Collagen, type VI, alpha 3 (Col6a3)

NCBI

UniGene
Homepage
FAQs
Query Tips
Library Browser
DDD
Download UniGene

Related Databases
Gene
HomoloGene
dbEST
Trace Archive

NIH cDNA Projects
MGC | ZGC | XGC
Finding cDNAs

UGID:258570 UniGene Mm.7562 Mus musculus (mouse) Col6a3

Links

Collagen, type VI, alpha 3 (Col6a3)

SELECTED PROTEIN SIMILARITIES

Comparison of sequences in UniGene with selected protein reference sequences. The alignments can suggest function of a gene.

Reference Protein		Species	Id(%)	Len(aa)
XP_902129.2	PREDICTED: similar to collagen, type VI, alpha 3, isoform 2	M. musculus	99.5	3284
NP_004360.2	alpha 3 type VI collagen isoform 1 precursor	H. sapiens	85.6	3166

GENE EXPRESSION

Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.

	EST Profile:	Approximate expression patterns inferred from EST sources. [Show more entries with profiles like this]
	GEO profiles:	Experimental gene expression data (Gene Expression Omnibus).
	cDNA Sources:	embryonic tissue; mammary gland; mixed; muscle; eye; bone marrow; other; thymus; vagina; bladder; testis; heart; skin; bone; uncharacterized tissue; brain; pancreas; ovary; intestine; lung; fertilized ovum; spleen; prostate; kidney; nasopharynx; stomach; liver

MAPPING POSITION

Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.

Chromosome:	1
Map position:	1 D\|1 53.9 cM
UniSTS entry:	Chr 1	AF064749
UniSTS entry:	Chr 1	AI507288

SEQUENCES

Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (7)

AF064750.1	Mus musculus type VI collagen alpha 3 subunit N7 domain mRNA, partial cds	P
Z18279.1	Mus musculus collagen alpha 3 chain type VI	P
AF034136.1	Mus musculus collagen alpha3(VI) (Col6a3) mRNA, partial cds	P
BC049881.1	Mus musculus collagen, type VI, alpha 3, mRNA (cDNA clone IMAGE:5253759), complete cds	PA
BC057903.1	Mus musculus collagen, type VI, alpha 3, mRNA (cDNA clone IMAGE:5025735), complete cds	PA
BC080662.1	Mus musculus collagen, type VI, alpha 3, mRNA (cDNA clone IMAGE:4483085), partial cds	PA
BC005491.1	Mus musculus collagen, type VI, alpha 3, mRNA (cDNA clone IMAGE:3486796), partial cds	PA

EST sequences (10 of 241) [Show all sequences]

CA563281.1	Clone NIA:K0312B01_IMAGE:30055404	bone	5' read	P
CA565170.1	Clone NIA:K0334G04_IMAGE:30057579	bone	5' read	P
CA568652.1	Clone NIA:K0431C11_IMAGE:30062050	bone marrow	5' read	P
CA568671.1	Clone NIA:K0431E07_IMAGE:30062070	bone marrow	5' read	P
BY311376.1	Clone I320020E16	uncharacterized tissue	5' read	P
BY311922.1	Clone I320024H16	uncharacterized tissue	5' read	P
BY415579.1	Clone I920011P22	stomach	3' read	A
BY687000.1	Clone I320020E16	uncharacterized tissue	3' read	A
BY713290.1	Clone 3221403D18	embryonic tissue	5' read	P
CA979111.1	Clone IMAGE:30146184	embryonic tissue	5' read	P

Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria