BLASTP 2.2.4 [Aug-26-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SAG1001
(196 letters)
Database: nr
1,487,057 sequences; 479,114,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|22537161|ref|NP_688012.1| conserved hypothetical protein [Str... 374 e-103
gi|21910426|ref|NP_664694.1| conserved hypothetical protein [Str... 229 2e-59
gi|15675214|ref|NP_269388.1| hypothetical protein [Streptococcus... 229 2e-59
gi|19746183|ref|NP_607319.1| hypothetical protein [Streptococcus... 223 2e-57
gi|16763331|ref|NP_458948.1| subunit S of type I restriction-mod... 64 2e-09
gi|17988797|ref|NP_541430.1| TYPE I RESTRICTION-MODIFICATION ENZ... 49 6e-05
gi|23500569|ref|NP_700009.1| conserved hypothetical protein [Bru... 49 6e-05
gi|23129161|ref|ZP_00110994.1| hypothetical protein [Nostoc punc... 48 7e-05
>gi|22537161|ref|NP_688012.1| conserved hypothetical protein
[Streptococcus agalactiae 2603V/R]
gi|25011090|ref|NP_735485.1| Unknown [Streptococcus agalactiae
NEM316]
gi|22534024|gb|AAM99884.1|AE014237_18 conserved hypothetical
protein [Streptococcus agalactiae 2603V/R]
gi|23095489|emb|CAD46695.1| Unknown [Streptococcus agalactiae
NEM316]
Length = 196
Score = 374 bits (960), Expect = e-103
Identities = 195/196 (99%), Positives = 196/196 (99%)
Query: 1 VPQNPTSNPEKKTYLLSELVDCFKGKAVPSKAEAGDIRIINLSDMSPLGIDYHNLRTFQD 60
+PQNPTSNPEKKTYLLSELVDCFKGKAVPSKAEAGDIRIINLSDMSPLGIDYHNLRTFQD
Sbjct: 1 MPQNPTSNPEKKTYLLSELVDCFKGKAVPSKAEAGDIRIINLSDMSPLGIDYHNLRTFQD 60
Query: 61 EQRSLLKYLLQEGDVLIASKGTVKKVAIFEEQDYPVVASANITILRPTQHIRGYYLKLFF 120
EQRSLLKYLLQEGDVLIASKGTVKKVAIFEEQDYPVVASANITILRPTQHIRGYYLKLFF
Sbjct: 61 EQRSLLKYLLQEGDVLIASKGTVKKVAIFEEQDYPVVASANITILRPTQHIRGYYLKLFF 120
Query: 121 DSEEGQQALENANKGKAVMNISTKELLNIAIPSIPLFRQDYLIQRYKQGLNDYKRKIARA 180
DSEEGQQALENANKGKAVMNISTKELLNIAIPSIPLFRQDYLIQRYKQGLNDYKRKIARA
Sbjct: 121 DSEEGQQALENANKGKAVMNISTKELLNIAIPSIPLFRQDYLIQRYKQGLNDYKRKIARA 180
Query: 181 EQEWERIQNDIRQQLS 196
EQEWERIQNDIRQQLS
Sbjct: 181 EQEWERIQNDIRQQLS 196
>gi|21910426|ref|NP_664694.1| conserved hypothetical protein
[Streptococcus pyogenes MGAS315]
gi|28896002|ref|NP_802352.1| hypothetical protein [Streptococcus
pyogenes SSI-1]
gi|21904624|gb|AAM79497.1| conserved hypothetical protein
[Streptococcus pyogenes MGAS315]
gi|28811252|dbj|BAC64185.1| hypothetical protein [Streptococcus
pyogenes SSI-1]
Length = 198
Score = 229 bits (584), Expect = 2e-59
Identities = 113/180 (62%), Positives = 141/180 (77%)
Query: 16 LSELVDCFKGKAVPSKAEAGDIRIINLSDMSPLGIDYHNLRTFQDEQRSLLKYLLQEGDV 75
L +VDCFKGKAV SK GD+ +INLSDM LGI YH LRTFQ ++R LL+YLL++GDV
Sbjct: 18 LGTVVDCFKGKAVSSKVVPGDVGLINLSDMGTLGIQYHQLRTFQMDRRQLLRYLLEDGDV 77
Query: 76 LIASKGTVKKVAIFEEQDYPVVASANITILRPTQHIRGYYLKLFFDSEEGQQALENANKG 135
LIASKGT+KKV +F +Q+ VVAS+NIT+LRP + +RGYY+K F DS GQ L+ A+ G
Sbjct: 78 LIASKGTLKKVCVFHKQNRDVVASSNITVLRPQKLLRGYYIKFFLDSPIGQALLDAADHG 137
Query: 136 KAVMNISTKELLNIAIPSIPLFRQDYLIQRYKQGLNDYKRKIARAEQEWERIQNDIRQQL 195
K V+N+STKELL+I IP IPL +QDYLI Y +GL DY RK+ RAEQEWE IQN+I++ L
