BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= PI1108
(386 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|155968620|dbj|BAF75780.1| conserved hypothetical protein... 115 5e-24
gi|118032035|ref|ZP_01503486.1| conserved hypothetical prot... 94 1e-17
gi|56478465|ref|YP_160054.1| hypothetical protein, INTERPRO... 91 2e-16
gi|74316693|ref|YP_314433.1| hypothetical protein Tbd_0675 ... 82 5e-14
gi|73538677|ref|YP_299044.1| conserved hypothetical protein... 80 2e-13
gi|119898881|ref|YP_934094.1| hypothetical protein azo2590 ... 75 1e-11
gi|116695426|ref|YP_841002.1| hypothetical protein H16_B148... 73 4e-11
>gi|155968620|dbj|BAF75780.1| conserved hypothetical protein (regulator of chromosome
condensation) [Klebsiella pneumoniae]
Length = 387
Score = 115 bits (288), Expect = 5e-24, Method: Composition-based stats.
Identities = 97/338 (28%), Positives = 155/338 (45%), Gaps = 24/338 (7%)
Query: 11 DRFNYGDLLFPHIVQYYFK-DCVDK-----IVFCSTSKSNLTKSGGIATENFRSLFRAKK 64
DR+NYGD L P +++ + K + DK ++ S S+L+K ++ + L +
Sbjct: 12 DRYNYGDNLMPILLERFLKINFPDKTRTIDFIYASIDSSDLSKYKCYSSIAMKDLLYTQH 71
Query: 65 CDDNFLIVAGGDSLFIDWQTILSFVDSHAKYFYIADNFLR--TTFFSTFYKKFKYHATTL 122
++ +IV GG+ L D T+ + V Y I R ST K F Y A
Sbjct: 72 --NSSIIVVGGEVLGADVGTLYTHVQQSQFYTRILKKIRRFQPKLLSTIAKMF-YPAVWD 128
Query: 123 YPFSIGKDELCNMKKVFYNSLGGSLLEQKKDSLNKQKVTKVLKTVDYISIRDKPTHDLLR 182
YP+ K N KV YN++GG + + TK + +YIS RD+ T++ +
Sbjct: 129 YPYIPQKASFKNNVKVIYNTVGGVPVSSQ---------TKYIAQAEYISARDRRTYEEVT 179
Query: 183 SYGIQNIMVPDSAILMSDIFSEDFLSSHISPAIKDLL-NKKYIFFQINAEHGNDKEKYYS 241
+ +VPDS ++ S I + F+ + I D K+I Q N + +
Sbjct: 180 KWASAE-LVPDSVLIASKIIDDQFMQDFVRKEIIDYCATNKFITVQACPYKVNFSAQDLA 238
Query: 242 DLLSSIAKECKLHICLCPIGLAPGHSDNIPLMKIHEKILGLSTFIRNPTIWDIMYLIKHA 301
L ++ + + + L PIG A GH D I L ++ + IW+IMY + H+
Sbjct: 239 YQLDNVKSQSSIDVVLLPIGYASGHDDVIFLREVQKLAKTELKLEYELNIWEIMYFLSHS 298
Query: 302 RIYVGTSLHGTITAMSYDTAF--ISHGPLKLKNYIMTW 337
+ GTSLHG ITAMS+ I K+K+++ TW
Sbjct: 299 HSFYGTSLHGIITAMSFGVPHFCIDERIEKIKSFVQTW 336
>gi|118032035|ref|ZP_01503486.1| conserved hypothetical protein, INTERPRO prediction: regulator of
chromosome condensation [Burkholderia phymatum STM815]
gi|117982124|gb|EAU96511.1| conserved hypothetical protein, INTERPRO prediction: regulator of
chromosome condensation [Burkholderia phymatum STM815]
Length = 395
Score = 94.0 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 90/349 (25%), Positives = 150/349 (42%), Gaps = 34/349 (9%)
Query: 11 DRFNYGDLLFPHIVQYYFKDCVDKIVFCSTSKSNLTKSGGIATENFRSLFRAKKCDDNFL 70
DR N+GD+LF H+ D + F + +L GG + R + D L
Sbjct: 15 DRHNFGDMLFAHVAARLLTD--RSVRFAGLAARDLRAQGGHCVDTLRP-WHESAVD---L 68
