BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SMu0657
(292 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|24379188|ref|NP_721143.1| conserved hypothetical protein... 482 e-134
gi|81096877|ref|ZP_00875203.1| conserved hypothetical prote... 333 6e-90
gi|77408814|ref|ZP_00785543.1| membrane protein, putative [... 315 2e-84
gi|76786973|ref|YP_330339.1| hypothetical protein SAK_1739 ... 313 5e-84
gi|25011815|ref|NP_736210.1| hypothetical protein gbs1776 [... 311 3e-83
gi|22537870|ref|NP_688721.1| hypothetical protein SAG1731 [... 310 5e-83
gi|28895180|ref|NP_801530.1| hypothetical protein SPs0268 [... 297 6e-79
gi|21911135|ref|NP_665403.1| hypothetical protein SpyM3_159... 296 7e-79
gi|50914930|ref|YP_060902.1| Hypothetical membrane spanning... 296 1e-78
gi|71904222|ref|YP_281025.1| hypothetical membrane spanning... 296 1e-78
gi|94989207|ref|YP_597308.1| hypothetical membrane spanning... 295 2e-78
gi|15675675|ref|NP_269849.1| hypothetical protein SPy_1852 ... 293 6e-78
gi|116618999|ref|YP_819370.1| hypothetical protein LEUM_192... 246 1e-63
gi|77405980|ref|ZP_00783059.1| membrane protein, putative [... 241 3e-62
gi|28377723|ref|NP_784615.1| integral membrane protein [Lac... 151 4e-35
gi|126700856|ref|YP_001089753.1| hypothetical protein CD323... 146 1e-33
gi|106895320|ref|ZP_01362419.1| conserved hypothetical memb... 146 2e-33
gi|153939703|ref|YP_001391764.1| hypothetical protein CLI_2... 140 8e-32
gi|148380424|ref|YP_001254965.1| membrane protein [Clostrid... 140 1e-31
gi|90580096|ref|ZP_01235904.1| hypothetical integral membra... 139 2e-31
gi|153941311|ref|YP_001391770.1| hypothetical protein CLI_2... 137 8e-31
gi|150388507|ref|YP_001318556.1| hypothetical protein Amet_... 136 1e-30
gi|153932925|ref|YP_001384647.1| hypothetical protein CLB_2... 136 2e-30
gi|90411643|ref|ZP_01219653.1| hypothetical integral membra... 136 2e-30
gi|89075761|ref|ZP_01162149.1| hypothetical integral membra... 135 3e-30
gi|59711878|ref|YP_204654.1| hypothetical membrane spanning... 135 3e-30
gi|148380429|ref|YP_001254970.1| integral membrane protein ... 135 3e-30
gi|54308288|ref|YP_129308.1| hypothetical integral membrane... 134 7e-30
gi|148381128|ref|YP_001255669.1| membrane protein [Clostrid... 129 2e-28
gi|153938827|ref|YP_001392531.1| hypothetical protein CLI_3... 129 2e-28
gi|148380418|ref|YP_001254959.1| membrane protein [Clostrid... 127 8e-28
gi|153939456|ref|YP_001391760.1| hypothetical protein CLI_2... 127 8e-28
gi|145297856|ref|YP_001140697.1| conserved integral membran... 120 8e-26
gi|88711266|ref|ZP_01105354.1| hypothetical membrane spanni... 115 5e-24
gi|42526125|ref|NP_971223.1| hypothetical protein TDE0609 [... 114 7e-24
gi|117618811|ref|YP_857992.1| hypothetical protein AHA_3522... 113 1e-23
gi|110004207|emb|CAK98545.1| conserved hypothetical transme... 111 5e-23
gi|153854964|ref|ZP_01996177.1| hypothetical protein DORLON... 111 5e-23
gi|29375221|ref|NP_814374.1| hypothetical protein EF0617 [E... 107 6e-22
gi|116493899|ref|YP_805633.1| hypothetical protein LSEI_033... 107 9e-22
gi|90962248|ref|YP_536164.1| Hypothetical membrane spanning... 105 5e-21
gi|148358160|ref|YP_001249367.1| integral membrane protein ... 62 4e-08
gi|54292985|ref|YP_125400.1| hypothetical protein lpl0021 [... 62 4e-08
gi|54296003|ref|YP_122372.1| hypothetical protein lpp0020 [... 62 4e-08
gi|52840276|ref|YP_094075.1| integral membrane protein [Leg... 62 4e-08
>gi|24379188|ref|NP_721143.1| conserved hypothetical protein; possible Na+/solute symporter
[Streptococcus mutans UA159]
gi|24377098|gb|AAN58449.1|AE014915_2 conserved hypothetical protein; possible Na+/solute symporter
[Streptococcus mutans UA159]
Length = 292
Score = 482 bits (1240), Expect = e-134, Method: Composition-based stats.
Identities = 292/292 (100%), Positives = 292/292 (100%)
Query: 1 MTNRLILNTIQLLLISLITWIMGTILLHTRQHQINLKEKFLTGFWIGYVTDLLDTLGIGT 60
MTNRLILNTIQLLLISLITWIMGTILLHTRQHQINLKEKFLTGFWIGYVTDLLDTLGIGT
Sbjct: 1 MTNRLILNTIQLLLISLITWIMGTILLHTRQHQINLKEKFLTGFWIGYVTDLLDTLGIGT 60
Query: 61 FATTTTLFKATKLVEDDRKIPATMSTAHVVPVLVEALCFVTIVKVDITTLVCMAAASFTG 120
FATTTTLFKATKLVEDDRKIPATMSTAHVVPVLVEALCFVTIVKVDITTLVCMAAASFTG
Sbjct: 61 FATTTTLFKATKLVEDDRKIPATMSTAHVVPVLVEALCFVTIVKVDITTLVCMAAASFTG 120
Query: 121 AFVGTRITKNWNTQQVQRVLGILLIIAALVMVYRMLTNPGAGISSQIRGLKGIWLLVGII 180
AFVGTRITKNWNTQQVQRVLGILLIIAALVMVYRMLTNPGAGISSQIRGLKGIWLLVGII
Sbjct: 121 AFVGTRITKNWNTQQVQRVLGILLIIAALVMVYRMLTNPGAGISSQIRGLKGIWLLVGII 180
Query: 181 FDFIIGMLMTMGLGNYAPELIFFSLMGINPSIALPVMMLDAAMILTASSIAFIKSDRVHW 240
FDFIIGMLMTMGLGNYAPELIFFSLMGINPSIALPVMMLDAAMILTASSIAFIKSDRVHW
Sbjct: 181 FDFIIGMLMTMGLGNYAPELIFFSLMGINPSIALPVMMLDAAMILTASSIAFIKSDRVHW 240
Query: 241 PGTFGIIIGGVLGVLTAAFFLSNLDINHLKILVVFIAFFTGATLLRSSIIRR 292
PGTFGIIIGGVLGVLTAAFFLSNLDINHLKILVVFIAFFTGATLLRSSIIRR
Sbjct: 241 PGTFGIIIGGVLGVLTAAFFLSNLDINHLKILVVFIAFFTGATLLRSSIIRR 292
>gi|81096877|ref|ZP_00875203.1| conserved hypothetical protein; possible Na+/solute symporter
[Streptococcus suis 89/1591]
gi|146318188|ref|YP_001197900.1| Predicted permease [Streptococcus suis 05ZYH33]
gi|146320375|ref|YP_001200086.1| Predicted permease [Streptococcus suis 98HAH33]
gi|80977064|gb|EAP40621.1| conserved hypothetical protein; possible Na+/solute symporter
[Streptococcus suis 89/1591]
gi|145688994|gb|ABP89500.1| Predicted permease [Streptococcus suis 05ZYH33]
gi|145691181|gb|ABP91686.1| Predicted permease [Streptococcus suis 98HAH33]
Length = 295
Score = 333 bits (855), Expect = 6e-90, Method: Composition-based stats.
Identities = 207/292 (70%), Positives = 258/292 (88%)
Query: 1 MTNRLILNTIQLLLISLITWIMGTILLHTRQHQINLKEKFLTGFWIGYVTDLLDTLGIGT 60
M N++IL TIQ+ +++LI W++ TIL + ++H I+LKEKF TGF IGYVTDLLDTLGIGT
Sbjct: 1 MNNQIILLTIQVFIVALILWMLYTILSYAKKHDISLKEKFWTGFGIGYVTDLLDTLGIGT 60
Query: 61 FATTTTLFKATKLVEDDRKIPATMSTAHVVPVLVEALCFVTIVKVDITTLVCMAAASFTG 120
FATTTT+FK TKLVEDDRKIPATM+TAH++PVLVEAL F+TIV+VD+ TL+ MAAA+FTG
Sbjct: 61 FATTTTMFKLTKLVEDDRKIPATMTTAHIIPVLVEALLFITIVEVDMVTLIAMAAAAFTG 120
Query: 121 AFVGTRITKNWNTQQVQRVLGILLIIAALVMVYRMLTNPGAGISSQIRGLKGIWLLVGII 180
AFVG ++T+ W+T++VQR+LGILLIIAA MVYRM+TNPGA ++++++GL G L VGI
Sbjct: 121 AFVGAKVTQKWDTKKVQRILGILLIIAACFMVYRMITNPGADLTNEVKGLTGWKLAVGIA 180
Query: 181 FDFIIGMLMTMGLGNYAPELIFFSLMGINPSIALPVMMLDAAMILTASSIAFIKSDRVHW 240
FDF++GMLM+MGLGNYAPELIFFSLMGI+P++ALPVMML+AAMI+TA + FI+S RV+W
Sbjct: 181 FDFMVGMLMSMGLGNYAPELIFFSLMGISPAVALPVMMLNAAMIMTAGAKQFIQSGRVNW 240
Query: 241 PGTFGIIIGGVLGVLTAAFFLSNLDINHLKILVVFIAFFTGATLLRSSIIRR 292
PG GI++GGVLGVLTAAFFLSNLDIN+LKILVVFIA +TG TLLRSS + R
Sbjct: 241 PGVPGIVVGGVLGVLTAAFFLSNLDINNLKILVVFIAAYTGFTLLRSSFVTR 292
>gi|77408814|ref|ZP_00785543.1| membrane protein, putative [Streptococcus agalactiae COH1]
gi|77412141|ref|ZP_00788464.1| membrane protein, putative [Streptococcus agalactiae CJB111]
gi|77413681|ref|ZP_00789865.1| putative membrane protein [Streptococcus agalactiae 515]
gi|77160281|gb|EAO71408.1| putative membrane protein [Streptococcus agalactiae 515]
gi|77161801|gb|EAO72789.1| membrane protein, putative [Streptococcus agalactiae CJB111]
gi|77172595|gb|EAO75735.1| membrane protein, putative [Streptococcus agalactiae COH1]
Length = 319
Score = 315 bits (806), Expect = 2e-84, Method: Composition-based stats.
