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BLASTX+BEAUTY Search Results

WU-BLAST 2.0 search of the National Center for Biotechnology Information's NR Protein Database.

BEAUTY post-processing provided by the Human Genome Sequencing Center, Baylor College of Medicine.

BEAUTY Reference:
Worley KC, Culpepper P, Wiese BA, Smith RF. BEAUTY-X: enhanced BLAST searches for DNA queries. Bioinformatics 1998;14(10):890-1. Abstract

Worley KC, Wiese BA, Smith RF. BEAUTY: an enhanced BLAST-based search tool that integrates multiple biological information resources into sequence similarity search results. Genome Res 1995 Sep;5(2):173-84 Abstract 






processing output:
cycle 1
cycle 2
cycle 3
cycle 4
The files 
/repeatmasker/tmp/RM2sequpload_2145.stderr 
exist and will be overwritten.
Quit (^c) and rename files if you'd like to save them.


Repeat sequence:
   SW  perc perc perc  query               position in query    matching repeat         position in  repeat
score  div. del. ins.  sequence            begin  end (left)    repeat   class/family   begin  end (left)  ID

  216   0.0  0.0  0.0  SSH6C05.SEQ(1>287)      9   32  (232) +  (T)n     Simple_repeat      1   24    (0)      
   26   3.0  0.0  0.0  SSH6C05.SEQ(1>287)     44   76  (188) +  AT_rich  Low_complexity     1   33    (0)      



Alignments:
216  0.00  0.00  0.00  SSH6C05.SEQ(1>287)  9  32  (232)  C  (A)n#Simple_repeat  (156)  24  1  5

  SSH6C05.SEQ(1>2      9 TTTTTTTTTTTTTTTTTTTTTTTT 32     
                                                 
C (A)n#Simple_rep     24 TTTTTTTTTTTTTTTTTTTTTTTT 1      

Transitions / transversions = 1.00 (0 / 0)
Gap_init rate = 0.00 (0 / 24), avg. gap size = 0.00 (0 / 0)  


26  3.03  0.00  0.00  SSH6C05.SEQ(1>287)  44  76  (188)  C  AT_rich#Low_complexity  (252)  48  16  5

  SSH6C05.SEQ(1>2     44 ATTAATTAATATATAATTAATAAGAAAAAAAAT 76     
                         v vvv  v    vvvv vvv v vvvvv v v 
C AT_rich#Low_com     48 TTATTTTTATATTATTTATTTTATTTTTATATT 16     

Transitions / transversions = 0.00 (0 / 20)
Gap_init rate = 0.00 (0 / 33), avg. gap size = 0.00 (0 / 0)  



Masked Sequence:
>SSH6C05.SEQ(1>287)
RSGCAAGCNNNNNNNNNNNNNNNNNNNNNNNNACCCTAAAAAGNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNCAATTAGCTTCATTACAATAAACG
AAGTCGTCCAATTCCGAACAAACTAAATCAGGAGCCCCAAGTCAAATTAA
AAAAAAAGTTAACAAGACCTCAACTGAACCGGAGTCGAATTATTCAAAAC
TACAAAAAGAAAAGGAAAAGGAAACAAAACAAAATAGGAGTTTTATCAAA
AAGATCATCCTGGT



Summary:
==================================================
file name: /repeatmasker/tmp/RM2seq
sequences:            1
total length:       264 bp
GC level:         27.38 %
bases masked:        57 bp ( 21.59 %)
==================================================
               number of      length   percentage
               elements*    occupied  of sequence
--------------------------------------------------
SINEs:                0            0 bp     0.00 %
      ALUs            0            0 bp     0.00 %
      MIRs            0            0 bp     0.00 %

LINEs:                0            0 bp     0.00 %
      LINE1           0            0 bp     0.00 %
      LINE2           0            0 bp     0.00 %
      L3/CR1          0            0 bp     0.00 %

LTR elements:         0            0 bp     0.00 %
      MaLRs           0            0 bp     0.00 %
      ERVL            0            0 bp     0.00 %
      ERV_classI      0            0 bp     0.00 %
      ERV_classII     0            0 bp     0.00 %

DNA elements:         0            0 bp     0.00 %
      MER1_type       0            0 bp     0.00 %
      MER2_type       0            0 bp     0.00 %

Unclassified:         0            0 bp     0.00 %

Total interspersed repeats:        0 bp     0.00 %


Small RNA:            0            0 bp     0.00 %

Satellites:           0            0 bp     0.00 %
Simple repeats:       1           24 bp     9.09 %
Low complexity:       1           33 bp    12.50 %
==================================================

* most repeats fragmented by insertions or deletions
  have been counted as one element

The sequence(s) were assumed to be of primate origin.
RepeatMasker version 07/16/2000               default
ProcessRepeats version 07/16/2000
Repbase version 03/31/2000




Reference:  Gish, Warren (1994-1997).  unpublished.
Gish, Warren and David J. States (1993).  Identification of protein coding
regions by database similarity search.  Nat. Genet. 3:266-72.


Notice:  statistical significance is estimated under the assumption that the
equivalent of one entire reading frame in the query sequence codes for protein
and that significant alignments will involve only coding reading frames.


Query=  SSH6C05.SEQ(1>287)
        (264 letters)

  Translating both strands of query sequence in all 6 reading frames


Database:  nr
           505,245 sequences; 158,518,215 total letters.


     Observed Numbers of Database Sequences Satisfying
    Various EXPECTation Thresholds (E parameter values)

        Histogram units:      = 19 Sequences     : less than 19 sequences

 EXPECTation Threshold
 (E parameter)
    |
    V   Observed Counts-->
  10000 7925 1128 |===========================================================
   6310 6797  956 |==================================================
   3980 5841  834 |===========================================
   2510 5007  715 |=====================================
   1580 4292  603 |===============================
   1000 3689  576 |==============================
    631 3113  639 |=================================
    398 2474  641 |=================================
    251 1833  506 |==========================
    158 1327  366 |===================
    100  961  315 |================
   63.1  646  248 |=============
   39.8  398  136 |=======
   25.1  262   98 |=====
   15.8  164   66 |===
 >>>>>>>>>>>>>>>>>>>>>  Expect = 10.0, Observed = 98  <<<<<<<<<<<<<<<<<
   10.0   98   49 |==
   6.31   49   18 |:
   3.98   31   18 |:
   2.51   13    7 |:
   1.58    6    3 |:
   1.00    3    2 |:
   0.63    1    0 |
   0.40    1    1 |:


                                                                     Smallest
                                                                       Sum
                                                     Reading  High  Probability
Sequences producing High-scoring Segment Pairs:        Frame Score  P(N)      N
gi|2121282|gb|AAC46122.1|(AF000270) unknown [Borrelia... +3    68  0.31      1
gi|7705417ref|NP_057371.1| HP1-BP74 >gi|6523823|gb|AA... +2    76  0.50      1
gi|7271071|emb|CAB77657.1|(AJ390520) hypothetical pro... +2    65  0.53      1
gi|507353|gb|AAA60374.1|(U05670) Lex2A [Haemophilus i... +2    63  0.71      1
gi|5281349|gb|AAD41489.1|AF136454_1(AF136454) lymphoc... +3    48  0.79      2
gi|1731091|sp|P54568|YQKE_BACSUHYPOTHETICAL 9.1 KD PR... +2    62  0.79      1
gi|1480112|emb|CAA67961.1|(X99642) HP1-BP74 protein [... +2    69  0.80      1
gi|6103005|emb|CAB59205.1|(AJ250406) poly-glutamine t... +2    68  0.84      1
gi|3158504|gb|AAC17550.1|(AF067613) F56D6.6 gene prod... +2    68  0.85      1
gi|4417274|gb|AAD20399.1|(AC007019) hypothetical prot... +2    71  0.86      1
gi|6382301|gb|AAF07615.1|AE001579_44(AE001579) hypoth... +3    69  0.89      1
gi|7292744|gb|AAF48140.1|(AE003488) CG2779 gene produ... +2    70  0.91      1
gi|1176743|sp|P45920|YQBD_BACSUHYPOTHETICAL 36.2 KD P... +2    68  0.92      1
gi|7524762ref|NP_045764.1| ORF110 >gi|7452078|pir||T0... +2    60  0.92      1
gi|7292072|gb|AAF47485.1|(AE003471) CG2199 gene produ... +2    72  0.92      1
gi|6322824ref|NP_012897.1| Large subunit of transcrip... +2    70  0.93      1
gi|6382100|gb|AAF07418.1|AE001575_19(AE001575) conser... +3    68  0.93      1
gi|6094021|sp|O65729|RL18_CICAR60S RIBOSOMAL PROTEIN ... +3    48  0.93      2
gi|7496472|pir||T19456hypothetical protein C25D7.12 -... +2    68  0.93      1
gi|1438951|gb|AAB04133.1|(U61842) cutinase negative a... +2    70  0.94      1
gi|7509508|pir||T26569hypothetical protein Y26D4A.9 -... +2    61  0.94      2
gi|7430121|pir||C70437ATP synthase F0 subunit b - Aqu... +2    62  0.94      1
gi|7510715|pir||T27534hypothetical protein ZC376.8 - ... +2    67  0.94      1
gi|121957|sp|P10156|H1_TETTHHISTONE H1 >gi|84354|pir|... +2    63  0.94      1
gi|1945332|emb|CAA97180.1|(Z72946) ORF YGR159c [Sacch... +2    64  0.95      1
gi|2605825|gb|AAC38055.1|(AF028006) ATP synthase b su... +2    68  0.96      1
gi|7514263|pir||G70331anti sigma factor FlgM - Aquife... +2    59  0.96      1
gi|2506191|sp|P19619|ANX1_PIGANNEXIN I (LIPOCORTIN I)... +3    50  0.96      2
gi|133016|sp|P17937|RL7A_SCHPO60S RIBOSOMAL PROTEIN L... +3    65  0.97      1
gi|6453446|emb|CAB61367.1|(AL133039) hypothetical pro... +2    62  0.97      1
gi|7490722|pir||T37930hypothetical lysine-rich protei... +2    64  0.98      1
gi|7518452|pir||C71227hypothetical protein PH0077 - P... -2    58  0.98      1
gi|7108562|gb|AAF36478.1|AF128264_3(AF128264) unknown... +2    58  0.98      1
gi|7500669|pir||T33457hypothetical protein F36H12.3 -... +2    66  0.99      1
gi|6856122|gb|AAF29790.1|AF169008_17(AF169008) ORF18/... +3    66  0.99      1
gi|7496473|pir||T19449hypothetical protein C25D7.2 - ... +2    65  0.99      1
gi|7297527|gb|AAF52782.1|(AE003625) CG17855 gene prod... +2    51  0.99      2
gi|2668773|gb|AAB88624.1|(AF035681) nonstructural pro... +2    59  0.995     1
gi|2199512|gb|AAB61638.1|(U81504) beta-3A-adaptin sub... +2    71  0.995     1
gi|2128742|pir||G64454hypothetical protein MJ1240 - M... +2    57  0.995     1
gi|1899113|gb|AAC56996.1|(U86774) tat protein [Human ... +2    57  0.995     1
gi|2957148|gb|AAC05708.1|(L47325) emm32 [Streptococcu... +2    57  0.995     1
gi|7295236|gb|AAF50558.1|(AE003559) CG14835 gene prod... +3    60  0.995     1
gi|6728976|gb|AAF26974.1|AC018363_19(AC018363) unknow... +2    49  0.996     2
gi|7487352|pir||T08567hypothetical protein T22F8.90 -... +2    64  0.996     1
gi|2160143|gb|AAB60765.1|(AC000375) F19K23.12 gene pr... +2    48  0.997     2
gi|5901924ref|NP_008949.1| centriole associated prote... +2    70  0.998     1
gi|4104246|gb|AAD01984.1|(AF034580) TSG118.1 [Mus mus... +3    67  0.998     1
gi|7688327|emb|CAB89882.1|(AL354632) hypothetical pro... +3    48  0.998     2
gi|7498698|pir||T19034hypothetical protein F09B9.4 - ... +2    48  0.998     2



Locally-aligned regions (HSPs) with respect to query sequence:

Locus_ID                Frame 3 Hits
gi|2121282             |               _____________________________      
gi|5281349             |                                    _________     
gi|6382301             |               _____________________________      
gi|6382100             |               _____________________________      
gi|6094021             |                 ______________________________   
gi|2506191             |                              _______________     
gi|133016              |                   _________________________      
gi|6856122             |                ____________________________      
gi|7295236             |                     ____________________________ 
gi|4104246             |                   _______________________________
gi|7688327             |                           ________________       
gi|7498698             |               ______________                     
                        __________________________________________________
Query sequence:        |          |           |          |          |     | 88
                       0         20          40         60         80


Locus_ID                Frame 2 Hits
gi|7705417             |                   _________________________      
gi|7271071             |                   ______________________________ 
gi|507353              |               ____________________________       
gi|5281349             |                   _________________              
gi|1731091             |                  _____________________________   
gi|1480112             |                   _________________________      
gi|6103005             |                  ______________________________  
gi|3158504             |               __________________________________ 
gi|4417274             |               __________________________________ 
gi|7292744             |                  ____________________________    
gi|1176743             |                   ______________________________ 
gi|7524762             |                   ___________________________    
gi|7292072             |                  _______________________________ 
gi|6322824             |      _______________________________________     
gi|7496472             |                  ____________________________    
gi|1438951             |                  ___________________________     
gi|7509508             |              ___________________________________ 
gi|7430121             |                     ____________________________ 
gi|7510715             |                     ___________________________  
gi|121957              |                  ______________________________  
gi|1945332             |                  ____________________________    
gi|2605825             |                     _______________________      
gi|7514263             |                ________________________________  
gi|6453446             |                  __________________________      
gi|7490722             |                       _________________________  
gi|7108562             |                  ______________________________  
gi|7500669             |                  ______________________________  
gi|7496473             |                  ____________________________    
gi|7297527             |                  _______________________________ 
gi|2668773             |                          _______________________ 
gi|2199512             |                  ______________________________  
gi|2128742             |                         _______________________  
gi|1899113             |                   ________________________       
gi|2957148             |                          ______________________  
gi|6728976             |                  _______________________________ 
gi|7487352             |               _______________________________    
gi|2160143             |                       __________________         
gi|5901924             |              ___________________________________ 
gi|7688327             |                     _________                    
gi|7498698             |                          _____________________   
                        __________________________________________________
Query sequence:        |          |           |          |          |     | 88
                       0         20          40         60         80


Locus_ID                Frame 1 Hits
gi|7509508             |                                              ___ 
gi|2506191             |                 ______                           
gi|7297527             |                                              ____
gi|2160143             |                                              ____
                        __________________________________________________
Query sequence:        |          |           |          |          |     | 88
                       0         20          40         60         80


Locus_ID                Frame -2 Hits
gi|7518452             |              ______________________________      
                        __________________________________________________
Query sequence:        |          |           |          |          |     | 88
                       0         20          40         60         80




Use the  and  icons to retrieve links to Entrez:

E = Retrieve Entrez links (e.g., Medline abstracts, FASTA-formatted sequence reports).

R = Retrieve links to Related sequences (neighbors).

Use the  icon (if present) to retrieve links to the Sequence Retrieval System (SRS).

Use the  icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .

Use the  icon (if present) to retrieve links to the Protein Data Bank database.


WARNING:  Descriptions of 48 database sequences were not reported due to the
          limiting value of parameter V = 50.



to_Entrezto_Relatedto_Related >gi|2121282|gb|AAC46122.1|  (AF000270) unknown [Borrelia burgdorferi]
            Length = 120

Frame  3 hits (HSPs):                          _____________________      
                        __________________________________________________
Database sequence:     |                    |                    |        | 120
                       0                   50                  100

  Plus Strand HSPs:

 Score = 68 (23.9 bits), Expect = 0.36, P = 0.31
 Identities = 16/50 (32%), Positives = 28/50 (56%), Frame = +3

Query:    87 HYNKRSRPIPN-KLNQEPQVKLKKKLTRPQLNRSRIIQNYKKKRKRKQNK 233
             H N+ S P     +NQ+ + K ++K    Q+ ++  IQN K+  K++Q K
Sbjct:    57 HENENSMPSKQVSVNQKQEQKREQKQEINQIQKNNTIQNQKRDIKQEQKK 106


to_Entrezto_Related >gi|7705417  ref|NP_057371.1| HP1-BP74 >gi|6523823|gb|AAF14871.1|AF113534_1
            (AF113534) HP1-BP74 protein [Homo sapiens]
            Length = 554

Frame  2 hits (HSPs):           ____                                      
                        __________________________________________________
Database sequence:     |             |            |             |         | 554
                       0           150          300           450

  Plus Strand HSPs:

 Score = 76 (26.8 bits), Expect = 0.70, P = 0.50
 Identities = 18/43 (41%), Positives = 26/43 (60%), Frame = +2

Query:   104 SSNSEQTKSGAPSQIKKKVNKTSTEPESNYSKLQKEKEKETKQ 232
             SS +EQ K G P   +K+ NK+S E + +     KEKEK+ K+
Sbjct:    90 SSEAEQPK-GEPENEEKEENKSSEETKKDEKDQSKEKEKKVKK 131


to_Entrezto_Relatedto_Related >gi|7271071|emb|CAB77657.1|  (AJ390520) hypothetical protein [Candida albicans]
            Length = 122

Frame  2 hits (HSPs):                            _______________________  
                        __________________________________________________
Database sequence:     |                    |                   |         | 122
                       0                   50                 100

  Plus Strand HSPs:

 Score = 65 (22.9 bits), Expect = 0.76, P = 0.53
 Identities = 18/55 (32%), Positives = 29/55 (52%), Frame = +2

Query:   104 SSNSEQTKSGAPSQI--KKKVNKTSTEPESN--YSKLQKEKEKETKQNRSFIKKI 256
             + +S  T SG   +   KK V     + E+N  + K   E EKE K+++S +KK+
Sbjct:    64 AGSSTSTPSGTDKKTSPKKLVTNAVNKVENNDDFKKFINEAEKEAKKSKSGLKKL 118


to_Entrezto_Relatedto_Related >gi|507353|gb|AAA60374.1|  (U05670) Lex2A [Haemophilus influenzae]
            Length = 101