Query: 71 IVAGGDSLFID-WQTILSFVDSHAKYFYIADNFLRTTFFSTFYKKFKYHATTL-----YP 124
+ GG+ L D W+ + IA + +F + L P
Sbjct: 69 LHVGGEILACDAWEAAVMLQAPEDAQRLIA---------LQRHDRFGWAQRVLGTRERAP 119
Query: 125 FSIGKDELCNMKKVFYNSLGGSLLEQKKDSLNKQKVTKVLKTVDYISIRDKPTHDLLRSY 184
+ + K EL V +N++GG L+ + +L + + K L D +S+RD T +L +
Sbjct: 120 YVVSKHELPCAAHVLFNAVGGVALDVRDAALRDEVLAK-LARADDVSVRDLHTQTVLANS 178
Query: 185 GIQNIMVPDSAILMSDIFSEDFLSSHISPAIKDLLN---KKYIFFQINAEHGNDKE-KYY 240
GI + PD A+L +++F + + + A+ L Y+ Q++A+ G+D
Sbjct: 179 GINARLAPDCAVLAAELFGDTIRAHANAAALARLREAAPNGYLAVQLSADFGDDATLARV 238
Query: 241 SDLLSSIAKECKLHICLCPIGLAPGHSDNIPLMKIHEKILGLSTFIRNP-TIWDIMYLIK 299
+ L A +L + L G AP H D L ++ ++ + + IWDI LI
Sbjct: 239 ATQLDRAADAHRLAVVLFRAGAAPWHDDLACLERMAARMRTRHVHVFDSLNIWDICALIA 298
Query: 300 HARIYVGTSLHGTITAMSYDTAFIS-------HGPLKLKNYIMTWLDNG 341
H+R ++G+SLHG I AM++ I+ P K + TW D G
Sbjct: 299 HSRGFIGSSLHGRIVAMAHALPRINVLHDEDFSRPCKQVAFAQTWEDAG 347
>gi|56478465|ref|YP_160054.1| hypothetical protein, INTERPRO prediction: regulator of chromosome
condensation [Azoarcus sp. EbN1]
gi|56314508|emb|CAI09153.1| hypothetical protein; INTERPRO prediction: regulator of chromosome
condensation [Azoarcus sp. EbN1]
Length = 420
Score = 90.5 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 85/318 (26%), Positives = 142/318 (44%), Gaps = 19/318 (5%)
Query: 11 DRFNYGDLLFPHIVQYYFKDCVDKIVFCSTSKSNLTKSGGIATENFRSLFRAKKCDDNFL 70
DR N+GDLLFPHIV D VF ++L + GG A L A L
Sbjct: 35 DRHNFGDLLFPHIVAAMLDD--RNPVFAGLVDADLRRFGGHAVHAIAPLAAAWGERAVNL 92
Query: 71 IVAGGDSLFID-WQT---ILSFVDSHAKYFYIADNFLRTTFFSTFYKKFKYHATTLYPFS 126
I GG+ L W +L ++ A + F + + + + L P+
Sbjct: 93 IHVGGEILTCGAWHAAVMLLPLPEARA----VVARFDPRPEEALEWAQRRLGTRALAPYC 148
Query: 127 IGKDELCNMKKVFYNSLGGSLLEQKKDSLNKQKVTKVLKTVDYISIRDKPTHDLLRSYGI 186
+ +D +V YN++GG+ + ++L + +V L+ D I +RD+ T L + +
Sbjct: 149 VPRDFFPG-ARVIYNAVGGAGFGECDEAL-RAEVLANLRAADTIGVRDRETRAQLAAASV 206
Query: 187 QNIMVPDSAILMSDIFSEDFLSSHIS----PAIKDLLNKKYIFFQINAEHGNDKE-KYYS 241
+VPD A++++ +F E ++ H I+ + Y+ Q +A+ G+D +
Sbjct: 207 PARLVPDPAVMVAVLFGER-IARHARVGEVAQIRAAFPQGYLAVQFSADFGDDATLDAIA 265
Query: 242 DLLSSIAKECKLHICLCPIGLAPGHSDNIPLMKIHEKI-LGLSTFIRNPTIWDIMYLIKH 300
L A+ + L G AP H D ++ ++ L + + IWDI LI
Sbjct: 266 AGLERSARSSGHGVALFRAGAAPWHDDTACYARLAARLPTTLVRIVESLDIWDICALIAA 325
Query: 301 ARIYVGTSLHGTITAMSY 318
+R Y G+SLHG I AM++
Sbjct: 326 SRGYCGSSLHGRIVAMAF 343
>gi|74316693|ref|YP_314433.1| hypothetical protein Tbd_0675 [Thiobacillus denitrificans ATCC
25259]
gi|74056188|gb|AAZ96628.1| conserved hypothetical protein [Thiobacillus denitrificans ATCC
25259]
Length = 432
Score = 82.0 bits (201), Expect = 5e-14, Method: Composition-based stats.