Sbjct: 138 KDVINLSTKELLDIPIPVIPLVKQDYLINHYLRGLTDYHRKLNRAEQEWEYIQNEIQKGL 197
>gi|15675214|ref|NP_269388.1| hypothetical protein [Streptococcus
pyogenes]
gi|13622382|gb|AAK34109.1| hypothetical protein [Streptococcus
pyogenes M1 GAS]
Length = 198
Score = 229 bits (583), Expect = 2e-59
Identities = 113/180 (62%), Positives = 141/180 (77%)
Query: 16 LSELVDCFKGKAVPSKAEAGDIRIINLSDMSPLGIDYHNLRTFQDEQRSLLKYLLQEGDV 75
L +VDCFKGKAV SK GD+ +INLSDM LGI YH LRTFQ ++R LL+YLL++GDV
Sbjct: 18 LGTVVDCFKGKAVSSKVVPGDVGLINLSDMGTLGIQYHQLRTFQMDRRQLLRYLLEDGDV 77
Query: 76 LIASKGTVKKVAIFEEQDYPVVASANITILRPTQHIRGYYLKLFFDSEEGQQALENANKG 135
LIASKGT+KKV +F +Q+ VVAS+NIT+LRP + +RGYY+K F DS GQ L+ A+ G
Sbjct: 78 LIASKGTLKKVCVFHKQNRDVVASSNITVLRPQKLLRGYYIKFFLDSPIGQALLDVADHG 137
Query: 136 KAVMNISTKELLNIAIPSIPLFRQDYLIQRYKQGLNDYKRKIARAEQEWERIQNDIRQQL 195
K V+N+STKELL+I IP IPL +QDYLI Y +GL DY RK+ RAEQEWE IQN+I++ L
Sbjct: 138 KDVINLSTKELLDIPIPVIPLVKQDYLINHYLRGLTDYHRKLNRAEQEWEYIQNEIQKGL 197
>gi|19746183|ref|NP_607319.1| hypothetical protein [Streptococcus
pyogenes MGAS8232]
gi|19748364|gb|AAL97818.1| hypothetical protein [Streptococcus
pyogenes MGAS8232]
Length = 198
Score = 223 bits (567), Expect = 2e-57
Identities = 111/180 (61%), Positives = 140/180 (77%)
Query: 16 LSELVDCFKGKAVPSKAEAGDIRIINLSDMSPLGIDYHNLRTFQDEQRSLLKYLLQEGDV 75
L +VD FKGKAV SK GD ++NLSDM LGI YH LRTFQ ++R LL+YLL++GDV
Sbjct: 18 LGTVVDYFKGKAVSSKVVPGDAGLVNLSDMGTLGIQYHQLRTFQMDRRQLLRYLLEDGDV 77
Query: 76 LIASKGTVKKVAIFEEQDYPVVASANITILRPTQHIRGYYLKLFFDSEEGQQALENANKG 135
LIASKGT+KKV +F +Q+ VVAS+NIT+LRP + +RGYY+K F DS GQ L+ A+ G
Sbjct: 78 LIASKGTLKKVCVFHKQNRDVVASSNITVLRPQKLLRGYYIKFFLDSPIGQALLDAADHG 137
Query: 136 KAVMNISTKELLNIAIPSIPLFRQDYLIQRYKQGLNDYKRKIARAEQEWERIQNDIRQQL 195
K V+N+STKELL+I IP IPL +QDYLI Y +GL DY RK++RAEQEWE IQN+I++ L
Sbjct: 138 KDVINLSTKELLDIPIPVIPLVKQDYLINHYLRGLTDYHRKLSRAEQEWEYIQNEIQKGL 197
>gi|16763331|ref|NP_458948.1| subunit S of type I
restriction-modification system [Salmonella enterica
subsp. enterica serovar Typhi]
gi|29144809|ref|NP_808151.1| subunit S of type I
restriction-modification system [Salmonella enterica
subsp. enterica serovar Typhi Ty2]
gi|25289196|pir||AB1069 chain S of type I restriction-modification
system [imported] - Salmonella enterica subsp. enterica
serovar Typhi (strain CT18)
gi|16505640|emb|CAD03369.1| subunit S of type I
restriction-modification system [Salmonella enterica
subsp. enterica serovar Typhi]
gi|29140448|gb|AAO72011.1| subunit S of type I
restriction-modification system [Salmonella enterica
subsp. enterica serovar Typhi Ty2]
Length = 462
Score = 63.5 bits (153), Expect = 2e-09
Identities = 36/148 (24%), Positives = 72/148 (48%)
Query: 35 GDIRIINLSDMSPLGIDYHNLRTFQDEQRSLLKYLLQEGDVLIASKGTVKKVAIFEEQDY 94
GD++ + +D++ +D+ ++ D + KY LQ+ D++I+ G+V + +
Sbjct: 34 GDVKFLRTTDITKGAVDWSSVPYCMDAPEDVSKYQLQDRDIVISRAGSVGFSFLVQNPPS 93
Query: 95 PVVASANITILRPTQHIRGYYLKLFFDSEEGQQALENANKGKAVMNISTKELLNIAIPSI 154
VV ++ + +P + YYLK F +S + L + G AV N++ ++L + +P