Identities = 185/288 (64%), Positives = 231/288 (80%)
Query: 1 MTNRLILNTIQLLLISLITWIMGTILLHTRQHQINLKEKFLTGFWIGYVTDLLDTLGIGT 60
M L+L+ IQL+LI + I+ H R +IN ++F TG WIG+VTD LDTLGIG+
Sbjct: 22 MNETLLLHGIQLILIIAMIITFYQIVRHIRSQKINPFKRFFTGLWIGFVTDALDTLGIGS 81
Query: 61 FATTTTLFKATKLVEDDRKIPATMSTAHVVPVLVEALCFVTIVKVDITTLVCMAAASFTG 120
FATTTT FK TKLVEDDRKIPATM+ AHV+PVL+++LCF+ +VKV+ TL+ MA A+F G
Sbjct: 82 FATTTTFFKLTKLVEDDRKIPATMTAAHVLPVLLQSLCFIFVVKVEALTLITMAGAAFIG 141
Query: 121 AFVGTRITKNWNTQQVQRVLGILLIIAALVMVYRMLTNPGAGISSQIRGLKGIWLLVGII 180
AFVG ++TKNW+ VQR+LG LLI AA++M+YRM+TNPGAGIS + GL GIWL VGI+
Sbjct: 142 AFVGAKMTKNWHAPTVQRILGTLLITAAIIMLYRMITNPGAGISDSVHGLHGIWLFVGIV 201
Query: 181 FDFIIGMLMTMGLGNYAPELIFFSLMGINPSIALPVMMLDAAMILTASSIAFIKSDRVHW 240
F+FIIG+LMTMGLGNYAPELIFFSLMG++P++A+PVMMLDAAMI+TASS FIKS RV+W
Sbjct: 202 FNFIIGVLMTMGLGNYAPELIFFSLMGLSPAVAMPVMMLDAAMIMTASSTQFIKSGRVNW 261
Query: 241 PGTFGIIIGGVLGVLTAAFFLSNLDINHLKILVVFIAFFTGATLLRSS 288
G G++ GG+LGV+ A FL+NLD+N LK LVV I FTGA L+RSS
Sbjct: 262 NGFAGLVTGGILGVIVAVLFLTNLDLNSLKTLVVGIVLFTGAMLIRSS 309
>gi|76786973|ref|YP_330339.1| hypothetical protein SAK_1739 [Streptococcus agalactiae A909]
gi|76799712|ref|ZP_00781810.1| membrane protein, putative [Streptococcus agalactiae 18RS21]
gi|76562030|gb|ABA44614.1| membrane protein, putative [Streptococcus agalactiae A909]
gi|76584936|gb|EAO61596.1| membrane protein, putative [Streptococcus agalactiae 18RS21]
Length = 319
Score = 313 bits (803), Expect = 5e-84, Method: Composition-based stats.
Identities = 185/288 (64%), Positives = 230/288 (79%)
Query: 1 MTNRLILNTIQLLLISLITWIMGTILLHTRQHQINLKEKFLTGFWIGYVTDLLDTLGIGT 60
M L+L+ IQL+LI + I+ H R +IN ++F TG WIG+VTD LDTLGIG+
Sbjct: 22 MNETLLLHGIQLILIIAMIITFYQIVRHIRSQKINPFKRFFTGLWIGFVTDALDTLGIGS 81
Query: 61 FATTTTLFKATKLVEDDRKIPATMSTAHVVPVLVEALCFVTIVKVDITTLVCMAAASFTG 120
FATTTT FK TKLVEDDRKIPATM+ AHV+PVL+++LCF+ +VKV+ TL+ MA A+F G
Sbjct: 82 FATTTTFFKLTKLVEDDRKIPATMTAAHVLPVLLQSLCFIFVVKVEALTLITMAGAAFIG 141
Query: 121 AFVGTRITKNWNTQQVQRVLGILLIIAALVMVYRMLTNPGAGISSQIRGLKGIWLLVGII 180
AFVG ++TKNW+ VQR+LG LLI AA++M+YRM+TNPGAGIS + GL GIWL VGI
Sbjct: 142 AFVGAKMTKNWHAPTVQRILGTLLITAAIIMLYRMITNPGAGISDSVHGLHGIWLFVGIG 201
Query: 181 FDFIIGMLMTMGLGNYAPELIFFSLMGINPSIALPVMMLDAAMILTASSIAFIKSDRVHW 240
F+FIIG+LMTMGLGNYAPELIFFSLMG++P++A+PVMMLDAAMI+TASS FIKS RV+W
Sbjct: 202 FNFIIGVLMTMGLGNYAPELIFFSLMGLSPAVAMPVMMLDAAMIMTASSTQFIKSGRVNW 261
Query: 241 PGTFGIIIGGVLGVLTAAFFLSNLDINHLKILVVFIAFFTGATLLRSS 288
G G++ GG+LGV+ A FL+NLD+N LK LVV I FTGA L+RSS
Sbjct: 262 NGFAGLVTGGILGVIVAVLFLTNLDLNSLKTLVVGIVLFTGAMLIRSS 309
>gi|25011815|ref|NP_736210.1| hypothetical protein gbs1776 [Streptococcus agalactiae NEM316]
gi|24413356|emb|CAD47435.1| Unknown [Streptococcus agalactiae NEM316]
Length = 298
Score = 311 bits (798), Expect = 3e-83, Method: Composition-based stats.
Identities = 185/288 (64%), Positives = 231/288 (80%)
Query: 1 MTNRLILNTIQLLLISLITWIMGTILLHTRQHQINLKEKFLTGFWIGYVTDLLDTLGIGT 60
M L+L+ IQL+LI + I+ H R +IN ++F TG WIG+VTD LDTLGIG+
Sbjct: 1 MNETLLLHGIQLILIIAMIITFYQIVRHIRSQKINPFKRFFTGLWIGFVTDALDTLGIGS 60
Query: 61 FATTTTLFKATKLVEDDRKIPATMSTAHVVPVLVEALCFVTIVKVDITTLVCMAAASFTG 120
FATTTT FK TKLVEDDRKIPATM+ AHV+PVL+++LCF+ +VKV+ TL+ MA A+F G
Sbjct: 61 FATTTTFFKLTKLVEDDRKIPATMTAAHVLPVLLQSLCFIFVVKVEALTLITMAGAAFIG 120
Query: 121 AFVGTRITKNWNTQQVQRVLGILLIIAALVMVYRMLTNPGAGISSQIRGLKGIWLLVGII 180
AFVG ++TKNW+ VQR+LG LLI AA++M+YRM+TNPGAGIS + GL GIWL VGI+
Sbjct: 121 AFVGAKMTKNWHAPTVQRILGTLLITAAIIMLYRMITNPGAGISDSVHGLHGIWLFVGIV 180
Query: 181 FDFIIGMLMTMGLGNYAPELIFFSLMGINPSIALPVMMLDAAMILTASSIAFIKSDRVHW 240
F+FIIG+LMTMGLGNYAPELIFFSLMG++P++A+PVMMLDAAMI+TASS FIKS RV+W
Sbjct: 181 FNFIIGVLMTMGLGNYAPELIFFSLMGLSPAVAMPVMMLDAAMIMTASSTQFIKSGRVNW 240
Query: 241 PGTFGIIIGGVLGVLTAAFFLSNLDINHLKILVVFIAFFTGATLLRSS 288
G G++ GG+LGV+ A FL+NLD+N LK LVV I FTGA L+RSS
Sbjct: 241 NGFAGLVTGGILGVIVAVLFLTNLDLNSLKTLVVGIVLFTGAMLIRSS 288
>gi|22537870|ref|NP_688721.1| hypothetical protein SAG1731 [Streptococcus agalactiae 2603V/R]
gi|22534766|gb|AAN00594.1|AE014270_12 membrane protein, putative [Streptococcus agalactiae 2603V/R]
Length = 298
Score = 310 bits (795), Expect = 5e-83, Method: Composition-based stats.
Identities = 185/288 (64%), Positives = 230/288 (79%)
Query: 1 MTNRLILNTIQLLLISLITWIMGTILLHTRQHQINLKEKFLTGFWIGYVTDLLDTLGIGT 60
M L+L+ IQL+LI + I+ H R +IN ++F TG WIG+VTD LDTLGIG+
Sbjct: 1 MNETLLLHGIQLILIIAMIITFYQIVRHIRSQKINPFKRFFTGLWIGFVTDALDTLGIGS 60
Query: 61 FATTTTLFKATKLVEDDRKIPATMSTAHVVPVLVEALCFVTIVKVDITTLVCMAAASFTG 120
FATTTT FK TKLVEDDRKIPATM+ AHV+PVL+++LCF+ +VKV+ TL+ MA A+F G
Sbjct: 61 FATTTTFFKLTKLVEDDRKIPATMTAAHVLPVLLQSLCFIFVVKVEALTLITMAGAAFIG 120
Query: 121 AFVGTRITKNWNTQQVQRVLGILLIIAALVMVYRMLTNPGAGISSQIRGLKGIWLLVGII 180
AFVG ++TKNW+ VQR+LG LLI AA++M+YRM+TNPGAGIS + GL GIWL VGI
Sbjct: 121 AFVGAKMTKNWHAPTVQRILGTLLITAAIIMLYRMITNPGAGISDSVHGLHGIWLFVGIG 180
Query: 181 FDFIIGMLMTMGLGNYAPELIFFSLMGINPSIALPVMMLDAAMILTASSIAFIKSDRVHW 240
F+FIIG+LMTMGLGNYAPELIFFSLMG++P++A+PVMMLDAAMI+TASS FIKS RV+W
Sbjct: 181 FNFIIGVLMTMGLGNYAPELIFFSLMGLSPAVAMPVMMLDAAMIMTASSTQFIKSGRVNW 240
Query: 241 PGTFGIIIGGVLGVLTAAFFLSNLDINHLKILVVFIAFFTGATLLRSS 288
G G++ GG+LGV+ A FL+NLD+N LK LVV I FTGA L+RSS
Sbjct: 241 NGFAGLVTGGILGVIVAVLFLTNLDLNSLKTLVVGIVLFTGAMLIRSS 288
>gi|28895180|ref|NP_801530.1| hypothetical protein SPs0268 [Streptococcus pyogenes SSI-1]
gi|28810425|dbj|BAC63363.1| hypothetical protein [Streptococcus pyogenes SSI-1]
Length = 298
Score = 297 bits (760), Expect = 6e-79, Method: Composition-based stats.