Identities = 84/354 (23%), Positives = 142/354 (40%), Gaps = 33/354 (9%)
Query: 11 DRFNYGDLLFPHIVQYYFKDCVDKIVFCSTSKSNLTKSGGIATENFRSLFRAKKCDDNFL 70
DR N+GDLLFPH++ D + VF + +L + GG R L
Sbjct: 45 DRHNFGDLLFPHLLAALLPD--QRFVFRGLAARDLRRFGG-------HRVRPLASGSPHL 95
Query: 71 IVAGGDSLFID-WQTILSFVDSHAKYFYIADNFLRTTFFSTFYKKFKYHATTLYPFSIGK 129
+ GG+ L WQ + D+ +A + + + + T P+ G+
Sbjct: 96 VHVGGELLTCSAWQAAVMLRDAGETDALVA-RYDAHPADAAKWAADQLGTTRTMPYVAGR 154
Query: 130 DELCNMKKVFYNSLGGSLLEQKKDSLNKQKVTKVLKTVDYISIRDKPTHDLLRSYGIQNI 189
L K+ +N++GG +++V L+ D++S+RD T D LR G+
Sbjct: 155 ALLAPKGKLIFNAVGGVEWHALTPG-QREEVKNALEAADWLSVRDHVTQDALRRDGVVAT 213
Query: 190 MVPDSAILMSDIFS---EDFLSSHISPAIKDLLNKKYIFFQINAEHGNDKE-KYYSDLLS 245
+ PD A+++ F E A++ + Y+ Q + + ++ + L
Sbjct: 214 LCPDPAVMLRQCFGARLEARARGGAVRAVRAAFPQGYLACQFSGDFADEASLDALAGGLG 273
Query: 246 SIAKECKLHICLCPIGLAPGHSDNIPLMKIHEKIL-----GLSTFIRNPTIWDIMYLIKH 300
A L I L G AP H D + ++EK+ G + +WDI LI
Sbjct: 274 DAAATSGLGIVLFRAGAAPWHDD----LALYEKVRARLPPGRGRLFTSLHVWDICALIAA 329
Query: 301 ARIYVGTSLHGTITAMSYDTAFI--------SHGPLKLKNYIMTWLDNGEEHFV 346
+R + +SLH I A+++ + S P K+ + TW G H V
Sbjct: 330 SRGTIASSLHARIAALAFALPRVSLRKPQADSGQPDKVAAFAETWEPEGLPHGV 383
>gi|73538677|ref|YP_299044.1| conserved hypothetical protein, INTERPRO prediction: regulator of
chromosome condensation [Ralstonia eutropha JMP134]
gi|72122014|gb|AAZ64200.1| conserved hypothetical protein, INTERPRO prediction: regulator of
chromosome condensation [Ralstonia eutropha JMP134]
Length = 395
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 77/321 (23%), Positives = 148/321 (46%), Gaps = 24/321 (7%)
Query: 11 DRFNYGDLLFPHIVQYYFKDCVDKIVFCSTSKSNLTKSGGIATENFRSLFR-AKKCDDNF 69
DR N+GDLL HI + K + + + +L+ GG R+L R A+ D
Sbjct: 16 DRHNFGDLLLAHIATHVMKG--GTLHYGGLADRDLSAYGG---HKVRALARVAESLGDTP 70
Query: 70 LIV--AGGDSLFID-WQTILSFVDSHAKYFYIADNFLRTTFFSTFYKKFKYHATTLYPFS 126
+ + GG+ L W+ + + + +A + + + + P+
Sbjct: 71 VDIFHVGGEILTCSAWEAAVMLLPPNEAQAVVARLDAQPAQRAA-WASAQLGLRDFAPYL 129
Query: 127 IGKDELCNMKKVFYNSLGGSLLEQKKDSLNKQKVTKVLKTVDYISIRDKPTHDLLRSYGI 186
+ N+ V Y+++GG L++ + ++ + V K LK +S+RD T +L + G+