Frame  2 hits (HSPs):               ________________________              
                        __________________________________________________
Database sequence:     |         |         |         |         |         || 101
                       0        20        40        60        80       100

  Plus Strand HSPs:

 Score = 63 (22.2 bits), Expect = 1.2, P = 0.71
 Identities = 17/48 (35%), Positives = 25/48 (52%), Frame = +2

Query:    83 ASLQ*TKSSNSEQTKSGAPSQIKKKVNKTSTEPESNYSKLQKEKEKET 226
             AS Q +K ++ + +K  A  Q K  +N TS   E    ++ K KEK T
Sbjct:    26 ASKQASKQASKQASKQ-ASKQAKSDLNSTSQSKEIILQEINKVKEKRT 72


to_Entrezto_Relatedto_Related >gi|5281349|gb|AAD41489.1|AF136454_1  (AF136454) lymphocyte enhancer binding
            factor 1 Lef1 [Danio rerio]
            Length = 365

Frame  3 hits (HSPs):                                                 __  
Frame  2 hits (HSPs):        ____                                         
                        __________________________________________________
Database sequence:     |                    |                   |         | 365
                       0                  150                 300

  Plus Strand HSPs:

 Score = 48 (16.9 bits), Expect = 1.6, Sum P(2) = 0.79
 Identities = 9/13 (69%), Positives = 11/13 (84%), Frame = +3

Query:   198 NYKKKRKRKQNKI 236
             NY KK+KRK+ KI
Sbjct:   337 NYGKKKKRKREKI 349

 Score = 41 (14.4 bits), Expect = 1.6, Sum P(2) = 0.79
 Identities = 12/28 (42%), Positives = 17/28 (60%), Frame = +2

Query:   107 SNSEQTKSGAPSQIKKK-VNKTSTEPESN 190
             S+SE+   G  ++IK   VN+T   P SN
Sbjct:    40 SHSEE--EGDLAEIKSSLVNETEISPNSN 66


to_Entrezto_Relatedto_Related >gi|1731091|sp|P54568|YQKE_BACSU  HYPOTHETICAL 9.1 KD PROTEIN IN GLNQ-ANSR
            INTERGENIC REGION >gi|7475334|pir||G69966 hypothetical protein yqkE
            - Bacillus subtilis >gi|1303982|dbj|BAA12637.1| (D84432) YqkE
            [Bacillus subtilis] >gi|2634798|emb|CAB14295.1| (Z99116) yqkE
            [Bacillus subtilis]
            Length = 74

Frame  2 hits (HSPs):     ______________________________________          
Annotated Domains:      _________________________________________________ 
                        __________________________________________________
Database sequence:     |            |             |            |          | 74
                       0           20            40           60
__________________

Annotated Domains:
   PRODOM               PD057093: YQKE_BACSU                     1..73
__________________


  Plus Strand HSPs:

 Score = 62 (21.8 bits), Expect = 1.6, P = 0.79
 Identities = 18/55 (32%), Positives = 28/55 (50%), Frame = +2

Query:   101 KSSNSEQTKSGAPSQIKKKVNKTSTEPESNYSKLQKE-------KEKETKQNRSF 244
             KS +  Q K G  S IK K+ +  ++ +    K QK        K+KE ++N+SF
Sbjct:     5 KSIDKHQLKDGLQSDIKAKLMEMKSQLKEEDEKRQKREKAEQIRKKKEIEKNKSF 59


to_Entrezto_Relatedto_Related >gi|1480112|emb|CAA67961.1|  (X99642) HP1-BP74 protein [Mus musculus]
            Length = 282

Frame  2 hits (HSPs):           ________                                  
                        __________________________________________________
Database sequence:     |        |        |        |        |        |     | 282
                       0       50      100      150      200      250

  Plus Strand HSPs:

 Score = 69 (24.3 bits), Expect = 1.6, P = 0.80
 Identities = 18/44 (40%), Positives = 27/44 (61%), Frame = +2

Query:   104 SSNSEQTKSGAPSQIKKKVN--KTSTEPESNYSKLQKEKEKETKQ 232
             SS +EQ K G P   +K+ N  K++ EP+ +     KEKEK+ K+
Sbjct:    48 SSEAEQPK-GEPESGEKEENNSKSAEEPKKDEKDQSKEKEKKVKK 91


to_Entrezto_Relatedto_Related >gi|6103005|emb|CAB59205.1|  (AJ250406) poly-glutamine tract-binding protein
            [Mus musculus]
            Length = 263

Frame  2 hits (HSPs):                        ___________                  
                        __________________________________________________
Database sequence:     |         |        |         |        |         |  | 263
                       0        50      100       150      200       250

  Plus Strand HSPs:

 Score = 68 (23.9 bits), Expect = 1.9, P = 0.84
 Identities = 13/50 (26%), Positives = 26/50 (52%), Frame = +2

Query:   101 KSSNSEQTKSGAPSQIKKKVNKTSTEPESNYSKLQKEKEKETKQNRSFIK 250
             KS  S +    +  +  +   K   E E NY K+ +E++++ ++ R+F K
Sbjct:   116 KSDRSHEKPDRSHEKADRNHEKNDRERERNYDKVDRERDRDRERERAFDK 165


to_Entrezto_Relatedto_Related >gi|3158504|gb|AAC17550.1|  (AF067613) F56D6.6 gene product [Caenorhabditis
            elegans]
            Length = 266

Frame  2 hits (HSPs):                         _____________               
                        __________________________________________________
Database sequence:     |         |        |         |        |        |   | 266
                       0        50      100       150      200      250

  Plus Strand HSPs:

 Score = 68 (23.9 bits), Expect = 1.9, P = 0.85
 Identities = 19/66 (28%), Positives = 38/66 (57%), Frame = +2

Query:    83 ASLQ*TKSSNSEQTKSGAP---SQIKKKVNKTSTEPESNYSKLQKEKEKETKQNRS---- 241
             A+LQ T +++S Q K+      ++ K+   K   E E +++K ++E EK+ K+++     
Sbjct:   122 AALQKTFNNSSAQMKANFDKNAAESKENFEKKKDEMEKDFNKTKEENEKKAKEDKKKAEG 181

Query:   242 FIKKII 259
             FI+ I+
Sbjct:   182 FIESIL 187


to_Entrezto_Relatedto_Related >gi|4417274|gb|AAD20399.1|  (AC007019) hypothetical protein [Arabidopsis
            thaliana]
            Length = 475

Frame  2 hits (HSPs):                      _______                        
                        __________________________________________________
Database sequence:     |               |               |               |  | 475
                       0             150             300             450

  Plus Strand HSPs:

 Score = 71 (25.0 bits), Expect = 2.0, P = 0.86
 Identities = 18/62 (29%), Positives = 36/62 (58%), Frame = +2

Query:    86 SLQ*TKSSNSEQTKSGAPSQIKK---KVNKTSTEPE-SNYSKLQKEKEKETKQNRSFIKK 253
             SL   K S  E+T++    +++K   K+ K +++ E + + KL++EK+K  K+    +K 
Sbjct:   185 SLPKKKMSKDEKTRAAEEKKLQKEQEKLQKAASKAEDAEHKKLEREKQKWAKEKDKALKC 244

Query:   254 II 259
             I+
Sbjct:   245 IV 246


to_Entrezto_Relatedto_Related >gi|6382301|gb|AAF07615.1|AE001579_44  (AE001579) hypothetical protein [Borrelia
            burgdorferi]
            Length = 352

Frame  3 hits (HSPs):                           ________                  
                        __________________________________________________
Database sequence:     |                     |                    |       | 352
                       0                   150                  300

  Plus Strand HSPs:

 Score = 69 (24.3 bits), Expect = 2.2, P = 0.89
 Identities = 16/50 (32%), Positives = 29/50 (58%), Frame = +3

Query:    87 HYNKRSRPIP-NKLNQEPQVKLKKKLTRPQLNRSRIIQNYKKKRKRKQNK 233
             H N+ S P   + +NQ+ + K ++K    Q+ ++  IQN K+  K++Q K
Sbjct:   176 HENENSMPSKQSSVNQKQEQKREQKQEINQIQKNNTIQNQKRDIKQEQKK 225


to_Entrezto_Relatedto_Related >gi|7292744|gb|AAF48140.1|  (AE003488) CG2779 gene product [Drosophila
            melanogaster]
            Length = 461

Frame  2 hits (HSPs):                                     _______         
                        __________________________________________________
Database sequence:     |                |               |               | | 461
                       0              150             300             450

  Plus Strand HSPs:

 Score = 70 (24.6 bits), Expect = 2.5, P = 0.91
 Identities = 19/50 (38%), Positives = 27/50 (54%), Frame = +2

Query:   101 KSSNSEQTKSGAPSQ---IKKKVNKTSTEPESNYSKLQKEKEKETKQNRS 241
             +S   EQ K  +  +    K+K +K S E + N SK +K+K KE K N S
Sbjct:   323 QSKEQEQKKPSSEEKEKDSKEKNDKDSKEKKDNDSKDKKDKSKEEKDNES 372


to_Entrezto_Relatedto_Related >gi|1176743|sp|P45920|YQBD_BACSU  HYPOTHETICAL 36.2 KD PROTEIN IN SPOIIIC-CWLA
            INTERGENIC REGION >gi|7475723|pir||G69946 phage-related protein
            homolog yqbD - Bacillus subtilis >gi|1217852|dbj|BAA06937.1|
            (D32216) ORF52 [Bacillus subtilis] >gi|1303743|dbj|BAA12399.1|
            (D84432) YqbD [Bacillus subtilis] >gi|2635060|emb|CAB14556.1|
            (Z99117) similar to phage-related protein [Bacillus subtilis]
            Length = 322

Frame  2 hits (HSPs):                                      _________      
Annotated Domains:      ________________________________________   _______
                        __________________________________________________
Database sequence:     |       |       |       |      |       |       |   | 322
                       0      50     100     150    200     250     300
__________________

Annotated Domains:
   DOMO                 DM06321:                                 1..222
   DOMO                 DM01492: PTSEIIBDOMAINSCYSTEINEPHOSPHORY 224..249
   PRODOM               PD024100: YQBD(2) O80202(1) XKDF(1)      1..254
   PRODOM               PD024100: YQBD(2) O80202(1) XKDF(1)      281..320
__________________


  Plus Strand HSPs:

 Score = 68 (23.9 bits), Expect = 2.5, P = 0.92
 Identities = 21/51 (41%), Positives = 29/51 (56%), Frame = +2

Query:   107 SNSEQTKS--GAPSQIKKKVNKTSTEPESNYSKLQKEKEKETKQNRSFIKKII 259
             ++ E TKS   A   IKK++     E E N  K  KEKE+ET++    +KK I
Sbjct:   231 TSEEVTKSIQEALEPIKKRLETLEKEEELN--KKDKEKEEETEKEGEKLKKAI 281


to_Entrezto_Related >gi|7524762  ref|NP_045764.1| ORF110 >gi|7452078|pir||T07192 hypothetical
            protein 110 - Chlorella vulgaris chloroplast
            >gi|2224355|dbj|BAA57839.1| (AB001684) ORF110 [Chlorella vulgaris]
            Length = 110

Frame  2 hits (HSPs):                              ______________________ 
                        __________________________________________________
Database sequence:     |        |        |        |        |         |    | 110
                       0       20       40       60       80       100

  Plus Strand HSPs:

 Score = 60 (21.1 bits), Expect = 2.6, P = 0.92
 Identities = 14/46 (30%), Positives = 25/46 (54%), Frame = +2

Query:   104 SSNSEQTKSGAPSQIKKKVNKTSTEPESNYSKLQKEKEKETKQNRS 241
             S++++   S  P+Q K+   K  T+  ++ S L+KE  K+T    S
Sbjct:    62 STSNQSLASQEPNQNKQDFRKAITQQNAHNSALEKEIAKQTANKTS 107


to_Entrezto_Relatedto_Related >gi|7292072|gb|AAF47485.1|  (AE003471) CG2199 gene product [Drosophila
            melanogaster]
            Length = 724

Frame  2 hits (HSPs):                      _____                          
                        __________________________________________________
Database sequence:     |          |         |          |         |        | 724
                       0        150       300        450       600

  Plus Strand HSPs:

 Score = 72 (25.3 bits), Expect = 2.6, P = 0.92
 Identities = 16/53 (30%), Positives = 29/53 (54%), Frame = +2

Query:   101 KSSNSEQTKSGAPSQIKKKVNKTSTEPESNYSKLQKEKEKETKQNRSFIKKII 259
             K S  ++ KSGA ++I  K  +T+   +    K +K KEK+T+   +   K++
Sbjct:   286 KESKEKEAKSGAKNKIDAKAKETNAVSQRKKPKEKKSKEKKTEIKCNVETKVV 338


to_Entrezto_Related >gi|6322824  ref|NP_012897.1| Large subunit of transcription factor tfIIE; Tfa1p
            >gi|549038|sp|P36100|T2EA_YEAST TRANSCRIPTION INITIATION FACTOR
            IIE, ALPHA SUBUNIT (TFIIE-ALPHA) (TRANSCRIPTION FACTOR A LARGE
            SUBUNIT) (FACTOR A 66 KD SUBUNIT) >gi|539375|pir||S37845
            transcription initiation factor IIE chain TFA1 - yeast
            (Saccharomyces cerevisiae) >gi|486027|emb|CAA81863.1| (Z28028) ORF
            YKL028w [Saccharomyces cerevisiae] >gi|607958|gb|AAA62665.1|
            (U12825) transcription factor TFIIE, large subunit [Saccharomyces
            cerevisiae]
            Length = 482

Frame  2 hits (HSPs):                         ________                    
                        __________________________________________________
Database sequence:     |               |               |              |   | 482
                       0             150             300            450

  Plus Strand HSPs:

 Score = 70 (24.6 bits), Expect = 2.6, P = 0.93
 Identities = 20/68 (29%), Positives = 30/68 (44%), Frame = +2

Query:    35 PKKXXXXXXXXXXXQLASLQ*TKSSNSEQTKSGAPSQIKKKVNKTSTEPESNYSKLQ-KE 211
             PKK            L +L  T   N    ++GA SQ    +N T+   E    +LQ ++
Sbjct:   221 PKKGSTMFRPGDSAPLPNLMGTALGNDSSRRAGANSQATLHINITTASDEVAQRELQERQ 280

Query:   212 KEKETKQN 235
              E++ KQN
Sbjct:   281 AEEKRKQN 288


to_Entrezto_Relatedto_Related >gi|6382100|gb|AAF07418.1|AE001575_19  (AE001575) conserved hypothetical protein
            [Borrelia burgdorferi]
            Length = 337

Frame  3 hits (HSPs):                          _________                  
                        __________________________________________________
Database sequence:     |                      |                     |     | 337
                       0                    150                   300

  Plus Strand HSPs:

 Score = 68 (23.9 bits), Expect = 2.7, P = 0.93
 Identities = 16/50 (32%), Positives = 28/50 (56%), Frame = +3

Query:    87 HYNKRSRPIPN-KLNQEPQVKLKKKLTRPQLNRSRIIQNYKKKRKRKQNK 233
             H N+ S P     +NQ+ + K ++K    Q+ ++  IQN K+  K++Q K
Sbjct:   161 HENENSMPSKQVSVNQKQEQKREQKQEINQIQKNNTIQNQKRDIKQEQKK 210


to_Entrezto_Relatedto_Related >gi|6094021|sp|O65729|RL18_CICAR  60S RIBOSOMAL PROTEIN L18
            >gi|3021348|emb|CAA06246.1| (AJ004961) ribosomal protein L18 [Cicer
            arietinum]
            Length = 183

Frame  3 hits (HSPs):      _______    ________                            
Annotated Domains:       _________________________________________________
                        __________________________________________________
Database sequence:     |             |             |            |         | 183
                       0            50           100          150
__________________

Annotated Domains:
   PFAM                 Ribosomal_L18e: Eukaryotic ribosomal pro 8..183
   PROSITE              RIBOSOMAL_L18E: Ribosomal protein L18e s 47..64
__________________


  Plus Strand HSPs:

 Score = 48 (16.9 bits), Expect = 2.7, Sum P(2) = 0.93
 Identities = 13/30 (43%), Positives = 19/30 (63%), Frame = +3

Query:   156 KLTRPQLNRSRIIQNYKKKRKRKQNKIGVL 245
             K+ RP L+ SR+I    K  + K+ KIGV+
Sbjct:    53 KVNRPPLSLSRLI----KYMQGKEGKIGVV 78

 Score = 31 (10.9 bits), Expect = 2.7, Sum P(2) = 0.93
 Identities = 9/24 (37%), Positives = 13/24 (54%), Frame = +3

Query:    96 KRSRPIPNKLNQEPQVKLKKKLTR 167
             KR+ P  N +  +  VKL + L R
Sbjct:    12 KRTSPKSNDIYLKLLVKLYRFLVR 35


to_Entrezto_Relatedto_Related >gi|7496472|pir||T19456  hypothetical protein C25D7.12 - Caenorhabditis elegans
            >gi|3874455|emb|CAB02780.1| (Z81039) C25D7.12 [Caenorhabditis
            elegans] >gi|3875917|emb|CAB02938.1| (Z81061) C25D7.12
            [Caenorhabditis elegans]
            Length = 341

Frame  2 hits (HSPs):                 _________                           
                        __________________________________________________
Database sequence:     |                     |                     |      | 341
                       0                   150                   300

  Plus Strand HSPs:

 Score = 68 (23.9 bits), Expect = 2.7, P = 0.93
 Identities = 19/56 (33%), Positives = 28/56 (50%), Frame = +2

Query:   101 KSSNSEQTKSGAPSQIKKKVNKT---------STEPESNYSKLQKEKEKETKQNRS 241
             KSS S  +  G PS+ KK  +K+            P S   KL+++K+K +K  RS
Sbjct:    98 KSSKSGHSSRGKPSKSKKSKSKSVRPLAVPGARVAPNSESKKLRRDKDKSSKSERS 153


to_Entrezto_Relatedto_Related >gi|1438951|gb|AAB04133.1|  (U61842) cutinase negative acting protein [Fusarium
            solani f. sp. pisi]
            Length = 507

Frame  2 hits (HSPs):      _____                                          
                        __________________________________________________
Database sequence:     |              |              |              |     | 507
                       0            150            300            450

  Plus Strand HSPs:

 Score = 70 (24.6 bits), Expect = 2.8, P = 0.94
 Identities = 17/48 (35%), Positives = 26/48 (54%), Frame = +2

Query:    98 TKSSNSEQTKSGAPSQIKKKVNKTS--TEPESNYSKLQKEKEKETKQN 235
             TK+ + E  KS A   +K+K +K     EPES  S+ + E E E+  +
Sbjct:    33 TKAKSKELAKSAAKKLVKEKDSKKKKKAEPESESSESESESEAESSDD 80


to_Entrezto_Relatedto_Related >gi|7509508|pir||T26569  hypothetical protein Y26D4A.9 - Caenorhabditis elegans
            >gi|5824721|emb|CAB54347.1| (AL110478) predicted using Genefinder
            [Caenorhabditis elegans]
            Length = 740

Frame  2 hits (HSPs):               _____                                 
Frame  1 hits (HSPs):                                           _         
                        __________________________________________________
Database sequence:     |          |         |         |         |         | 740
                       0        150       300       450       600

  Plus Strand HSPs:

 Score = 61 (21.5 bits), Expect = 2.8, Sum P(2) = 0.94
 Identities = 19/59 (32%), Positives = 28/59 (47%), Frame = +2

Query:    80 LASLQ*TKSSNSEQTKSGAPSQIKKKVNKTSTEPESNYSKLQKEKEKETKQNRSFIKKI 256
             LA ++      SE+ K    +  K KV KT  E E    + QK KE+  K+    +KK+
Sbjct:   185 LAKIENKYKKESEEVKKTGKN--KDKVEKTKEEVEKAKEEFQKVKEEFQKEVEK-VKKV 240

 Score = 32 (11.3 bits), Expect = 2.8, Sum P(2) = 0.94
 Identities = 5/6 (83%), Positives = 5/6 (83%), Frame = +1

Query:   244 YQKDHP 261
             Y KDHP
Sbjct:   602 YPKDHP 607


to_Entrezto_Relatedto_Related >gi|7430121|pir||C70437  ATP synthase F0 subunit b - Aquifex aeolicus
            >gi|2983928|gb|AAC07477.1| (AE000746) ATP synthase F0 subunit b
            [Aquifex aeolicus]
            Length = 144

Frame  2 hits (HSPs):                                   _________________ 
                        __________________________________________________
Database sequence:     |                 |                |               | 144
                       0                50              100

  Plus Strand HSPs:

 Score = 62 (21.8 bits), Expect = 2.8, P = 0.94
 Identities = 18/48 (37%), Positives = 24/48 (50%), Frame = +2

Query:   116 EQTKSGAPSQIKKKVNKTSTEPESNYSKLQKEKEKETKQNRSFIKKII 259
             EQT+     +IKK V +  T  E    KL+K   KE  Q    +KKI+
Sbjct:    96 EQTEKQTEEEIKKAVEEIRTSLEEEKKKLEKSV-KEIAQE--IVKKIL 140


to_Entrezto_Relatedto_Related >gi|7510715|pir||T27534  hypothetical protein ZC376.8 - Caenorhabditis elegans
            >gi|3881414|emb|CAB00885.1| (Z77136) cDNA EST yk311e10.3 comes from
            this gene~cDNA EST yk311e10.5 comes from this gene [Caenorhabditis
            elegans]
            Length = 291

Frame  2 hits (HSPs):                _________                            
                        __________________________________________________
Database sequence:     |        |        |       |        |       |       | 291
                       0       50      100     150      200     250

  Plus Strand HSPs:

 Score = 67 (23.6 bits), Expect = 2.8, P = 0.94
 Identities = 17/46 (36%), Positives = 26/46 (56%), Frame = +2

Query:   116 EQTKSGAPSQIKKKVNKTSTEPESNYSKLQKEKEKETKQNRSFIKK 253
             E+ K   P++ KK   K  ++ E +  +  KEKEKE K N++  KK
Sbjct:    82 EEKKPEEPAKSKKSEKKEKSKNEGSKKEEDKEKEKE-KSNKAEDKK 126


to_Entrezto_Relatedto_Related >gi|121957|sp|P10156|H1_TETTH  HISTONE H1 >gi|84354|pir||A26490 histone H1,
            macronuclear - Tetrahymena thermophila >gi|161794|gb|AAA30119.1|
            (M14854) histone H1 [Tetrahymena thermophila]
            Length = 164

Frame  2 hits (HSPs):                                 __________________  
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |              |               |              |    | 164
                       0             50             100            150
__________________

Annotated Domains:
   DOMO                 DM07985:                                 1..162
   Entrez               phosphorylation site                     47
   Entrez               phosphorylation site                     54
   PRODOM               PD000540: H1(18) O76786(11) TONB(10)     22..161
__________________


  Plus Strand HSPs:

 Score = 63 (22.2 bits), Expect = 2.9, P = 0.94
 Identities = 18/55 (32%), Positives = 29/55 (52%), Frame = +2

Query:   101 KSSNSEQTKSGAPSQIKKKV---NKTST-EPESNYSKLQKEKEKETKQNRSFIKK 253
             K+ N  +  +  P   KK+V   NKT+  E + ++   +KE +KETK  +   KK
Sbjct:   102 KAINPGKKAAAQPKSTKKEVKKDNKTAKKETKKDHKPAKKEAKKETKPAKKDAKK 156


to_Entrezto_Relatedto_Related >gi|1945332|emb|CAA97180.1|  (Z72946) ORF YGR159c [Saccharomyces cerevisiae]
            Length = 188

Frame  2 hits (HSPs):            _____________________                    
                        __________________________________________________
Database sequence:     |             |            |            |          | 188
                       0            50          100          150

  Plus Strand HSPs:

 Score = 64 (22.5 bits), Expect = 2.9, P = 0.95
 Identities = 16/50 (32%), Positives = 32/50 (64%), Frame = +2

Query:    98 TKSSNSEQTKSGAPSQIKKKVNKTSTEPESNYSKLQKEKEK--ETKQNRS 241
             ++SS+S  + S + ++ KK+ +K S+   S+ S  ++E+E+  ETK+  S
Sbjct:    64 SESSSSSSSDSESEAETKKEESKDSSSSSSDSSSDEEEEEEKEETKKEES 113

 Score = 61 (21.5 bits), Expect = 6.3, P = 1.0
 Identities = 15/49 (30%), Positives = 29/49 (59%), Frame = +2

Query:    98 TKSSNSEQTKSGAPSQIKKKVNKTSTEPESNYSKLQ-KEKEKETKQNRS 241
             + SS+S +++S + S+ +   + +S++ ES+ S     E E ETK+  S
Sbjct:    37 SSSSSSSESESESESESESSSSSSSSDSESSSSSSSDSESEAETKKEES 85


to_Entrezto_Relatedto_Related >gi|2605825|gb|AAC38055.1|  (AF028006) ATP synthase b subunit [Methanosarcina
            barkeri]
            Length = 386

Frame  2 hits (HSPs):                                   ______            
                        __________________________________________________
Database sequence:     |                   |                  |           | 386
                       0                 150                300

  Plus Strand HSPs:

 Score = 68 (23.9 bits), Expect = 3.2, P = 0.96
 Identities = 15/40 (37%), Positives = 25/40 (62%), Frame = +2

Query:   113 SEQTKSGAPSQIKKKVNKTSTEPESNYSKLQKEKEKETKQ 232
             +EQ +S + S+ + K NK  TEP++  +K + E E E +Q
Sbjct:   250 NEQPESKSKSEPQTKNNKAKTEPQTKNNKPRFENEPEAEQ 289


to_Entrezto_Relatedto_Related >gi|7514263|pir||G70331  anti sigma factor FlgM - Aquifex aeolicus
            >gi|2983031|gb|AAC06641.1| (AE000685) anti sigma factor FlgM
            [Aquifex aeolicus]
            Length = 88

Frame  2 hits (HSPs):          ________________________________           
                        __________________________________________________
Database sequence:     |          |           |          |          |     | 88
                       0         20          40         60         80

  Plus Strand HSPs:

 Score = 59 (20.8 bits), Expect = 3.3, P = 0.96
 Identities = 17/55 (30%), Positives = 33/55 (60%), Frame = +2

Query:    89 LQ*TKSSNSEQTKSGAPSQIKKKVNKTSTEPESNYSKLQ-KEKEKETKQNRSFIKK 253
             L+  K  N+EQ +SG  ++I+ KV  +    E + + ++ K+ EK+ K+ +  I+K
Sbjct:    15 LETEKRKNTEQKESGT-NKIEDKVTLSKIAQELSKNDVEEKDLEKKVKELKEKIEK 69


to_Entrezto_Relatedto_Related >gi|2506191|sp|P19619|ANX1_PIG  ANNEXIN I (LIPOCORTIN I) (CALPACTIN II)
            (CHROMOBINDIN 9) (P35) (PHOSPHOLIPASE A2 INHIBITORY PROTEIN)
            >gi|1165145|emb|CAA64477.1| (X95108) annexin I [Sus scrofa]
            Length = 341

Frame  3 hits (HSPs):                                   ____              
Frame  1 hits (HSPs):                      __                             
Annotated Domains:       __  _____________________  ______________________
                        __________________________________________________
Database sequence:     |                     |                     |      | 341
                       0                   150                   300
__________________

Annotated Domains:
   Entrez               Repetitive region: ANNEXIN.              46..106
   Entrez               Repetitive region: ANNEXIN.              118..178
   Entrez               Repetitive region: ANNEXIN.              202..262
   Entrez               Repetitive region: ANNEXIN.              277..337
   Entrez               modified site: INTERCHAIN CROSS-LINK (BY 14
   Entrez               phosphorylation site: (BY EGFR).         16
   Entrez               phosphorylation site: (BY PKC) (BY SIMIL 19
   PFAM                 annexin: Annexin                         39..106
   PFAM                 annexin: Annexin                         111..178
   PFAM                 annexin: Annexin                         195..262
   PFAM                 annexin: Annexin                         270..337
   PROSITE              ANNEXIN: Annexins repeated domain signat 126..178
   PROSITE              ANNEXIN: Annexins repeated domain signat 210..262
   PROSITE              ANNEXIN: Annexins repeated domain signat 285..337
__________________


  Plus Strand HSPs:

 Score = 50 (17.6 bits), Expect = 3.3, Sum P(2) = 0.96
 Identities = 10/25 (40%), Positives = 13/25 (52%), Frame = +3

Query:   162 TRPQLNRSRIIQNYKKKRKRKQNKI 236
             TR  L+  R+ Q Y K  K   NK+
Sbjct:   222 TRSYLHLRRVFQKYSKYSKHDMNKV 246

 Score = 35 (12.3 bits), Expect = 3.3, Sum P(2) = 0.96
 Identities = 6/11 (54%), Positives = 9/11 (81%), Frame = +1

Query:    91 TINEVVQFRTN 123
             T+NE++  RTN
Sbjct:   131 TLNEILASRTN 141


to_Entrezto_Relatedto_Related >gi|133016|sp|P17937|RL7A_SCHPO  60S RIBOSOMAL PROTEIN L7-A >gi|71123|pir||R5BY7
            ribosomal protein L7 - fission yeast (Schizosaccharomyces pombe)
            >gi|295935|emb|CAA37639.1| (X53575) ribosomal protein L7
            [Schizosaccharomyces pombe] >gi|6692013|emb|CAB65807.1| (AL136235)
            60s ribosomal protein L7-a.2/L8B [Schizosaccharomyces pombe]
            Length = 249

Frame  3 hits (HSPs):    _________                                        
Annotated Domains:        ________________________________________________
                        __________________________________________________
Database sequence:     |         |         |         |         |          | 249
                       0        50       100       150       200
__________________

Annotated Domains:
   DOMO                 DM02153: RATRIBOSOMALPROTEINL7           32..248
   PFAM                 Ribosomal_L30: Ribosomal protein L30p/L7 88..140
   PRODOM               PD005715: RL7(6) RL7A(2) RL7B(2)         15..87
   PRODOM               PD003673: RL30(7) RL7(6) RL7A(2)         89..246
   PROSITE              RIBOSOMAL_L30: Ribosomal protein L30 sig 108..140
__________________


  Plus Strand HSPs:

 Score = 65 (22.9 bits), Expect = 3.6, P = 0.97
 Identities = 13/42 (30%), Positives = 23/42 (54%), Frame = +3

Query:   108 PIPNKLNQEPQVKLKKKLTRPQLNRSRIIQNYKKKRKRKQNK 233
             P+  +   EP+V LKK+    +  + R+ Q   KK  +K+N+
Sbjct:     6 PVVQQTMLEPEVLLKKRKVNERTRKERVEQAIAKKEAQKKNR 47


to_Entrezto_Relatedto_Related >gi|6453446|emb|CAB61367.1|  (AL133039) hypothetical protein [Homo sapiens]
            Length = 163

Frame  2 hits (HSPs):                                      ______________ 
                        __________________________________________________
Database sequence:     |               |              |              |    | 163
                       0              50            100            150

  Plus Strand HSPs:

 Score = 62 (21.8 bits), Expect = 3.7, P = 0.97
 Identities = 13/44 (29%), Positives = 25/44 (56%), Frame = +2

Query:   101 KSSNSEQTKSGAPSQIKKKVNKTSTEPESNYSKLQKEKEKETKQ 232
             K  + ++ K     + KKK  K ST+   + S+ +K+K+K+T +
Sbjct:   117 KKKSDKRKKDKEKKEKKKKAKKASTKDSESPSQKKKKKKKKTAE 160


to_Entrezto_Relatedto_Related >gi|7490722|pir||T37930  hypothetical lysine-rich protein - fission yeast
            (Schizosaccharomyces pombe) >gi|5731935|emb|CAB52566.1| (AL109820)
            hypothetical lysine-rich protein [Schizosaccharomyces pombe]
            Length = 224

Frame  2 hits (HSPs):                                  __________         
                        __________________________________________________
Database sequence:     |          |           |          |          |     | 224
                       0         50         100        150        200

  Plus Strand HSPs:

 Score = 64 (22.5 bits), Expect = 4.0, P = 0.98
 Identities = 18/42 (42%), Positives = 27/42 (64%), Frame = +2

Query:   128 SGAPSQIKK-KVNKTSTEPESNYSKLQKEKEKETKQNRSFIKK 253
             S +P   KK KV KTS +  S   K +K+KEK+ K+++  +KK
Sbjct:   141 SVSPVSSKKVKVRKTSGKESSKREKSKKKKEKKEKKDK--LKK 181


to_Entrezto_Relatedto_Related >gi|7518452|pir||C71227  hypothetical protein PH0077 - Pyrococcus horikoshii
            >gi|3256463|dbj|BAA29146.1| (AP000001) 111aa long hypothetical
            protein [Pyrococcus horikoshii]
            Length = 111

Frame -2 hits (HSPs):                              _______________________
                        __________________________________________________
Database sequence:     |                      |                     |     | 111
                       0                     50                   100

  Minus Strand HSPs:

 Score = 58 (20.4 bits), Expect = 4.2, P = 0.98
 Identities = 17/51 (33%), Positives = 24/51 (47%), Frame = -2

Query:   230 VLFPFPFLFVVLNNSTPVQLRSC*LFF*FDLGLLI*FVRNWTTSFIVMKLI 78
             + FPFP + V     TP  L S  LF    L   I    +W   F+V+++I
Sbjct:    63 ISFPFPLINVTCPTLTP--LTSVILFLFPGLNTPILIPNSWAFMFLVLRII 111


to_Entrezto_Relatedto_Related >gi|7108562|gb|AAF36478.1|AF128264_3  (AF128264) unknown [Streptococcus
            gordonii]
            Length = 81

Frame  2 hits (HSPs):                    ________________________________ 
                        __________________________________________________
Database sequence:     |           |            |           |           | | 81
                       0          20           40          60          80

  Plus Strand HSPs:

 Score = 58 (20.4 bits), Expect = 4.2, P = 0.98
 Identities = 12/51 (23%), Positives = 27/51 (52%), Frame = +2

Query:   101 KSSNSEQTKSGAPSQIKKKVNKTSTEPESNYSKLQKEKEKETKQNRSFIKK 253
             ++++++ T+  + S+ ++K   TS E +++       KE   K N  F +K
Sbjct:    29 QANSNKPTEESSSSKSEEKTKSTSKEEKTSKETQSSSKESGEKDNSGFSEK 79


to_Entrezto_Relatedto_Related >gi|7500669|pir||T33457  hypothetical protein F36H12.3 - Caenorhabditis elegans
            >gi|3329623|gb|AAC26930.1| (AF078790) F36H12.3 gene product
            [Caenorhabditis elegans]
            Length = 335

Frame  2 hits (HSPs):           ________                                  
                        __________________________________________________
Database sequence:     |                      |                     |     | 335
                       0                    150                   300

  Plus Strand HSPs:

 Score = 66 (23.2 bits), Expect = 4.4, P = 0.99
 Identities = 16/51 (31%), Positives = 30/51 (58%), Frame = +2

Query:   101 KSSNSEQTKSGAPSQIKKKVNKTSTEPESNYSKLQKEKEKETKQNRSFIKK 253
             KS  SE+ +     + KK+ +K S   +S+  + +KE++KE K+++   KK
Sbjct:    55 KSKKSEKKEEPKKEEEKKEKSKKSEGKKSDKKEEKKEEKKEEKEDKKEEKK 105


to_Entrezto_Relatedto_Related >gi|6856122|gb|AAF29790.1|AF169008_17  (AF169008) ORF18/36 kDa [Borrelia
            burgdorferi]
            Length = 339

Frame  3 hits (HSPs):                          _________                  
                        __________________________________________________
Database sequence:     |                     |                      |     | 339
                       0                   150                    300

  Plus Strand HSPs:

 Score = 66 (23.2 bits), Expect = 4.4, P = 0.99
 Identities = 17/53 (32%), Positives = 31/53 (58%), Frame = +3

Query:    90 YN--KRSRPIPNK---LNQEPQVKLKKKLTRPQLNRSRIIQNYKKKRKRKQNK 233
             YN  + +  +PNK   +NQ+ + K ++K    Q+ ++  IQN K+  K++Q K
Sbjct:   160 YNNYENANSMPNKQVSVNQKQEQKREQKQEINQIQKNNTIQNQKRDIKQEQKK 212


to_Entrezto_Relatedto_Related >gi|7496473|pir||T19449  hypothetical protein C25D7.2 - Caenorhabditis elegans
            >gi|3874448|emb|CAB02773.1| (Z81039) cDNA EST yk364a11.3 comes from
            this gene~cDNA EST yk364a11.5 comes from this gene [Caenorhabditis
            elegans]
            Length = 286

Frame  2 hits (HSPs):           ___________                               
                        __________________________________________________
Database sequence:     |        |        |        |       |        |      | 286
                       0       50      100      150     200      250

  Plus Strand HSPs:

 Score = 65 (22.9 bits), Expect = 4.5, P = 0.99
 Identities = 19/56 (33%), Positives = 28/56 (50%), Frame = +2

Query:   101 KSSNSEQTKSGAPSQIKKKVNKTSTE---------PESNYSKLQKEKEKETKQNRS 241
             KSS S     G PS+ KK  +K+            P+S   KL+++K+K +K  RS
Sbjct:    51 KSSKSGHLSRGKPSKSKKSKSKSVRPLAVPGARGAPKSESKKLRRDKDKSSKSERS 106


to_Entrezto_Relatedto_Related >gi|7297527|gb|AAF52782.1|  (AE003625) CG17855 gene product [Drosophila
            melanogaster]
            Length = 292

Frame  2 hits (HSPs):         __________                                  
Frame  1 hits (HSPs):                                       __            
                        __________________________________________________
Database sequence:     |        |       |        |        |       |       | 292
                       0       50     100      150      200     250

  Plus Strand HSPs:

 Score = 51 (18.0 bits), Expect = 4.5, Sum P(2) = 0.99
 Identities = 13/52 (25%), Positives = 26/52 (50%), Frame = +2

Query:   101 KSSNSEQTKSGAPSQIKKKVNKTSTEPESNYSKLQKEKEKETKQNRSFIKKI 256
             ++S S  T +    + K  V +   E +     LQK K+K  K + ++++K+
Sbjct:    39 RASASHSTNAAINVEAKIMVFQLEEERDRLVETLQKHKKKYNKLHDAYLEKV 90

 Score = 31 (10.9 bits), Expect = 4.5, Sum P(2) = 0.99
 Identities = 4/7 (57%), Positives = 7/7 (100%), Frame = +1

Query:   244 YQKDHPG 264
             Y++D+PG
Sbjct:   212 YEEDYPG 218


to_Entrezto_Relatedto_Related >gi|2668773|gb|AAB88624.1|  (AF035681) nonstructural protein C [ovine
            parainfluenza virus 3]
            Length = 133

Frame  2 hits (HSPs):    ________________                                 
                        __________________________________________________
Database sequence:     |                  |                  |            | 133
                       0                 50                100

  Plus Strand HSPs:

 Score = 59 (20.8 bits), Expect = 5.2, P = 0.99
 Identities = 12/40 (30%), Positives = 21/40 (52%), Frame = +2

Query:   140 SQIKKKVNKTSTEPESNYSKLQKEKEKETKQNRSFIKKII 259
             +QI KKV  T TE +     L ++  K++ +   +  KI+
Sbjct:     6 AQIPKKVQSTMTESQPEKQNLAQQSSKQSPKQPKYTGKIV 45


to_Entrezto_Relatedto_Related >gi|2199512|gb|AAB61638.1|  (U81504) beta-3A-adaptin subunit of the AP-3 complex
            [Homo sapiens]
            Length = 1094

Frame  2 hits (HSPs):                                     ____            
                        __________________________________________________
Database sequence:     |      |      |      |      |      |      |     |  | 1094
                       0    150    300    450    600    750    900  1050

  Plus Strand HSPs:

 Score = 71 (25.0 bits), Expect = 5.2, P = 0.99
 Identities = 17/52 (32%), Positives = 32/52 (61%), Frame = +2

Query:    98 TKSSNSEQTKSGAPSQIKKKVNKTSTEPESNYSKLQKEKEKETKQNRSFIKK 253
             T  S+++++ S   S    + +++  E ES   ++ KEKEK+TKQ+R+ + K
Sbjct:   764 TSDSSNDESSSIEDSSSDSE-SESEPESESESRRVTKEKEKKTKQDRTPLTK 814


to_Entrezto_Relatedto_Related >gi|2128742|pir||G64454  hypothetical protein MJ1240 - Methanococcus jannaschii
            >gi|1591872|gb|AAB99245.1| (U67564) M. jannaschii predicted coding
            region MJ1240 [Methanococcus jannaschii]
            Length = 97

Frame  2 hits (HSPs):                              ____________________   
                        __________________________________________________
Database sequence:     |         |          |         |         |         | 97
                       0        20         40        60        80

  Plus Strand HSPs:

 Score = 57 (20.1 bits), Expect = 5.3, P = 1.0
 Identities = 13/38 (34%), Positives = 24/38 (63%), Frame = +2

Query:   137 PSQIKKKVNKTSTEPESNYSKLQKEKEKETKQNRSFIK 250
             PS++ K++++   E     S ++KEK KE K  ++F+K
Sbjct:    55 PSKLLKELSEAIEEEIKAKSDIEKEKAKE-KVKKAFVK 91


to_Entrezto_Relatedto_Related >gi|1899113|gb|AAC56996.1|  (U86774) tat protein [Human immunodeficiency virus
            type 1]
            Length = 59

Frame  2 hits (HSPs):                _________________________________    
                        __________________________________________________
Database sequence:     |                |                |                | 59
                       0               20               40

  Plus Strand HSPs:

 Score = 57 (20.1 bits), Expect = 5.3, P = 1.0
 Identities = 16/41 (39%), Positives = 20/41 (48%), Frame = +2

Query:   104 SSNSEQTKSGAPSQIKKKVNKTSTEPESNYSKLQKEKEKET 226
             S NSE  +S  P Q      + ST PE   SK + E + ET
Sbjct:    17 SQNSEDHQSPIPKQSLPHTQRVSTGPEE--SKKEVESKAET 55


to_Entrezto_Relatedto_Related >gi|2957148|gb|AAC05708.1|  (L47325) emm32 [Streptococcus pyogenes]
            Length = 99

Frame  2 hits (HSPs):                            ____________________     
                        __________________________________________________
Database sequence:     |         |         |         |         |          | 99
                       0        20        40        60        80

  Plus Strand HSPs:

 Score = 57 (20.1 bits), Expect = 5.3, P = 1.0
 Identities = 13/38 (34%), Positives = 20/38 (52%), Frame = +2

Query:   140 SQIKKKVNKTSTEPESNYSKLQKEKEKETKQNRSFIKK 253
             +Q  +K+ K   E      KL KEKE+ T++N    K+
Sbjct:    52 TQENEKLTKEKEELTQENEKLTKEKEELTQENEKLTKE 89


to_Entrezto_Relatedto_Related >gi|7295236|gb|AAF50558.1|  (AE003559) CG14835 gene product [Drosophila
            melanogaster]
            Length = 152

Frame  3 hits (HSPs):                             _________________       
                        __________________________________________________
Database sequence:     |                |               |                || 152
                       0               50             100              150

  Plus Strand HSPs:

 Score = 60 (21.1 bits), Expect = 5.4, P = 1.0
 Identities = 16/48 (33%), Positives = 30/48 (62%), Frame = +3

Query:   117 NKLNQEPQVKLKKKLTRPQLNRSRIIQ-NYKKKRKRKQNKIGVLSKRSS 260
             N L+ + QV +++  +  Q ++ RI + N K  RK++Q K+G  S++ S
Sbjct:    83 NVLSPQ-QVTVQRTRSDVQSSKRRICRGNAKTHRKKRQQKMGATSRKRS 130


to_Entrezto_Relatedto_Related >gi|6728976|gb|AAF26974.1|AC018363_19  (AC018363) unknown protein [Arabidopsis
            thaliana]
            Length = 313

Frame  2 hits (HSPs):                 ________                ____        
                        __________________________________________________
Database sequence:     |       |       |       |       |       |       |  | 313
                       0      50     100     150     200     250     300

  Plus Strand HSPs:

 Score = 49 (17.2 bits), Expect = 5.4, Sum P(2) = 1.0
 Identities = 17/42 (40%), Positives = 19/42 (45%), Frame = +2

Query:   101 KSSNSEQTKSGAPSQIKKKVNKTSTEPESNYSKLQKEKEKET 226
             KSSNS QT SG P    +       E E   SK   E+ K T
Sbjct:    94 KSSNS-QTSSGLPPNFFENREPARAEVEPAKSK-NLEQSKHT 133

 Score = 33 (11.6 bits), Expect = 5.4, Sum P(2) = 1.0
 Identities = 5/15 (33%), Positives = 12/15 (80%), Frame = +2

Query:   212 KEKETKQNRSFIKKI 256
             +E+E ++ RS+ +K+
Sbjct:   244 EEEEQREQRSYKEKV 258


to_Entrezto_Relatedto_Related >gi|7487352|pir||T08567  hypothetical protein T22F8.90 - Arabidopsis thaliana
            >gi|4914431|emb|CAB43634.1| (AL050351) hypothetical protein
            [Arabidopsis thaliana] >gi|7270902|emb|CAB80582.1| (AL161594)
            hypothetical protein [Arabidopsis thaliana]
            Length = 277

Frame  2 hits (HSPs):                           ___________               
                        __________________________________________________
Database sequence:     |        |        |        |        |        |     | 277
                       0       50      100      150      200      250

  Plus Strand HSPs:

 Score = 64 (22.5 bits), Expect = 5.5, P = 1.0
 Identities = 17/53 (32%), Positives = 31/53 (58%), Frame = +2

Query:    86 SLQ*TKSSNSEQTKSGAPSQIKKKVNKTSTEPESNYSKLQKEK-EKETKQNRS 241
             S+   K+  +E+ +S   S++KK V +  T+   +  K+++ K EK TKQ+ S
Sbjct:   138 SITENKAKENEEKQSITESRVKKSVTEKKTKRIISEKKVKQSKPEKLTKQSTS 190


to_Entrezto_Relatedto_Related >gi|2160143|gb|AAB60765.1|  (AC000375) F19K23.12 gene product [Arabidopsis
            thaliana]
            Length = 295

Frame  2 hits (HSPs):      _____                                          
Frame  1 hits (HSPs):                                         _           
                        __________________________________________________
Database sequence:     |        |       |        |       |        |       | 295
                       0       50     100      150     200      250

  Plus Strand HSPs:

 Score = 48 (16.9 bits), Expect = 6.0, Sum P(2) = 1.0
 Identities = 9/30 (30%), Positives = 18/30 (60%), Frame = +2

Query:   125 KSGAPSQIKKKVNKTSTEPESNYSKLQKEK 214
             +S  P++++   + T+T P+ N+  L  EK
Sbjct:    19 RSYGPTRVRVTCSVTTTNPQLNHENLVVEK 48

 Score = 33 (11.6 bits), Expect = 6.0, Sum P(2) = 1.0
 Identities = 5/6 (83%), Positives = 6/6 (100%), Frame = +1

Query:   247 QKDHPG 264
             +KDHPG
Sbjct:   226 RKDHPG 231


to_Entrezto_Related >gi|5901924  ref|NP_008949.1| centriole associated protein
            >gi|3435244|gb|AAC32373.1| (AF083322) centriole associated protein
            CEP110 [Homo sapiens]
            Length = 994

Frame  2 hits (HSPs):           ____                                      
                        __________________________________________________
Database sequence:     |       |       |      |       |      |       |    | 994
                       0     150     300    450     600    750     900

  Plus Strand HSPs:

 Score = 70 (24.6 bits), Expect = 6.0, P = 1.0
 Identities = 21/60 (35%), Positives = 33/60 (55%), Frame = +2

Query:    77 QLASLQ*TKSSNSEQTKSGAPSQIKKKVNKTSTEPESNYSKLQKEKEKETKQNRSFIKKI 256
             QL SLQ   + + EQ K     +I K++NK     +S++  L K+KEK T++ +   K I
Sbjct:   166 QLRSLQ-ADAKDLEQHKI-KQEEILKEINKIVAAKDSDFQCLSKKKEKLTEELQKLQKDI 223


to_Entrezto_Relatedto_Related >gi|4104246|gb|AAD01984.1|  (AF034580) TSG118.1 [Mus musculus]
            Length = 530

Frame  3 hits (HSPs):                                _____                
                        __________________________________________________
Database sequence:     |              |             |             |       | 530
                       0            150           300           450

  Plus Strand HSPs:

 Score = 67 (23.6 bits), Expect = 6.1, P = 1.0
 Identities = 20/52 (38%), Positives = 30/52 (57%), Frame = +3

Query:   108 PIPN-KLNQEPQVKLKKKLTRPQLNRSRIIQNYKKKRKRKQNKIGVLSKRSSW 263
             PI + K   + +VK KKK+ +P +     ++  KKK+KRK+N  GV  K   W
Sbjct:   310 PIDSPKAPGKKKVKSKKKVEQP-VGEGLAVKRKKKKKKRKEN--GV--KEDPW 357


to_Entrezto_Relatedto_Related >gi|7688327|emb|CAB89882.1|  (AL354632) hypothetical protein
            [Schizosaccharomyces pombe]
            Length = 273

Frame  3 hits (HSPs):                                     ______          
Frame  2 hits (HSPs):                            ____                     
                        __________________________________________________
Database sequence:     |        |         |        |        |        |    | 273
                       0       50       100      150      200      250

  Plus Strand HSPs:

 Score = 48 (16.9 bits), Expect = 6.2, Sum P(2) = 1.0
 Identities = 12/26 (46%), Positives = 15/26 (57%), Frame = +3

Query:   150 KKKLTRPQLNRSRIIQNYKKKRKRKQ 227
             KKK T P   R R  QN +KK + K+
Sbjct:   192 KKKSTEPLTKRQR--QNQQKKLRAKE 215

 Score = 32 (11.3 bits), Expect = 6.2, Sum P(2) = 1.0
 Identities = 7/14 (50%), Positives = 8/14 (57%), Frame = +2

Query:   116 EQTKSGAPSQIKKK 157
             EQ  S  PS +K K
Sbjct:   141 EQKHSTTPSSLKMK 154


to_Entrezto_Relatedto_Related >gi|7498698|pir||T19034  hypothetical protein F09B9.4 - Caenorhabditis elegans
            >gi|3874058|emb|CAB01718.1| (Z78536) F09B9.4 [Caenorhabditis
            elegans] >gi|3875563|emb|CAA90059.1| (Z49887) F09B9.4
            [Caenorhabditis elegans]
            Length = 251

Frame  3 hits (HSPs):    ______                                           
Frame  2 hits (HSPs):                              _______                
                        __________________________________________________
Database sequence:     |         |         |         |         |         || 251
                       0        50       100       150       200       250

  Plus Strand HSPs:

 Score = 48 (16.9 bits), Expect = 6.3, Sum P(2) = 1.0
 Identities = 13/36 (36%), Positives = 20/36 (55%), Frame = +2

Query:   140 SQIKKKVNKTSTEPESNYSKLQKEKEKETKQNRSFI 247
             S ++K+  K   + ES+ S+  KE E E K N + I
Sbjct:   137 SVLEKQAGKKGDD-ESSSSEEDKEDEDEKKDNSTVI 171

 Score = 31 (10.9 bits), Expect = 6.3, Sum P(2) = 1.0
 Identities = 8/24 (33%), Positives = 14/24 (58%), Frame = +3

Query:    84 LHYNKRSRPIPNKLNQEPQVKLKK 155
             L+ N  + P  +K+N +  +K KK
Sbjct:    10 LNVNFPNCPQAHKINIDIYIKKKK 33


WARNING:  HSPs involving 48 database sequences were not reported due to the
          limiting value of parameter B = 50.


Parameters:
  filter=none
  matrix=BLOSUM62
  V=50
  B=50
  E=10
  gi
  H=1
  sort_by_pvalue
  echofilter

  ctxfactor=5.79

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   Std.    0   BLOSUM62                                 0.318   0.135   0.401  
   +3      0   BLOSUM62        0.318   0.135   0.401    0.321   0.134   0.384  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +2      0   BLOSUM62        0.304   0.119   0.296    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +1      0   BLOSUM62        0.318   0.135   0.401    0.363   0.165   0.550  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -1      0   BLOSUM62        0.318   0.135   0.401    0.354   0.163   0.543  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -2      0   BLOSUM62        0.318   0.135   0.401    0.389   0.184   0.760  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -3      0   BLOSUM62        0.318   0.135   0.401    0.397   0.194   0.765  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E    S W   T  X   E2     S2
   +3      0       87        67       10.  57 3  12 22  0.12    30
                                                    27  0.10    31
   +2      0       87        66       10.  57 3  11 23  0.12    30
                                                    27  0.096   31
   +1      0       88        67       10.  57 3  12 22  0.12    30
                                                    27  0.10    31
   -1      0       88        66       10.  57 3  12 22  0.11    30
                                                    27  0.096   31
   -2      0       87        67       10.  57 3  12 22  0.12    30
                                                    27  0.10    31
   -3      0       87        68       10.  57 3  12 22  0.12    30
                                                    27  0.10    31


Statistics:

  Database:  /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
    Title:  nr
    Release date:  unknown
    Posted date:  8:50 PM CDT May 27, 2000
    Format:  BLAST
  # of letters in database:  158,518,215
  # of sequences in database:  505,245
  # of database sequences satisfying E:  98
  No. of states in DFA:  570 (56 KB)
  Total size of DFA:  101 KB (128 KB)
  Time to generate neighborhood:  0.00u 0.01s 0.01t  Elapsed: 00:00:00
  No. of threads or processors used:  4
  Search cpu time:  122.33u 1.12s 123.45t  Elapsed: 00:00:37
  Total cpu time:  122.43u 1.17s 123.60t  Elapsed: 00:00:38
  Start:  Wed Feb 14 22:33:23 2001   End:  Wed Feb 14 22:34:01 2001

WARNINGS ISSUED:  2



Annotated Domains Database:   March 14, 2000 

Release Date:  March 14, 2000