Sbjct: 94 QVVFASYLIRFKPVNYFSEYYLKRFLESSDYWNQLSLMSAGNAVQNVNAQKLSTLTVPIP 153
Query: 155 PLFRQDYLIQRYKQGLNDYKRKIARAEQ 182
P+ Q + ++ L AR EQ
Sbjct: 154 PIAEQKIIAEKLDTLLAQVDSTKARLEQ 181
>gi|17988797|ref|NP_541430.1| TYPE I RESTRICTION-MODIFICATION
ENZYME, S SUBUNIT [Brucella melitensis]
gi|25387857|pir||AC3566 type I restriction-modification enzyme, s
chain [imported] - Brucella melitensis (strain 16M)
gi|17984615|gb|AAL53694.1| TYPE I RESTRICTION-MODIFICATION ENZYME,
S SUBUNIT [Brucella melitensis 16M]
Length = 209
Score = 48.5 bits (114), Expect = 6e-05
Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 66 LKYLLQEGDVLIASKGTVKKVAIFEEQDYPVVASANITILRPTQHIRGYYLKLFFDSEEG 125
+ Y +Q GDVL+ +GT+ K + ++ VASANI ++RP G L S+
Sbjct: 72 MTYAVQAGDVLVTGRGTLLKFGLVGDETAGAVASANIIVVRPAPDATGGALFAILSSDVF 131
Query: 126 QQALENANKG-KAVMNISTKELLNIAIPSIPLFRQDYLIQRYKQGLNDYKRKIARAE 181
+ +E +G ++++S K+L N+ I L Q+ + K+ Y+ + A+
Sbjct: 132 RPKIEVLRRGATTLLSLSPKDLANLEINLPSLNEQERIAALVKEAQVAYRTALEAAK 188
>gi|23500569|ref|NP_700009.1| conserved hypothetical protein
[Brucella suis 1330]
gi|23464206|gb|AAN34014.1|AE014578_2 conserved hypothetical protein
[Brucella suis 1330]
Length = 210
Score = 48.5 bits (114), Expect = 6e-05
Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 66 LKYLLQEGDVLIASKGTVKKVAIFEEQDYPVVASANITILRPTQHIRGYYLKLFFDSEEG 125
+ Y +Q GDVL+ +GT+ K + ++ VASANI ++RP G L S+
Sbjct: 73 MTYAVQAGDVLVTGRGTLLKFGLVGDETAGAVASANIIVVRPAPDATGGALFAILSSDVF 132
Query: 126 QQALENANKG-KAVMNISTKELLNIAIPSIPLFRQDYLIQRYKQGLNDYKRKIARAE 181
+ +E +G ++++S K+L N+ I L Q+ + K+ Y+ + A+
Sbjct: 133 RPKIEVLRRGATTLLSLSPKDLANLEINLPSLNEQERIAALVKEAQVAYRTALEAAK 189
>gi|23129161|ref|ZP_00110994.1| hypothetical protein [Nostoc
punctiforme]
Length = 158
Score = 48.1 bits (113), Expect = 7e-05
Identities = 30/106 (28%), Positives = 55/106 (51%), Gaps = 4/106 (3%)
Query: 70 LQEGDVLIASKGTVKKVAIFEEQDYPVVASANITILRPT----QHIRGYYLKLFFDSEEG 125
LQ GD++ KG+ A+ E + + S+ I ++R T Q + Y+ LF +S+ G
Sbjct: 10 LQIGDIIFTRKGSFGNSAVVTELEVNGIISSEIMLVRLTSVSRQEVLPEYVSLFLNSKFG 69
Query: 126 QQALENANKGKAVMNISTKELLNIAIPSIPLFRQDYLIQRYKQGLN 171
+E+ G A +IS +L N+ IP +P ++Q + ++ K +
Sbjct: 70 YLQVEHRVHGVAYYSISQPDLANLLIPILPKYQQQKIAEKIKSSFS 115
Database: nr
Posted date: Aug 11, 2003 9:58 AM
Number of letters in database: 479,114,161
Number of sequences in database: 1,487,057
Lambda K H
0.316 0.135 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 175,981,894
Number of Sequences: 1487057
Number of extensions: 6796606
Number of successful extensions: 19231
Number of sequences better than 1.0e-04: 8
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 19225
Number of HSP's gapped (non-prelim): 9
length of query: 196
length of database: 479,114,161
effective HSP length: 117
effective length of query: 79
effective length of database: 305,128,492
effective search space: 24105150868
effective search space used: 24105150868
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 113 (48.1 bits)