Sbjct: 130 LPDGLFANVASVRYHAVGGLDLDRLEPAMRAEVVAK-LKAATSVSVRDLQTRTMLEAAGV 188
Query: 187 QNIMVPDSAILMSDIFSEDFLSSHISPAIKDLLN---KKYIFFQINAEHGNDKE-KYYSD 242
+ PD A++++D+F+ + +++ + Y+ Q +A+ G+D+ +
Sbjct: 189 SCHLAPDPAVMVADMFAPRIREHARQGELARVMSTFPRGYLAVQCSADFGDDETLAALAR 248
Query: 243 LLSSIAKECKLHICLCPIGLAPGHSDNIPLMKIHEKILGL--STFIR---NPTIWDIMYL 297
L +A L I L G AP H D + ++ ++ L S +R + +WDI L
Sbjct: 249 QLEQMATNWDLGIVLFRAGAAPWHDD----LDVYRRLAALMGSVPVRVFGSLNLWDICAL 304
Query: 298 IKHARIYVGTSLHGTITAMSY 318
+ H+R Y G+SLHG+I A ++
Sbjct: 305 VAHSRGYAGSSLHGSIVASAF 325
>gi|119898881|ref|YP_934094.1| hypothetical protein azo2590 [Azoarcus sp. BH72]
gi|119671294|emb|CAL95207.1| conserved hypothetical protein [Azoarcus sp. BH72]
Length = 422
Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 80/342 (23%), Positives = 141/342 (41%), Gaps = 22/342 (6%)
Query: 11 DRFNYGDLLFPHIVQYYF--KDCVDKIVFCSTSKSNLTKSGGIATENFRSLFRAKKCDDN 68
DR N GDLLFPH+V + C+ + +L + GG L K
Sbjct: 25 DRHNLGDLLFPHLVAALLPGRRCIP----AGLAARDLRRWGGHRVYALGQLTANWKGPPP 80
Query: 69 FLIVAGGDSLFID-WQTILSFVDSHAKYFYIADNFLRTTFFSTFYKKFKYHATTLYPFSI 127
L+ AGG+ L D WQ + IA F + + + +T L P+++
Sbjct: 81 VLVHAGGELLDCDAWQAAVMLQTRDGAGQAIA-RFQGLPAAAADWAAEQTGSTALAPYAV 139
Query: 128 GKDELCNMKKVFYNSLGGSLLEQKKDSLNKQKVTKVLKTVDYISIRDKPTHDLLRSYGIQ 187
+ + +N++GG L + + V L+ + +RD+ T L ++GI
Sbjct: 140 AGGRVPAWTTIIHNAVGGVGLAARPAPF-RDTVRAALRDAAAVGVRDRHTQATLAAWGIG 198
Query: 188 NIMVPDSAILMSDIFSEDFL--SSHISPA-IKDLLNKKYIFFQINAEHGNDKE-KYYSDL 243
++++PD A++ + I + + ++ PA I+ L + Y+ Q+ +D +
Sbjct: 199 SVLLPDPAVMTASILGDAVVRRAARGEPALIRRLFPRGYVAVQLGPGFEDDASLARLAGE 258
Query: 244 LSSIAKECKLHICLCPIGLAPGHSDNIPLMKIHEKILGLSTFIRNPTIWDIMYLIKHARI 303
L +A L G AP H D L ++ ++ + + D+ L+ A
Sbjct: 259 LDRVALTTGQATVLFRAGAAPWHDDFFTLTRLAARMRTPVRVFASLHVLDLCALLAGAAG 318
Query: 304 YVGTSLHGTITAMSY--------DTAFISHGPLKLKNYIMTW 337
Y G+SLHG I A ++ +A + G K Y+ TW
Sbjct: 319 YCGSSLHGRIVASAFGRPALTLRSSAAVEQGA-KTHAYLETW 359
>gi|116695426|ref|YP_841002.1| hypothetical protein H16_B1484 [Ralstonia eutropha H16]
gi|113529925|emb|CAJ96272.1| conserved hypothetical protein [Ralstonia eutropha H16]
Length = 405
Score = 72.8 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 72/322 (22%), Positives = 132/322 (40%), Gaps = 26/322 (8%)
Query: 11 DRFNYGDLLFPHIVQYYFKDCVDKIVFCSTSKSNLTKSGGIATENFRSLFRAKKCDDNFL 70
DR N+GDLL PH+++ + ++ NL GG L + +
Sbjct: 20 DRHNFGDLLLPHVMRSLIGPA--NPFYGGLAERNLRIHGGHRVHTLARLAASVGDSAVDV 77
Query: 71 IVAGGDSLFIDWQTILSFVDSHAKYFYIADNFLRTTFFSTFYKKFKYHATTLYPFSIGKD 130
I GG++L + + + T + + + L P+ +
Sbjct: 78 IHVGGETLTCSLWEAAVMLQPPGQARAVVAMLDARPHERTVWAQAQLGIRDLVPYLLPAG 137
Query: 131 ELCNMKKVFYNSLGGSLLEQKKDSLNKQKVTKVLKTVDYISIRDKPTHDLLRSYGIQNIM 190
N+++V +++GG L + ++ + V K L + +RD T +L GI +
Sbjct: 138 IFANVRRVIVHAVGGIELGSVEPAMRAEVVAK-LGAATSVGVRDHQTRAMLAENGIACRL 196
Query: 191 VPDSAILMSDIFSEDFLSSHISPAIKDL------------LNKKYIFFQINAEHGNDKE- 237
PD A+L++++F P I+ + Y+ Q +A+ G+D
Sbjct: 197 EPDPAVLVAELFG---------PCIRRRARQGECARIVSGFSGGYLAVQFSADFGDDDTL 247
Query: 238 KYYSDLLSSIAKECKLHICLCPIGLAPGHSDNIPLMKIHEKILGLSTFI-RNPTIWDIMY 296
+ L IA+ L + L G AP H D ++ ++ G + + +WDI
Sbjct: 248 SQLAAQLERIARARALGMVLFRAGAAPWHDDLACYQRLAARLRGTPVVLFESLNLWDICA 307
Query: 297 LIKHARIYVGTSLHGTITAMSY 318
LI H++ +VG+SLHG I A ++
Sbjct: 308 LIAHSQGFVGSSLHGGIVAGAF 329
Database: nr
Posted date: Sep 17, 2007 11:41 AM
Number of letters in database: 999,999,834
Number of sequences in database: 2,976,859
Database: /nucleus1/users/jsaw/ncbi/db/nr.01
Posted date: Sep 17, 2007 11:48 AM
Number of letters in database: 894,087,890
Number of sequences in database: 2,493,262
Lambda K H
0.324 0.140 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,433,443,943
Number of Sequences: 5470121
Number of extensions: 59270290
Number of successful extensions: 123074
Number of sequences better than 1.0e-05: 7
Number of HSP's better than 0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 123058
Number of HSP's gapped (non-prelim): 9
length of query: 386
length of database: 1,894,087,724
effective HSP length: 135
effective length of query: 251
effective length of database: 1,155,621,389
effective search space: 290060968639
effective search space used: 290060968639
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 131 (55.1 bits)