgcacat catcatgcct
 ggctaatttt tgtatttttt gtagagatgg ggtttcgcta tgttgcccag gctggtgtca
 aactcctggg ctcaagtgat ccacccacct tggcctcccg aagtgctagg aatacaggag
 tgagccactg tgcctggACA AAAGTGtata ttttaaaaag aaagaatata tatttaaaat
 gacaaaagtg tatattttaa aaagaaagaa tatatattta aaatgacaaa agtatatatt
 ttaaaaaGAA AGACTTGTCC ACCCAAAAAA TACAAACTCT TTACATTATC AAAATTTCTC
 CTACTCGTCA ATATCACGGC CAGCTGAAGT CCTAGACTAT CTTGTTTCCT GTTGCttttt
 tttttttgag ctggagtttc gctcttgttg cccagattgg agtgcaatgg tgcgatctct
 gctcactgca acctccgcct cccggattca accgattcta ctgcctcagc ctcctgagta
 gctggaatta caggtgtcca ccaccacacc tggctaattt tgtatttttt agtagagacg
 gggtatctcc atgctggtca gcctgctctc aaactcctga tctcaggtga tccgcccgct
 tcagcctccc aaagtgctgg tattacaggc gtaagcattt gtgctc
 R
 gctCCGGTTG CTTTTACCTG TCCGTAATCA ATCTATACTT CTCCAGGTTC TGGTCTGATC
 TCCATTTCTC ACCCTTGATG GCAAGAGGAT GGGCCAGTGT ATAATAATCA CCACATTGTT
 TAATCACTCC CCAACTACTA CACACTATGA TTATCTCCAG TTTAATTATT GTTATAAAAA
 TCTTTATTCT TGCTGAGAAC AAG

  GeneView back to top
GeneView via analysis of contig annotation: C16orf35 chromosome 16 open reading frame 35
View variations for gene:
Include clinically associated: in gene region cSNP has frequency double hit
Group
Label		Contig->mRNAGene Model (contig mRNA transcript) Color Legend
referenceNT_037887->NM_001039476
function
referenceNT_037887->NM_001077350
function
"
Group
label		Contig-->mRNA-->ProteinContig
position		mRNA
orientation		mRNA
pos		FunctiondbSNP
allele		Protein
residue		Codon
pos		Amino acid
pos
referenceNT_037887->NM_001039476->NP_001034565105781reverseintron
referenceNT_037887->NM_001077350->NP_001070818105781reverseintron

GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  rs7185768 maps exactly once on NCBI human chromosome 16
ChromosomeContig
accession		Contig
position		Chromosome
position		Hit
orientation		Contig
Allele		Assembly
Type		Group
label		Contig
label		Neighbor
SNP		SNP_flank
position
16NW_001838339.2253962184396minusTalt_assembly_8HuRefHuRefview886
16NT_037887.4105781105781plusGref_assemblyreferencereferenceview886
16NW_926018.183113367463plusGalt_assembly_1CeleraCeleraview886

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_037887
dbSNP Blast Analysis

  Population Diversity back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation		PCR results confirmed
in multiple reactions		Homozygotes detected
in individual genotype data
with2hit
DoubleHit found by:  BCM_SSAHASNP
UNKNOWNUNKNOWNUNKNOWN

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
HAPLOTYPE:Submission | Specifications | Sample HapSet | Sample Individual
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement

Revised: May 25, 2006 1:38 PM .