Identities = 177/288 (61%), Positives = 231/288 (80%)
Query: 1 MTNRLILNTIQLLLISLITWIMGTILLHTRQHQINLKEKFLTGFWIGYVTDLLDTLGIGT 60
M LIL IQ LL+S + +I ++ H ++++IN ++F TGFWIG +TD LDTLGIG+
Sbjct: 1 MNEMLILRLIQALLVSAMLFIFFMLVKHLKKNKINPFKRFWTGFWIGLLTDALDTLGIGS 60
Query: 61 FATTTTLFKATKLVEDDRKIPATMSTAHVVPVLVEALCFVTIVKVDITTLVCMAAASFTG 120
FATTTT FK TKLV DDR++P TM+ AHV+PVL+++LCF+ +VKV++ TL+ MAAA+F G
Sbjct: 61 FATTTTCFKLTKLVTDDRQLPGTMTVAHVLPVLIQSLCFIFVVKVEVLTLLAMAAAAFIG 120
Query: 121 AFVGTRITKNWNTQQVQRVLGILLIIAALVMVYRMLTNPGAGISSQIRGLKGIWLLVGII 180
A+ GT ITKNW+ VQR+LG LLIIAA++M+ R++ +PG +S I GL GIWL VGI
Sbjct: 121 AYFGTHITKNWHAPTVQRILGSLLIIAAIIMIIRIIYHPGEHLSDNIHGLHGIWLFVGIG 180
Query: 181 FDFIIGMLMTMGLGNYAPELIFFSLMGINPSIALPVMMLDAAMILTASSIAFIKSDRVHW 240
F+FI+G+LMTMGLGNYAPELIFFSLMG++P++A+PVMMLDAAMI+TASS FIK++RV W
Sbjct: 181 FNFIVGVLMTMGLGNYAPELIFFSLMGLSPTVAMPVMMLDAAMIMTASSSQFIKANRVSW 240
Query: 241 PGTFGIIIGGVLGVLTAAFFLSNLDINHLKILVVFIAFFTGATLLRSS 288
G GI+ GG++GVL A FFL+NLDIN LK+LV+ I FFTG L+RSS
Sbjct: 241 DGFAGIVSGGIIGVLLAVFFLTNLDINSLKLLVIAIVFFTGGMLIRSS 288
>gi|21911135|ref|NP_665403.1| hypothetical protein SpyM3_1599 [Streptococcus pyogenes MGAS315]
gi|21905346|gb|AAM80206.1| hypothetical protein SpyM3_1599 [Streptococcus pyogenes MGAS315]
Length = 310
Score = 296 bits (759), Expect = 7e-79, Method: Composition-based stats.
Identities = 177/288 (61%), Positives = 231/288 (80%)
Query: 1 MTNRLILNTIQLLLISLITWIMGTILLHTRQHQINLKEKFLTGFWIGYVTDLLDTLGIGT 60
M LIL IQ LL+S + +I ++ H ++++IN ++F TGFWIG +TD LDTLGIG+
Sbjct: 13 MNEMLILRLIQALLVSAMLFIFFMLVKHLKKNKINPFKRFWTGFWIGLLTDALDTLGIGS 72
Query: 61 FATTTTLFKATKLVEDDRKIPATMSTAHVVPVLVEALCFVTIVKVDITTLVCMAAASFTG 120
FATTTT FK TKLV DDR++P TM+ AHV+PVL+++LCF+ +VKV++ TL+ MAAA+F G
Sbjct: 73 FATTTTCFKLTKLVTDDRQLPGTMTVAHVLPVLIQSLCFIFVVKVEVLTLLAMAAAAFIG 132
Query: 121 AFVGTRITKNWNTQQVQRVLGILLIIAALVMVYRMLTNPGAGISSQIRGLKGIWLLVGII 180
A+ GT ITKNW+ VQR+LG LLIIAA++M+ R++ +PG +S I GL GIWL VGI
Sbjct: 133 AYFGTHITKNWHAPTVQRILGSLLIIAAIIMIIRIIYHPGEHLSDNIHGLHGIWLFVGIG 192
Query: 181 FDFIIGMLMTMGLGNYAPELIFFSLMGINPSIALPVMMLDAAMILTASSIAFIKSDRVHW 240
F+FI+G+LMTMGLGNYAPELIFFSLMG++P++A+PVMMLDAAMI+TASS FIK++RV W
Sbjct: 193 FNFIVGVLMTMGLGNYAPELIFFSLMGLSPTVAMPVMMLDAAMIMTASSSQFIKANRVSW 252
Query: 241 PGTFGIIIGGVLGVLTAAFFLSNLDINHLKILVVFIAFFTGATLLRSS 288
G GI+ GG++GVL A FFL+NLDIN LK+LV+ I FFTG L+RSS
Sbjct: 253 DGFAGIVSGGIIGVLLAVFFLTNLDINSLKLLVIAIVFFTGGMLIRSS 300
>gi|50914930|ref|YP_060902.1| Hypothetical membrane spanning protein [Streptococcus pyogenes
MGAS10394]
gi|71911385|ref|YP_282935.1| hypothetical membrane spanning protein [Streptococcus pyogenes
MGAS5005]
gi|139473154|ref|YP_001127869.1| hypothetical protein SpyM50278 [Streptococcus pyogenes str.
Manfredo]
gi|50904004|gb|AAT87719.1| Hypothetical membrane spanning protein [Streptococcus pyogenes
MGAS10394]
gi|71854167|gb|AAZ52190.1| hypothetical membrane spanning protein [Streptococcus pyogenes
MGAS5005]
gi|134271400|emb|CAM29620.1| putative membrane protein [Streptococcus pyogenes str. Manfredo]
Length = 298
Score = 296 bits (757), Expect = 1e-78, Method: Composition-based stats.
Identities = 177/288 (61%), Positives = 231/288 (80%)
Query: 1 MTNRLILNTIQLLLISLITWIMGTILLHTRQHQINLKEKFLTGFWIGYVTDLLDTLGIGT 60
M LIL IQ LL+S + +I ++ H ++++IN ++F TGFWIG +TD LDTLGIG+
Sbjct: 1 MNEMLILRLIQALLVSAMLFIFFMLVKHLKKNKINPFKRFWTGFWIGLLTDALDTLGIGS 60
Query: 61 FATTTTLFKATKLVEDDRKIPATMSTAHVVPVLVEALCFVTIVKVDITTLVCMAAASFTG 120
FATTTT FK TKLV DDR++P TM+ AHV+PVL+++LCF+ +VKV++ TL+ MAAA+F G
Sbjct: 61 FATTTTCFKLTKLVTDDRQLPGTMTVAHVLPVLIQSLCFIFVVKVEVLTLLAMAAAAFIG 120
Query: 121 AFVGTRITKNWNTQQVQRVLGILLIIAALVMVYRMLTNPGAGISSQIRGLKGIWLLVGII 180
A+ GT ITKNW+ VQR+LG LLIIAA++M+ R++ +PG +S I GL GIWL VGI
Sbjct: 121 AYFGTHITKNWHAPTVQRILGSLLIIAAIIMIIRIIYHPGEHLSDTIHGLHGIWLFVGIG 180
Query: 181 FDFIIGMLMTMGLGNYAPELIFFSLMGINPSIALPVMMLDAAMILTASSIAFIKSDRVHW 240
F+FI+G+LMTMGLGNYAPELIFFSLMG++P++A+PVMMLDAAMI+TASS FIK++RV W
Sbjct: 181 FNFIVGVLMTMGLGNYAPELIFFSLMGLSPTVAMPVMMLDAAMIMTASSSQFIKANRVSW 240
Query: 241 PGTFGIIIGGVLGVLTAAFFLSNLDINHLKILVVFIAFFTGATLLRSS 288
G GI+ GG++GVL A FFL+NLDIN LK+LV+ I FFTG L+RSS
Sbjct: 241 DGFAGIVSGGIIGVLLAVFFLTNLDINSLKLLVIAIVFFTGGMLIRSS 288
>gi|71904222|ref|YP_281025.1| hypothetical membrane spanning protein [Streptococcus pyogenes
MGAS6180]
gi|94995027|ref|YP_603125.1| hypothetical membrane spanning protein [Streptococcus pyogenes
MGAS10750]
gi|71803317|gb|AAX72670.1| hypothetical membrane spanning protein [Streptococcus pyogenes
MGAS6180]
gi|94548535|gb|ABF38581.1| hypothetical membrane spanning protein [Streptococcus pyogenes
MGAS10750]
Length = 310
Score = 296 bits (757), Expect = 1e-78, Method: Composition-based stats.
Identities = 177/288 (61%), Positives = 232/288 (80%)
Query: 1 MTNRLILNTIQLLLISLITWIMGTILLHTRQHQINLKEKFLTGFWIGYVTDLLDTLGIGT 60
M LIL IQ LL+S + +I ++ H ++++IN ++F TGFWIG +TD LDTLGIG+
Sbjct: 13 MNEMLILRLIQALLVSAMLFIFFMLVKHLKKNKINPFKRFWTGFWIGLLTDALDTLGIGS 72
Query: 61 FATTTTLFKATKLVEDDRKIPATMSTAHVVPVLVEALCFVTIVKVDITTLVCMAAASFTG 120
FATTTT FK TKLV DDR++P TM+ AHV+PVL+++LCF+ +VKV++ TL+ MAAA+F G
Sbjct: 73 FATTTTCFKLTKLVTDDRQLPGTMTVAHVLPVLIQSLCFIFVVKVEVLTLLAMAAAAFIG 132
Query: 121 AFVGTRITKNWNTQQVQRVLGILLIIAALVMVYRMLTNPGAGISSQIRGLKGIWLLVGII 180
A++GT ITKNW+ VQR+LG LLIIAA++M+ R++ +PG +S I GL GIWL VGI
Sbjct: 133 AYLGTHITKNWHAPTVQRILGSLLIIAAIIMIIRIIYHPGEHLSDTIHGLHGIWLFVGIG 192
Query: 181 FDFIIGMLMTMGLGNYAPELIFFSLMGINPSIALPVMMLDAAMILTASSIAFIKSDRVHW 240
F+FI+G+LMTMGLGNYAPELIFFSLMG++P++A+PVMMLDAAMI+TASS FIK++RV W
Sbjct: 193 FNFIVGVLMTMGLGNYAPELIFFSLMGLSPTVAMPVMMLDAAMIMTASSSQFIKANRVSW 252
Query: 241 PGTFGIIIGGVLGVLTAAFFLSNLDINHLKILVVFIAFFTGATLLRSS 288
G GI+ GG++GVL A FFL+NLDIN LK+LV+ I FFTG L+RSS
Sbjct: 253 DGFAGIVSGGIIGVLLAVFFLTNLDINSLKLLVIAIVFFTGGMLIRSS 300
>gi|94989207|ref|YP_597308.1| hypothetical membrane spanning protein [Streptococcus pyogenes
MGAS9429]
gi|94991148|ref|YP_599248.1| hypothetical membrane spanning protein [Streptococcus pyogenes
MGAS10270]
gi|94993094|ref|YP_601193.1| hypothetical membrane spanning protein [Streptococcus pyogenes
MGAS2096]
gi|94542715|gb|ABF32764.1| hypothetical membrane spanning protein [Streptococcus pyogenes
MGAS9429]
gi|94544656|gb|ABF34704.1| hypothetical membrane spanning protein [Streptococcus pyogenes
MGAS10270]
gi|94546602|gb|ABF36649.1| hypothetical membrane spanning protein [Streptococcus pyogenes
MGAS2096]
Length = 310
Score = 295 bits (756), Expect = 2e-78, Method: Composition-based stats.
Identities = 177/288 (61%), Positives = 231/288 (80%)
Query: 1 MTNRLILNTIQLLLISLITWIMGTILLHTRQHQINLKEKFLTGFWIGYVTDLLDTLGIGT 60
M LIL IQ LL+S + +I ++ H ++++IN ++F TGFWIG +TD LDTLGIG+
Sbjct: 13 MNEMLILRLIQALLVSAMLFIFFMLVKHLKKNKINPFKRFWTGFWIGLLTDALDTLGIGS 72
Query: 61 FATTTTLFKATKLVEDDRKIPATMSTAHVVPVLVEALCFVTIVKVDITTLVCMAAASFTG 120
FATTTT FK TKLV DDR++P TM+ AHV+PVL+++LCF+ +VKV++ TL+ MAAA+F G
Sbjct: 73 FATTTTCFKLTKLVTDDRQLPGTMTVAHVLPVLIQSLCFIFVVKVEVLTLLAMAAAAFIG 132
Query: 121 AFVGTRITKNWNTQQVQRVLGILLIIAALVMVYRMLTNPGAGISSQIRGLKGIWLLVGII 180
A+ GT ITKNW+ VQR+LG LLIIAA++M+ R++ +PG +S I GL GIWL VGI
Sbjct: 133 AYFGTHITKNWHAPTVQRILGSLLIIAAIIMIIRIIYHPGEHLSDTIHGLHGIWLFVGIG 192
Query: 181 FDFIIGMLMTMGLGNYAPELIFFSLMGINPSIALPVMMLDAAMILTASSIAFIKSDRVHW 240
F+FI+G+LMTMGLGNYAPELIFFSLMG++P++A+PVMMLDAAMI+TASS FIK++RV W
Sbjct: 193 FNFIVGVLMTMGLGNYAPELIFFSLMGLSPTVAMPVMMLDAAMIMTASSSQFIKANRVSW 252
Query: 241 PGTFGIIIGGVLGVLTAAFFLSNLDINHLKILVVFIAFFTGATLLRSS 288
G GI+ GG++GVL A FFL+NLDIN LK+LV+ I FFTG L+RSS
Sbjct: 253 DGFAGIVSGGIIGVLLAVFFLTNLDINSLKLLVIAIVFFTGGMLIRSS 300
>gi|15675675|ref|NP_269849.1| hypothetical protein SPy_1852 [Streptococcus pyogenes M1 GAS]
gi|19746781|ref|NP_607917.1| hypothetical protein spyM18_1915 [Streptococcus pyogenes MGAS8232]
gi|13622889|gb|AAK34570.1| hypothetical protein SPy_1852 [Streptococcus pyogenes M1 GAS]
gi|19749014|gb|AAL98416.1| hypothetical protein [Streptococcus pyogenes MGAS8232]
Length = 295
Score = 293 bits (751), Expect = 6e-78, Method: Composition-based stats.
Identities = 176/284 (61%), Positives = 230/284 (80%)
Query: 5 LILNTIQLLLISLITWIMGTILLHTRQHQINLKEKFLTGFWIGYVTDLLDTLGIGTFATT 64
LIL IQ LL+S + +I ++ H ++++IN ++F TGFWIG +TD LDTLGIG+FATT
Sbjct: 2 LILRLIQALLVSAMLFIFFMLVKHLKKNKINPFKRFWTGFWIGLLTDALDTLGIGSFATT 61
Query: 65 TTLFKATKLVEDDRKIPATMSTAHVVPVLVEALCFVTIVKVDITTLVCMAAASFTGAFVG 124
TT FK TKLV DDR++P TM+ AHV+PVL+++LCF+ +VKV++ TL+ MAAA+F GA+ G
Sbjct: 62 TTCFKLTKLVTDDRQLPGTMTVAHVLPVLIQSLCFIFVVKVEVLTLLAMAAAAFIGAYFG 121
Query: 125 TRITKNWNTQQVQRVLGILLIIAALVMVYRMLTNPGAGISSQIRGLKGIWLLVGIIFDFI 184
T ITKNW+ VQR+LG LLIIAA++M+ R++ +PG +S I GL GIWL VGI F+FI
Sbjct: 122 THITKNWHAPTVQRILGSLLIIAAIIMIIRIIYHPGEHLSDTIHGLHGIWLFVGIGFNFI 181
Query: 185 IGMLMTMGLGNYAPELIFFSLMGINPSIALPVMMLDAAMILTASSIAFIKSDRVHWPGTF 244
+G+LMTMGLGNYAPELIFFSLMG++P++A+PVMMLDAAMI+TASS FIK++RV W G
Sbjct: 182 VGVLMTMGLGNYAPELIFFSLMGLSPTVAMPVMMLDAAMIMTASSSQFIKANRVSWDGFA 241
Query: 245 GIIIGGVLGVLTAAFFLSNLDINHLKILVVFIAFFTGATLLRSS 288
GI+ GG++GVL A FFL+NLDIN LK+LV+ I FFTG L+RSS
Sbjct: 242 GIVSGGIIGVLLAVFFLTNLDINSLKLLVIAIVFFTGGMLIRSS 285
>gi|116618999|ref|YP_819370.1| hypothetical protein LEUM_1926 [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
gi|116097846|gb|ABJ62997.1| hypothetical protein LEUM_1926 [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
Length = 294
Score = 246 bits (628), Expect = 1e-63, Method: Composition-based stats.
Identities = 138/285 (48%), Positives = 205/285 (71%)
Query: 5 LILNTIQLLLISLITWIMGTILLHTRQHQINLKEKFLTGFWIGYVTDLLDTLGIGTFATT 64
IL +IQ+LL+ ++ ++ ++ H+ + ++F G IG++TD DTLGIG+FATT
Sbjct: 6 FILYSIQILLVVVMIAMIIVVIRSYLLHRQPIFKRFGLGMLIGFITDFGDTLGIGSFATT 65
Query: 65 TTLFKATKLVEDDRKIPATMSTAHVVPVLVEALCFVTIVKVDITTLVCMAAASFTGAFVG 124
T F+ T ++DDRK+P T++ H +PV+ +AL F+T VKV++TTL+ M A+ GA+ G
Sbjct: 66 TAAFRMTHYIDDDRKLPGTLNAVHAIPVMFQALFFITAVKVELTTLLPMTTAAVIGAYAG 125
Query: 125 TRITKNWNTQQVQRVLGILLIIAALVMVYRMLTNPGAGISSQIRGLKGIWLLVGIIFDFI 184
T +TK W+ VQRV+ + L+IA ++MV RM+T PG+ S + GL G WL++GI+F+F
Sbjct: 126 THVTKKWHAPTVQRVMAVALLIAVIIMVVRMITTPGSNNSMGVHGLHGWWLILGIVFNFG 185
Query: 185 IGMLMTMGLGNYAPELIFFSLMGINPSIALPVMMLDAAMILTASSIAFIKSDRVHWPGTF 244
IG+LMTMGLGNYAPELIFFSLMG+NP++A PVMMLDAA+I+ +++ IK DRV W G
Sbjct: 186 IGVLMTMGLGNYAPELIFFSLMGVNPAVAFPVMMLDAALIMPTTALNVIKMDRVSWRGFA 245
Query: 245 GIIIGGVLGVLTAAFFLSNLDINHLKILVVFIAFFTGATLLRSSI 289
G+ IGGVLGV+ AA F ++++++ L L+V +A +T L+R S+
Sbjct: 246 GVAIGGVLGVIVAAKFFTSMNVDLLNKLIVIVALWTIFGLVRDSM 290
>gi|77405980|ref|ZP_00783059.1| membrane protein, putative [Streptococcus agalactiae H36B]
gi|77175432|gb|EAO78222.1| membrane protein, putative [Streptococcus agalactiae H36B]
Length = 215
Score = 241 bits (615), Expect = 3e-62, Method: Composition-based stats.
Identities = 135/205 (65%), Positives = 170/205 (82%)
Query: 84 MSTAHVVPVLVEALCFVTIVKVDITTLVCMAAASFTGAFVGTRITKNWNTQQVQRVLGIL 143
M+ AHV+PVL+++LCF+ +VKV+ TL+ MA A+F GAFVG ++TKNW+ VQR+LG L
Sbjct: 1 MTAAHVLPVLLQSLCFIFVVKVEALTLITMAGAAFIGAFVGAKMTKNWHAPTVQRILGTL 60
Query: 144 LIIAALVMVYRMLTNPGAGISSQIRGLKGIWLLVGIIFDFIIGMLMTMGLGNYAPELIFF 203
LI AA++M+YRM+TNPGAGIS + GL GIWL VGI F+FIIG+LMTMGLGNYAPELIFF
Sbjct: 61 LITAAIIMLYRMITNPGAGISDSVHGLHGIWLFVGIGFNFIIGVLMTMGLGNYAPELIFF 120
Query: 204 SLMGINPSIALPVMMLDAAMILTASSIAFIKSDRVHWPGTFGIIIGGVLGVLTAAFFLSN 263
SLMG++P++A+PVMMLDAAMI+TASS FIKS RV+W G G++ GG+LGV+ A FL+N
Sbjct: 121 SLMGLSPAVAMPVMMLDAAMIMTASSTQFIKSGRVNWNGFAGLVTGGILGVIVAVLFLTN 180
Query: 264 LDINHLKILVVFIAFFTGATLLRSS 288
LD+N LK LVV I FTGA L+RSS
Sbjct: 181 LDLNSLKTLVVGIVLFTGAMLIRSS 205
>gi|28377723|ref|NP_784615.1| integral membrane protein [Lactobacillus plantarum WCFS1]
gi|28270556|emb|CAD63460.1| integral membrane protein [Lactobacillus plantarum WCFS1]
Length = 293
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 107/290 (36%), Positives = 177/290 (61%), Gaps = 2/290 (0%)
Query: 5 LILNTIQLLLISLITWIMGTILLHTRQHQIN-LKEKFLTGFWIGYVTDLLDTLGIGTFAT 63
+++ I +LL+ L + G +L R+ F G IG VTD LDTLGIG+F
Sbjct: 1 MMVIAIVVLLMLLSIGLFGLLLAGARRQAAPFFDHSFGFGMVIGAVTDFLDTLGIGSFVV 60
Query: 64 TTTLFKATKLVEDDRKIPATMSTAHVVPVLVEALCFVTIVKVDITTLVCMAAASFTGAFV 123
+T +F+A+ ++D+RK+P T++T H +P EA FVT V V+ TL+ + A+ GA +
Sbjct: 61 STAIFQASHYLKDERKLPGTLNTMHAIPTAFEAFFFVTAVAVEPVTLISLVLAATLGALL 120
Query: 124 GTRITKNWNTQQVQRVLGILLIIAALVMVYRMLTNPG-AGISSQIRGLKGIWLLVGIIFD 182
G+ + N + +Q ++ L+I AL+M ++L G+++Q GL G LLVGI +
Sbjct: 121 GSEVMTKLNQRWIQLIMAGALVITALLMAAKLLGWISLLGVANQATGLSGWKLLVGIGGN 180
Query: 183 FIIGMLMTMGLGNYAPELIFFSLMGINPSIALPVMMLDAAMILTASSIAFIKSDRVHWPG 242
FI+G+LM+ G+G YAP ++ +G+ P A P+MML A+++ S++ FI+ DRV + G
Sbjct: 181 FILGLLMSAGVGLYAPCMVMVYFLGLTPIAAFPIMMLSCALLMPISAVNFIRHDRVDYRG 240
Query: 243 TFGIIIGGVLGVLTAAFFLSNLDINHLKILVVFIAFFTGATLLRSSIIRR 292
FGII+GG++GV+ AA + +L + L L+V ++ +T +L R++ R+
Sbjct: 241 LFGIILGGIIGVVVAATLVKSLSLTALSWLIVLVSCWTAFSLWRAAQRRK 290
>gi|126700856|ref|YP_001089753.1| hypothetical protein CD3236 [Clostridium difficile 630]
gi|145953748|ref|ZP_01802756.1| hypothetical protein CdifQ_04003757 [Clostridium difficile
QCD-32g58]
gi|115252293|emb|CAJ70134.1| putative membrane protein [Clostridium difficile 630]
Length = 293
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 89/245 (36%), Positives = 149/245 (60%), Gaps = 6/245 (2%)
Query: 47 GYVTDLLDTLGIGTFATTTTLFKATKLVEDDRKIPATMSTAHVVPVLVEALCFVTIVKVD 106
G++TD DTLGIG+FA T + KA KL D+K+P T++ AH +PV+ EA F +I+ VD
Sbjct: 45 GFITDFFDTLGIGSFAPTIAMSKALKLNIPDKKMPGTLNVAHTIPVVTEAFIFTSIIPVD 104
Query: 107 ITTLVCMAAASFTGAFVGTRITKNWNTQQVQRVLGILLIIAALVMVYR---MLTNPGAGI 163
TLV M A+ G+++G I + +++Q V+G+ L + A++M+ + PG G
Sbjct: 105 GVTLVSMVVAAAVGSYIGAGIIAKMDERKIQLVMGVTLALTAILMLLGHPWINVLPGGG- 163
Query: 164 SSQIRGLKGIWLLVGIIFDFIIGMLMTMGLGNYAPELIFFSLMGINPSIALPVMMLDAAM 223
GL G+ L++G+I +FI+G LMT G+G YAP + +G++ +A P++M A+
Sbjct: 164 --NELGLTGVKLVIGVIGNFILGALMTAGIGLYAPGMAMVYFLGMSAKVAFPIVMGSCAL 221
Query: 224 ILTASSIAFIKSDRVHWPGTFGIIIGGVLGVLTAAFFLSNLDINHLKILVVFIAFFTGAT 283
++ +S+ FIK D + I I G++GV AA+ + L ++ LK LV+ + +T AT
Sbjct: 222 LMPVASMKFIKEDAYTKKASVIIAICGLIGVFVAAYIVKTLPMDILKALVIVVIAYTSAT 281
Query: 284 LLRSS 288
++ ++
Sbjct: 282 MIMAA 286
>gi|106895320|ref|ZP_01362419.1| conserved hypothetical membrane spanning protein [Clostridium sp.
OhILAs]
gi|106773393|gb|EAT29978.1| conserved hypothetical membrane spanning protein [Clostridium sp.
OhILAs]
Length = 295
Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 90/248 (36%), Positives = 149/248 (60%), Gaps = 5/248 (2%)
Query: 46 IGYVTDLLDTLGIGTFATTTTLFKATKLVEDDRKIPATMSTAHVVPVLVEALCFVTIVKV 105
IG++T+ DTLGIG+FA TT L KA K +D + IP T++ A +PV+ EA F+T+++V
Sbjct: 42 IGFITNFFDTLGIGSFAPTTALLKAFKQTKD-KVIPGTLNVACTIPVVTEAFIFMTVIEV 100
Query: 106 DITTLVCMAAASFTGAFVGTRITKNWNTQQVQRVLGILLIIAALVM-VYRMLTNPGAGIS 164
+ TL+ M +A+ GA+VG I +++Q +GI L + A +M +M PG G
Sbjct: 101 EPVTLIGMLSAAAIGAWVGAGIVSKLPEKKIQITMGIALFVTAFLMFASKMGWMPGGG-- 158
Query: 165 SQIRGLKGIWLLVGIIFDFIIGMLMTMGLGNYAPELIFFSLMGINPSIALPVMMLDAAMI 224
+ GL+G L+ I +F++G LMT G+G YAP + +G++PS+A P+MM A +
Sbjct: 159 -EAIGLEGGKLVFAIAANFVLGALMTAGIGLYAPCMALVYFLGMSPSVAFPIMMGSCAFL 217
Query: 225 LTASSIAFIKSDRVHWPGTFGIIIGGVLGVLTAAFFLSNLDINHLKILVVFIAFFTGATL 284
+ +S+ F+K + GI +GG++GV AA+ + +L +N L +++ + +T T+
Sbjct: 218 MPVASVKFVKEGAYDRKASLGITLGGIVGVFIAAYIVKSLPLNVLGWVIILVILYTSTTM 277
Query: 285 LRSSIIRR 292
L S+ R
Sbjct: 278 LLSAFKPR 285
>gi|153939703|ref|YP_001391764.1| hypothetical protein CLI_2525 [Clostridium botulinum F str.
Langeland]
gi|152935599|gb|ABS41097.1| putative membrane protein [Clostridium botulinum F str. Langeland]
Length = 298
Score = 140 bits (353), Expect = 8e-32, Method: Composition-based stats.
Identities = 93/255 (36%), Positives = 150/255 (58%), Gaps = 6/255 (2%)
Query: 35 NLKEK--FLTGFWIGYVTDLLDTLGIGTFATTTTLFKATKLVEDDRKIPATMSTAHVVPV 92
NL+E F+ G IG V + DTLGIG+FA T++ K K ED + IP T++ VP+
Sbjct: 33 NLEENNFFIVGI-IGLVVNFFDTLGIGSFAPLTSMLKFFKQTED-KVIPGTLNVGCTVPM 90
Query: 93 LVEALCFVTIVKVDITTLVCMAAASFTGAFVGTRITKNWNTQQVQRVLGILLIIAALVMV 152
+++A F+T +KV+ TL+ M A+ G+ G I + ++VQ +G+ L++ AL+++
Sbjct: 91 ILQAFIFMTGIKVEPVTLISMILAAMIGSLFGAEIVSKLDEKKVQFCMGVSLLVVALIIL 150
Query: 153 YRMLTNPGAGISSQIRGLKGIWLLVGIIFDFIIGMLMTMGLGNYAPELIFFSLMGINPSI 212
L AG + GL G L++ II +FI+G+LMT+G+G YAP + ++G+NP +
Sbjct: 151 AGQLNLMPAGGNDI--GLHGAKLIIAIIGNFILGILMTVGIGLYAPCMALVCVLGMNPKV 208
Query: 213 ALPVMMLDAAMILTASSIAFIKSDRVHWPGTFGIIIGGVLGVLTAAFFLSNLDINHLKIL 272
A P+MM A +L SS F+K++ + I I GV+GVL AAF + L + L +
Sbjct: 209 AFPIMMGSCAFLLPMSSTKFVKNNAYDKKASISISIFGVVGVLIAAFIVKELPVRALTWM 268
Query: 273 VVFIAFFTGATLLRS 287
VV + +T T+ ++
Sbjct: 269 VVCVIMYTSITMFKA 283
>gi|148380424|ref|YP_001254965.1| membrane protein [Clostridium botulinum A str. ATCC 3502]
gi|153932697|ref|YP_001384641.1| hypothetical protein CLB_2333 [Clostridium botulinum A str. ATCC
19397]
gi|153937628|ref|YP_001388160.1| hypothetical protein CLC_2316 [Clostridium botulinum A str. Hall]
gi|148289908|emb|CAL84017.1| putative membrane protein [Clostridium botulinum A str. ATCC 3502]
gi|152928741|gb|ABS34241.1| putative membrane protein [Clostridium botulinum A str. ATCC 19397]
gi|152933542|gb|ABS39041.1| putative membrane protein [Clostridium botulinum A str. Hall]
Length = 298
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 93/255 (36%), Positives = 150/255 (58%), Gaps = 6/255 (2%)
Query: 35 NLKEK--FLTGFWIGYVTDLLDTLGIGTFATTTTLFKATKLVEDDRKIPATMSTAHVVPV 92
NL+E F+ G IG V + DTLGIG+FA T++ K K ED + IP T++ VP+
Sbjct: 33 NLEENNFFIVGI-IGLVVNFFDTLGIGSFAPLTSMLKFFKQTED-KVIPGTLNVGCTVPM 90
Query: 93 LVEALCFVTIVKVDITTLVCMAAASFTGAFVGTRITKNWNTQQVQRVLGILLIIAALVMV 152
+++A F+T +KV+ TL+ M A+ G+ G I + ++VQ +G+ L++ AL+++
Sbjct: 91 ILQAFIFMTGIKVESVTLISMILAAMIGSLFGAEIVSKLDEKKVQFCMGVSLLVVALIIL 150
Query: 153 YRMLTNPGAGISSQIRGLKGIWLLVGIIFDFIIGMLMTMGLGNYAPELIFFSLMGINPSI 212
L AG + GL G L++ II +FI+G+LMT+G+G YAP + ++G+NP +
Sbjct: 151 AGQLNLMPAGGNDI--GLHGAKLIIAIIGNFILGILMTVGIGLYAPCMALVCVLGMNPKV 208
Query: 213 ALPVMMLDAAMILTASSIAFIKSDRVHWPGTFGIIIGGVLGVLTAAFFLSNLDINHLKIL 272
A P+MM A +L SS F+K++ + I I GV+GVL AAF + L + L +
Sbjct: 209 AFPIMMGSCAFLLPMSSTKFVKNNAYDKKASISISIFGVVGVLIAAFIVKELPVRALTWM 268
Query: 273 VVFIAFFTGATLLRS 287
VV + +T T+ ++
Sbjct: 269 VVCVIMYTSITMFKA 283
>gi|90580096|ref|ZP_01235904.1| hypothetical integral membrane protein [Vibrio angustum S14]
gi|90438981|gb|EAS64164.1| hypothetical integral membrane protein [Vibrio angustum S14]
Length = 300
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 89/243 (36%), Positives = 144/243 (59%), Gaps = 5/243 (2%)
Query: 46 IGYVTDLLDTLGIGTFATTTTLFKATKLVEDDRKIPATMSTAHVVPVLVEALCFVTIVKV 105
IG + DTLG+G+FA T +K KL+ DD+ +P TM+ V+ +V+AL F+T V V
Sbjct: 44 IGGFANFCDTLGVGSFAIMTAGYKQFKLI-DDQVLPGTMNCQAVLATVVQALIFLTAVNV 102
Query: 106 DITTLVCMAAASFTGAFVGTRITKNWNTQQVQRVL-GILLIIAALVMVYRMLTNPGAGIS 164
D TL+ + ++ GA VG R+ NW+ Q ++ V+ G LL++A L++ ++ P G S
Sbjct: 103 DSITLLSLVVSACLGATVGARLVSNWDRQHIRIVMSGALLVVAGLMLAGQLKLFPLGGTS 162
Query: 165 SQIRGLKGIWLLVGIIFDFIIGMLMTMGLGNYAPELIFFSLMGINPSIALPVMMLDAAMI 224
GL G L +GI +F+ G LMT+G+G YAP + ++G+NP A PVMM +
Sbjct: 163 ---LGLSGWKLAIGIAGNFLFGALMTVGIGLYAPCMTMIYMLGMNPLAAFPVMMCSCGFL 219
Query: 225 LTASSIAFIKSDRVHWPGTFGIIIGGVLGVLTAAFFLSNLDINHLKILVVFIAFFTGATL 284
S+ +F++ D+++ + + I G +GV+ AA+ + +LD+ L LV + F+T T+
Sbjct: 220 GFFSAGSFLRRDKINSRASVAVAITGPIGVVIAAYLVKSLDMKVLAWLVCGVVFYTSLTM 279
Query: 285 LRS 287
RS
Sbjct: 280 YRS 282
>gi|153941311|ref|YP_001391770.1| hypothetical protein CLI_2532 [Clostridium botulinum F str.
Langeland]
gi|152937207|gb|ABS42705.1| putative membrane protein [Clostridium botulinum F str. Langeland]
Length = 289
Score = 137 bits (345), Expect = 8e-31, Method: Composition-based stats.
Identities = 87/243 (35%), Positives = 145/243 (59%), Gaps = 5/243 (2%)
Query: 46 IGYVTDLLDTLGIGTFATTTTLFKATKLVEDDRKIPATMSTAHVVPVLVEALCFVTIVKV 105
+G++ + DTLGIG+FA T + + KL ED R +P T++ + +PV+ EAL F+T++KV
Sbjct: 45 VGFIANFFDTLGIGSFAPLTAMLRFLKLTED-RVLPGTLNVSCTIPVVTEALIFITVIKV 103
Query: 106 DITTLVCMAAASFTGAFVGTRITKNWNTQQVQRVLGI-LLIIAALVMVYRMLTNPGAGIS 164
D TL M ++ GA VG I ++ ++VQ +GI LLI+A L++ ++ P G +
Sbjct: 104 DPVTLFAMLISATVGAVVGAGIVSKFDEKKVQLGMGIALLIVACLMLASQLKLMPVGGTA 163
Query: 165 SQIRGLKGIWLLVGIIFDFIIGMLMTMGLGNYAPELIFFSLMGINPSIALPVMMLDAAMI 224
GL G L++ +I +F +G LMT+G+G YAP + +G++P +A P+MM A +
Sbjct: 164 I---GLTGTKLVIAVIANFFLGALMTLGIGLYAPCMALVFALGMSPKVAFPIMMGSCAYL 220
Query: 225 LTASSIAFIKSDRVHWPGTFGIIIGGVLGVLTAAFFLSNLDINHLKILVVFIAFFTGATL 284
+ A+S F+K + + I I GV+ VL AA+ + L +N L LV+ + +T T+
Sbjct: 221 MPAASAKFVKEGAYNRKASMAITIFGVIAVLIAAYIVKELPLNILTWLVIVVIIYTSTTM 280
Query: 285 LRS 287
++
Sbjct: 281 FKA 283
>gi|150388507|ref|YP_001318556.1| hypothetical protein Amet_0672 [Alkaliphilus metalliredigens QYMF]
gi|149948369|gb|ABR46897.1| conserved hypothetical integral membrane protein [Alkaliphilus
metalliredigens QYMF]
Length = 291
Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats.
Identities = 90/247 (36%), Positives = 148/247 (59%), Gaps = 5/247 (2%)
Query: 44 FWIGYVTDLLDTLGIGTFATTTTLFKATKLVEDDRKIPATMSTAHVVPVLVEALCFVTIV 103
F +G+VT+ DTLGIG+FA TT FK LV+D R IP T++ H +PV+V + F+ V
Sbjct: 38 FTVGFVTNFFDTLGIGSFAPTTAWFKGAGLVKD-RIIPGTLNVGHTLPVIVMSFIFIQRV 96
Query: 104 KVDITTLVCMAAASFTGAFVGTRITKNWNTQQVQRVLGI-LLIIAALVMVYRMLTNPGAG 162
+V+ TL M AA+ GA++G I ++VQ +GI LLI A +++ R+ P G
Sbjct: 97 EVEPLTLALMLAAAVIGAYLGADIVSGLPERKVQLGMGIALLITAGFMLLGRLDLMPAGG 156
Query: 163 ISSQIRGLKGIWLLVGIIFDFIIGMLMTMGLGNYAPELIFFSLMGINPSIALPVMMLDAA 222
+ GL G L++ ++ +F +G LMT+G+G YAP + +G++P +A P+MM A
Sbjct: 157 DAI---GLSGTRLIIAVVANFFLGALMTLGIGLYAPCMALIYALGMSPIVAFPIMMGSCA 213
Query: 223 MILTASSIAFIKSDRVHWPGTFGIIIGGVLGVLTAAFFLSNLDINHLKILVVFIAFFTGA 282
++ +S+ F+K+ ++ G+ +GG+ V AA+ ++ L +N L LV+ + +T
Sbjct: 214 YLMPTASVKFVKNGALNTKAAVGLALGGIPAVFIAAYLVTGLPMNVLTWLVIAVILYTAV 273
Query: 283 TLLRSSI 289
T+LRS +
Sbjct: 274 TMLRSGM 280
>gi|153932925|ref|YP_001384647.1| hypothetical protein CLB_2340 [Clostridium botulinum A str. ATCC
19397]
gi|153937676|ref|YP_001388166.1| hypothetical protein CLC_2323 [Clostridium botulinum A str. Hall]
gi|152928969|gb|ABS34469.1| putative membrane protein [Clostridium botulinum A str. ATCC 19397]
gi|152933590|gb|ABS39089.1| putative membrane protein [Clostridium botulinum A str. Hall]
Length = 289
Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats.
Identities = 87/243 (35%), Positives = 145/243 (59%), Gaps = 5/243 (2%)
Query: 46 IGYVTDLLDTLGIGTFATTTTLFKATKLVEDDRKIPATMSTAHVVPVLVEALCFVTIVKV 105
+G++ + DTLGIG+FA T + + KL ED R +P T++ + +PV+ EAL F+T++KV
Sbjct: 45 VGFIANFFDTLGIGSFAPLTAMLRFLKLTED-RVLPGTLNVSCTIPVVTEALIFITVIKV 103
Query: 106 DITTLVCMAAASFTGAFVGTRITKNWNTQQVQRVLGI-LLIIAALVMVYRMLTNPGAGIS 164
D TL M ++ GA VG I ++ ++VQ +GI LLI+A L++ ++ P G +
Sbjct: 104 DPITLFAMLISATVGAVVGAGIVSKFDEKKVQLGMGIALLIVACLMLASQLKLMPVGGTA 163
Query: 165 SQIRGLKGIWLLVGIIFDFIIGMLMTMGLGNYAPELIFFSLMGINPSIALPVMMLDAAMI 224
GL G L++ +I +F +G LMT+G+G YAP + +G++P +A P+MM A +
Sbjct: 164 I---GLTGTKLVIAVIANFFLGALMTLGIGLYAPCMALVFALGMSPKVAFPIMMGSCAYL 220
Query: 225 LTASSIAFIKSDRVHWPGTFGIIIGGVLGVLTAAFFLSNLDINHLKILVVFIAFFTGATL 284
+ A+S F+K + + I I GV+ VL AA+ + L +N L LV+ + +T T+
Sbjct: 221 MPAASAKFVKEGAYNRKASMAITIFGVIAVLIAAYIVKELPLNILTWLVIVVIIYTSTTM 280
Query: 285 LRS 287
++
Sbjct: 281 FKA 283
>gi|90411643|ref|ZP_01219653.1| hypothetical integral membrane protein [Photobacterium profundum
3TCK]
gi|90327533|gb|EAS43886.1| hypothetical integral membrane protein [Photobacterium profundum
3TCK]
Length = 281
Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats.
Identities = 92/244 (37%), Positives = 148/244 (60%), Gaps = 5/244 (2%)
Query: 45 WIGYVTDLLDTLGIGTFATTTTLFKATKLVEDDRKIPATMSTAHVVPVLVEALCFVTIVK 104
+IG + DTLG+G+FA T +K KL+ DD+ +P T++ V+ +V++L F+T V
Sbjct: 27 FIGGFANFCDTLGVGSFAIKTAGYKQFKLI-DDQLLPGTLNCQAVLATVVQSLIFLTAVD 85
Query: 105 VDITTLVCMAAASFTGAFVGTRITKNWNTQQVQRVLGI-LLIIAALVMVYRMLTNPGAGI 163
VD TTLV + A+ GA G R+ +W+ Q ++ V+ I LLI+A L++ ++ P G+
Sbjct: 86 VDPTTLVSLVIAACLGATWGARLVSSWDRQVIRLVMSIALLIVAGLMLAGQLKLFPLGGM 145
Query: 164 SSQIRGLKGIWLLVGIIFDFIIGMLMTMGLGNYAPELIFFSLMGINPSIALPVMMLDAAM 223
S GL G L VGII +F+ G LMT+G+G YAP + L+G++P A P+MM A
Sbjct: 146 S---LGLTGWKLAVGIIGNFLFGALMTVGIGLYAPCMTMVYLLGMHPLAAFPIMMCSCAF 202
Query: 224 ILTASSIAFIKSDRVHWPGTFGIIIGGVLGVLTAAFFLSNLDINHLKILVVFIAFFTGAT 283
+ S+ +FI+ +R++ + I G +GV+ AA+ + +LD++ L LV + +T AT
Sbjct: 203 LSFFSAGSFIRMNRINSRAAIVVAITGPIGVVIAAYLVQSLDMHVLAWLVTAVVLYTSAT 262
Query: 284 LLRS 287
+ RS
Sbjct: 263 MYRS 266
>gi|89075761|ref|ZP_01162149.1| hypothetical integral membrane protein [Photobacterium sp. SKA34]
gi|89048493|gb|EAR54068.1| hypothetical integral membrane protein [Photobacterium sp. SKA34]
Length = 315
Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats.
Identities = 88/243 (36%), Positives = 142/243 (58%), Gaps = 5/243 (2%)
Query: 46 IGYVTDLLDTLGIGTFATTTTLFKATKLVEDDRKIPATMSTAHVVPVLVEALCFVTIVKV 105
IG + DTLG+G+FA T +K KL+ DD+ +P TM+ V+ +V+AL F+T V V
Sbjct: 59 IGGFANFCDTLGVGSFAIMTAGYKQFKLI-DDQVLPGTMNCQAVLATVVQALIFLTAVNV 117
Query: 106 DITTLVCMAAASFTGAFVGTRITKNWNTQQVQRVL-GILLIIAALVMVYRMLTNPGAGIS 164
D TL+ + ++ GA VG R+ NW+ Q ++ V+ G LL++A L++ ++ P G S
Sbjct: 118 DSITLLSLVVSACLGATVGARLVSNWDRQHIRLVMSGALLVVAGLMLAGQLKLFPLGGTS 177
Query: 165 SQIRGLKGIWLLVGIIFDFIIGMLMTMGLGNYAPELIFFSLMGINPSIALPVMMLDAAMI 224
GL G L +GI +F+ G LMT+G+G YAP + ++G+NP A PVMM +
Sbjct: 178 ---LGLSGWKLAIGIAGNFLFGALMTVGIGLYAPCMTMIFMLGMNPLAAFPVMMCSCGFL 234
Query: 225 LTASSIAFIKSDRVHWPGTFGIIIGGVLGVLTAAFFLSNLDINHLKILVVFIAFFTGATL 284
S+ F++ D+++ + + I G +GV+ AA+ + +LD+ L LV + +T T+
Sbjct: 235 GFFSAGGFLRRDKINSRASVAVAITGPIGVVIAAYLVKSLDMKLLAWLVCGVVLYTSLTM 294
Query: 285 LRS 287
RS
Sbjct: 295 YRS 297
>gi|59711878|ref|YP_204654.1| hypothetical membrane spanning protein [Vibrio fischeri ES114]
gi|59479979|gb|AAW85766.1| hypothetical membrane spanning protein [Vibrio fischeri ES114]
Length = 293
Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats.
Identities = 92/243 (37%), Positives = 143/243 (58%), Gaps = 5/243 (2%)
Query: 46 IGYVTDLLDTLGIGTFATTTTLFKATKLVEDDRKIPATMSTAHVVPVLVEALCFVTIVKV 105
IG + DTLG+G+FA T +K L+ DD+ +P T++ + + +AL F+T V V
Sbjct: 44 IGGFANFCDTLGVGSFAIKTAGYKQFNLI-DDKVLPGTLNAQATMATVFQALIFLTAVNV 102
Query: 106 DITTLVCMAAASFTGAFVGTRITKNWNTQQVQRVL-GILLIIAALVMVYRMLTNPGAGIS 164
D+TTL+ + A+ GA VG R+ N++ Q ++ ++ G LL++A L+ R+ P G
Sbjct: 103 DLTTLLSLIIAACVGATVGARLVSNFDRQLIRLIMAGALLVVALLMFAGRLDLFPLGG-- 160
Query: 165 SQIRGLKGIWLLVGIIFDFIIGMLMTMGLGNYAPELIFFSLMGINPSIALPVMMLDAAMI 224
+ GL G L++GII +FI G LMT+G+G YAP + L+G+NP A P+MM A +
Sbjct: 161 -EELGLSGEKLVIGIIGNFIFGALMTVGIGLYAPCMTMIYLLGMNPLAAFPIMMCSCAFL 219
Query: 225 LTASSIAFIKSDRVHWPGTFGIIIGGVLGVLTAAFFLSNLDINHLKILVVFIAFFTGATL 284
S+ FIK V+ + + I G +GVL AAF + +LD++ L LV F+ +T +
Sbjct: 220 CFFSAGGFIKQKAVNSRASLVVAITGPIGVLIAAFIVKSLDVDMLAWLVAFVVLYTAVMM 279
Query: 285 LRS 287
LRS
Sbjct: 280 LRS 282
>gi|148380429|ref|YP_001254970.1| integral membrane protein [Clostridium botulinum A str. ATCC 3502]
gi|148289913|emb|CAL84023.1| putative integral membrane protein [Clostridium botulinum A str.
ATCC 3502]
Length = 289
Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 87/243 (35%), Positives = 144/243 (59%), Gaps = 5/243 (2%)
Query: 46 IGYVTDLLDTLGIGTFATTTTLFKATKLVEDDRKIPATMSTAHVVPVLVEALCFVTIVKV 105
+G++ + DTLGIG+FA T + + KL ED R +P T++ + +PV+ EAL F+T++KV
Sbjct: 45 VGFIANFFDTLGIGSFAPLTAMLRFLKLTED-RVLPGTLNVSCTIPVVTEALIFITVIKV 103
Query: 106 DITTLVCMAAASFTGAFVGTRITKNWNTQQVQRVLGI-LLIIAALVMVYRMLTNPGAGIS 164
D TL M ++ GA VG I + ++VQ +GI LLI+A L++ ++ P G +
Sbjct: 104 DPITLFAMLISATVGAVVGAGIVSKLDEKKVQLGMGIALLIVACLMLASQLKLMPVGGTA 163
Query: 165 SQIRGLKGIWLLVGIIFDFIIGMLMTMGLGNYAPELIFFSLMGINPSIALPVMMLDAAMI 224
GL G L++ +I +F +G LMT+G+G YAP + +G++P +A P+MM A +
Sbjct: 164 I---GLTGTKLVIAVIANFFLGALMTLGIGLYAPCMALVFALGMSPKVAFPIMMGSCAYL 220
Query: 225 LTASSIAFIKSDRVHWPGTFGIIIGGVLGVLTAAFFLSNLDINHLKILVVFIAFFTGATL 284
+ A+S F+K + + I I GV+ VL AA+ + L +N L LV+ + +T T+
Sbjct: 221 MPAASAKFVKEGAYNRKASMAITIFGVIAVLIAAYIVKELPLNILTWLVIVVIIYTSTTM 280
Query: 285 LRS 287
++
Sbjct: 281 FKA 283
>gi|54308288|ref|YP_129308.1| hypothetical integral membrane protein [Photobacterium profundum
SS9]
gi|46912716|emb|CAG19506.1| hypothetical integral membrane protein [Photobacterium profundum
SS9]
Length = 281
Score = 134 bits (337), Expect = 7e-30, Method: Composition-based stats.
Identities = 89/244 (36%), Positives = 147/244 (60%), Gaps = 5/244 (2%)
Query: 45 WIGYVTDLLDTLGIGTFATTTTLFKATKLVEDDRKIPATMSTAHVVPVLVEALCFVTIVK 104
+IG + DTLG+G+FA T +K KL+ DD+ +P T++ V+ +V++L F+T V
Sbjct: 27 FIGGFANFCDTLGVGSFAIKTAGYKQFKLI-DDQLLPGTLNCQAVLATVVQSLIFLTAVD 85
Query: 105 VDITTLVCMAAASFTGAFVGTRITKNWNTQQVQRVLGI-LLIIAALVMVYRMLTNPGAGI 163
VD TTLV + A+ GA G R+ +W+ Q ++ V+ I LLI+A L++ ++ P G+
Sbjct: 86 VDPTTLVSLVIAACLGATWGARLVSSWDRQVIRLVMSIALLIVAGLMLAGQLKLFPLGGM 145
Query: 164 SSQIRGLKGIWLLVGIIFDFIIGMLMTMGLGNYAPELIFFSLMGINPSIALPVMMLDAAM 223
S GL G L GI+ +F+ G LMT+G+G YAP ++ L+G++P A P+MM A
Sbjct: 146 S---LGLTGWKLAGGILGNFLFGALMTVGIGLYAPCMVMVYLLGMHPLAAFPIMMCSCAF 202
Query: 224 ILTASSIAFIKSDRVHWPGTFGIIIGGVLGVLTAAFFLSNLDINHLKILVVFIAFFTGAT 283
+ S+ +FI+ +R++ + I G +GV+ AA+ + +LD++ L LV + +T T
Sbjct: 203 LSFFSAGSFIRMNRINSRAAIAVAITGPIGVVIAAYLVKSLDMHVLAWLVTAVVLYTSVT 262
Query: 284 LLRS 287
+ RS
Sbjct: 263 MYRS 266
>gi|148381128|ref|YP_001255669.1| membrane protein [Clostridium botulinum A str. ATCC 3502]
gi|153934189|ref|YP_001385503.1| hypothetical protein CLB_3216 [Clostridium botulinum A str. ATCC
19397]
gi|153937409|ref|YP_001388909.1| hypothetical protein CLC_3090 [Clostridium botulinum A str. Hall]
gi|148290612|emb|CAL84741.1| putative membrane protein [Clostridium botulinum A str. ATCC 3502]
gi|152930233|gb|ABS35733.1| putative membrane protein [Clostridium botulinum A str. ATCC 19397]
gi|152933323|gb|ABS38822.1| putative membrane protein [Clostridium botulinum A str. Hall]
Length = 291
Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats.
Identities = 93/285 (32%), Positives = 159/285 (55%), Gaps = 6/285 (2%)
Query: 6 ILNTIQLLLISLITWIMGTILLHTRQHQINLKE-KFLTGFWIGYVTDLLDTLGIGTFATT 64
++ I LI L W + +H+ NL+ + IG++ + D LGIG FA
Sbjct: 1 MVKAIWFALIILAVWFGIILFRDFVKHKNNLENVSWGKTAIIGFIVNFFDVLGIGAFAPQ 60
Query: 65 TTLFKATKLVEDDRKIPATMSTAHVVPVLVEALCFVTIVKVDITTLVCMAAASFTGAFVG 124
T L K TK ED R +P T+++A+ +PVL+EA+ F+ I++VD TL+ M A+ GA +G
Sbjct: 61 TALLKLTKQTED-RVLPGTLNSANTIPVLIEAIIFIKIIEVDSITLISMLVAATIGAIIG 119
Query: 125 TRITKNWNTQQVQRVLGILLIIAALVMVY-RMLTNPGAGISSQIRGLKGIWLLVGIIFDF 183
I + +Q +G L++ A M+ +M PG G + GL G L++ ++ +F
Sbjct: 120 AGIVSKLPEKIIQLTMGCALLVTAYFMLAGQMHWMPGGGDAI---GLHGTKLIIAVVINF 176
Query: 184 IIGMLMTMGLGNYAPELIFFSLMGINPSIALPVMMLDAAMILTASSIAFIKSDRVHWPGT 243
I+G LMT G+G YAP + ++G++P +A P+MM A ++ +S F+K + +
Sbjct: 177 ILGALMTAGIGLYAPCMALVFMLGMSPKVAFPIMMGSCAFLMPPASAKFVKEGAYNRKAS 236
Query: 244 FGIIIGGVLGVLTAAFFLSNLDINHLKILVVFIAFFTGATLLRSS 288
+ + G +GVL AAF + +L ++ L+ LV+ + +T +L+S+
Sbjct: 237 VSMCLAGTVGVLIAAFLVKSLPMDILRWLVIAVVIYTATIMLKSA 281
>gi|153938827|ref|YP_001392531.1| hypothetical protein CLI_3319 [Clostridium botulinum F str.
Langeland]
gi|152934723|gb|ABS40221.1| putative membrane protein [Clostridium botulinum F str. Langeland]
Length = 291
Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 93/285 (32%), Positives = 159/285 (55%), Gaps = 6/285 (2%)
Query: 6 ILNTIQLLLISLITWIMGTILLHTRQHQINLKE-KFLTGFWIGYVTDLLDTLGIGTFATT 64
++ I LI L W + +H+ NL+ + IG++ + D LGIG FA
Sbjct: 1 MVKAIWFALIILAVWFGIILFRDFVKHKNNLENVSWGKTAIIGFIVNFFDVLGIGAFAPQ 60
Query: 65 TTLFKATKLVEDDRKIPATMSTAHVVPVLVEALCFVTIVKVDITTLVCMAAASFTGAFVG 124
T L K TK ED R +P T+++A+ +PVL+EA+ F+ I++VD TL+ M A+ GA +G
Sbjct: 61 TALLKLTKQTED-RLLPGTLNSANTIPVLIEAIIFIKIIEVDSITLISMLVAATIGAVIG 119
Query: 125 TRITKNWNTQQVQRVLGILLIIAALVMVY-RMLTNPGAGISSQIRGLKGIWLLVGIIFDF 183
I + +Q +G L++ A M+ +M PG G + GL G L++ ++ +F
Sbjct: 120 AGIVSKLPEKIIQLTMGCALLVTAYFMLAGQMHWMPGGGDAI---GLHGTKLIIAVVINF 176
Query: 184 IIGMLMTMGLGNYAPELIFFSLMGINPSIALPVMMLDAAMILTASSIAFIKSDRVHWPGT 243
I+G LMT G+G YAP + ++G++P +A P+MM A ++ +S F+K + +
Sbjct: 177 ILGALMTAGIGLYAPCMALVFMLGMSPKVAFPIMMGSCAFLMPPASAKFVKEGAYNRKAS 236
Query: 244 FGIIIGGVLGVLTAAFFLSNLDINHLKILVVFIAFFTGATLLRSS 288
+ + G +GVL AAF + +L ++ L+ LV+ + +T +L+S+
Sbjct: 237 VSMCLAGTVGVLIAAFLVKSLPMDILRWLVIAVVIYTATIMLKSA 281
>gi|148380418|ref|YP_001254959.1| membrane protein [Clostridium botulinum A str. ATCC 3502]
gi|153932682|ref|YP_001384637.1| hypothetical protein CLB_2326 [Clostridium botulinum A str. ATCC
19397]
gi|153935002|ref|YP_001388154.1| hypothetical protein CLC_2310 [Clostridium botulinum A str. Hall]
gi|148289902|emb|CAL84011.1| putative membrane protein [Clostridium botulinum A str. ATCC 3502]
gi|152928726|gb|ABS34226.1| putative membrane protein [Clostridium botulinum A str. ATCC 19397]
gi|152930916|gb|ABS36415.1| putative membrane protein [Clostridium botulinum A str. Hall]
Length = 292
Score = 127 bits (319), Expect = 8e-28, Method: Composition-based stats.
Identities = 95/285 (33%), Positives = 157/285 (55%), Gaps = 4/285 (1%)
Query: 4 RLILNTIQLLLISLITWIMGTILLHTRQHQINLKEKFLTGFWIGYVTDLLDTLGIGTFAT 63
+++L + +L I + + T++ I F G +G++T+ DTLGIG+F+
Sbjct: 3 KVVLGLLIILTIFFAVAFLRDYIKATKEGNIEKTNFFALGV-VGFITNFFDTLGIGSFSP 61
Query: 64 TTTLFKATKLVEDDRKIPATMSTAHVVPVLVEALCFVTIVKVDITTLVCMAAASFTGAFV 123
TT L K KL +D R +P T++ A VPV EA+ F+ ++V+ TL + A+ GA V
Sbjct: 62 TTALLKNFKLSKD-RTLPGTLNVACTVPVAAEAILFINGIEVEPVTLFSLLIAATVGAVV 120
Query: 124 GTRITKNWNTQQVQRVLGILLIIAALVMVYRMLTNPGAGISSQIRGLKGIWLLVGIIFDF 183
+ + ++VQ +G LII ALVM+ L AG GL G L++ II +F
Sbjct: 121 AAGVVSKLDERKVQFAMGTALIIVALVMLAGKLNLMPAG--GDAVGLHGAKLIIAIIGNF 178
Query: 184 IIGMLMTMGLGNYAPELIFFSLMGINPSIALPVMMLDAAMILTASSIAFIKSDRVHWPGT 243
I+G LMT+G+G YAP + +G++P +A P+MM A ++ A+S+ FIK +
Sbjct: 179 ILGALMTLGIGLYAPCMALVYSLGMSPKVAFPIMMGSCAFLMPAASLKFIKEGAYDRKAS 238
Query: 244 FGIIIGGVLGVLTAAFFLSNLDINHLKILVVFIAFFTGATLLRSS 288
I + G++GV A + + +L +N L LV+ + +T A + +S+
Sbjct: 239 MAITVFGLVGVFIAYYLVKSLPLNILTWLVIVVIIYTSAMMFKSA 283
>gi|153939456|ref|YP_001391760.1| hypothetical protein CLI_2518 [Clostridium botulinum F str.
Langeland]
gi|152935352|gb|ABS40850.1| putative membrane protein [Clostridium botulinum F str. Langeland]
Length = 292
Score = 127 bits (319), Expect = 8e-28, Method: Composition-based stats.
Identities = 95/285 (33%), Positives = 157/285 (55%), Gaps = 4/285 (1%)
Query: 4 RLILNTIQLLLISLITWIMGTILLHTRQHQINLKEKFLTGFWIGYVTDLLDTLGIGTFAT 63
+++L + +L I + + T++ I F G +G++T+ DTLGIG+F+
Sbjct: 3 KVVLGLLIILTIFFAVAFLRDYIKATKEGNIEKTNFFALGV-VGFITNFFDTLGIGSFSP 61
Query: 64 TTTLFKATKLVEDDRKIPATMSTAHVVPVLVEALCFVTIVKVDITTLVCMAAASFTGAFV 123
TT L K KL +D R +P T++ A VPV EA+ F+ ++V+ TL + A+ GA V
Sbjct: 62 TTALLKNFKLSKD-RTLPGTLNVACTVPVAAEAILFINGIEVEPVTLFSLLIAATVGAVV 120
Query: 124 GTRITKNWNTQQVQRVLGILLIIAALVMVYRMLTNPGAGISSQIRGLKGIWLLVGIIFDF 183
+ + ++VQ +G LII ALVM+ L AG GL G L++ II +F
Sbjct: 121 AAGVVSKLDERKVQFAMGTALIIVALVMLAGKLNLMPAG--GDAVGLHGAKLIIAIIGNF 178
Query: 184 IIGMLMTMGLGNYAPELIFFSLMGINPSIALPVMMLDAAMILTASSIAFIKSDRVHWPGT 243
I+G LMT+G+G YAP + +G++P +A P+MM A ++ A+S+ FIK +
Sbjct: 179 ILGALMTLGIGLYAPCMALVYSLGMSPKVAFPIMMGSCAFLMPAASLKFIKEGAYDRKAS 238
Query: 244 FGIIIGGVLGVLTAAFFLSNLDINHLKILVVFIAFFTGATLLRSS 288
I + G++GV A + + +L +N L LV+ + +T A + +S+
Sbjct: 239 MAITVFGLVGVFIAYYLVKSLPLNILTWLVIVVIIYTAAMMFKSA 283
>gi|145297856|ref|YP_001140697.1| conserved integral membrane protein [Aeromonas salmonicida subsp.
salmonicida A449]
gi|142850628|gb|ABO88949.1| conserved integral membrane protein [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 286
Score = 120 bits (302), Expect = 8e-26, Method: Composition-based stats.
Identities = 86/251 (34%), Positives = 139/251 (55%), Gaps = 9/251 (3%)
Query: 42 TGFW----IGYVTDLLDTLGIGTFATTTTLFKATKLVEDDRKIPATMSTAHVVPVLVEAL 97
T FW IG+V + LDTLG+G+FA T FK KL+ DDR +P T++ V+P + ++L
Sbjct: 23 TPFWPVAAIGFVANFLDTLGVGSFAVKTACFKQFKLI-DDRLLPGTLNGQCVLPTVAQSL 81
Query: 98 CFVTIVKVDITTLVCMAAASFTGAFVGTRITKNWNTQQVQRVLGI-LLIIAALVMVYRML 156
F+ +VKVD T + M A+ GA G R +++ Q ++ V+ + LL++A L+ +
Sbjct: 82 IFIGVVKVDPITFISMMVAAAAGAAWGARHVASFDRQTIRLVMAVSLLVVAGLIFAGLLG 141
Query: 157 TNPGAGISSQIRGLKGIWLLVGIIFDFIIGMLMTMGLGNYAPELIFFSLMGINPSIALPV 216
+ GL G L + ++ +FI G+LM +G+G +AP + L+G+NP A P+
Sbjct: 142 L---FPLGGDAMGLTGYKLGIALLGNFIFGVLMNVGIGLFAPCMTLVYLLGMNPMAAFPI 198
Query: 217 MMLDAAMILTASSIAFIKSDRVHWPGTFGIIIGGVLGVLTAAFFLSNLDINHLKILVVFI 276
MM A++ S+ FI+ + I G +GV+ AA + ++D+ LK LV FI
Sbjct: 199 MMGSTAVLSVFSAGTFIRKGAFDARAVLAVAIFGPIGVVLAALLVQSMDMEMLKWLVAFI 258
Query: 277 AFFTGATLLRS 287
+T T+ S
Sbjct: 259 VIYTSWTMYAS 269
>gi|88711266|ref|ZP_01105354.1| hypothetical membrane spanning protein [Flavobacteriales bacterium
HTCC2170]
gi|88710207|gb|EAR02439.1| hypothetical membrane spanning protein [Flavobacteriales bacterium
HTCC2170]
Length = 286
Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats.
Identities = 80/244 (32%), Positives = 136/244 (55%), Gaps = 3/244 (1%)
Query: 46 IGYVTDLLDTLGIGTFATTTTLFKATKLVEDDRKIPATMSTAHVVPVLVEALCFVTIVKV 105
IG+V + D LGIG FA T + K TK ED R +P T++ A+ +PVL++AL F+ IV+V
Sbjct: 42 IGFVVNFFDVLGIGAFAPQTAMLKFTKQTED-RVLPGTLNVANTIPVLIQALIFIRIVEV 100
Query: 106 DITTLVCMAAASFTGAFVGTRITKNWNTQQVQRVLGILLIIAALVMVYRMLTNPGAGISS 165
+ TL+ M ++ GA +G I +++Q +G L++ A M+ + G
Sbjct: 101 EPITLLTMLLSAAGGAVLGAGIVAKLAVRKIQMTMGFALLVTAFFMLSGQMDWIQGG--G 158
Query: 166 QIRGLKGIWLLVGIIFDFIIGMLMTMGLGNYAPELIFFSLMGINPSIALPVMMLDAAMIL 225
+ GL G L V + +FI+G MT+G+G YAP + +G++P +A P+MM A ++
Sbjct: 159 EAIGLSGWKLAVAVGANFILGAFMTVGIGLYAPCMALIYALGMSPIVAFPIMMGSCAFLM 218
Query: 226 TASSIAFIKSDRVHWPGTFGIIIGGVLGVLTAAFFLSNLDINHLKILVVFIAFFTGATLL 285
+S FIK + + I G++ VL AAF + +L + L+ +V+ + +T +
Sbjct: 219 PPASAKFIKVGAYNRKAAVAMAIPGIIAVLLAAFLVKSLPLGTLRWVVIVVVIYTSIVMF 278
Query: 286 RSSI 289
+S++
Sbjct: 279 KSAL 282
>gi|42526125|ref|NP_971223.1| hypothetical protein TDE0609 [Treponema denticola ATCC 35405]
gi|41816237|gb|AAS11104.1| membrane protein, putative [Treponema denticola ATCC 35405]
Length = 296
Score = 114 bits (285), Expect = 7e-24, Method: Composition-based stats.
Identities = 78/246 (31%), Positives = 136/246 (55%), Gaps = 5/246 (2%)
Query: 48 YVTDLLDTLGIGTFATTTTLFKATKLVEDDRKIPATMSTAHVVPVLVEALCFVTIVKVDI 107
+V L T G+ +A +T ++ATK V DD+K+P T++T V+PV V AL ++ ++VDI
Sbjct: 51 FVLYFLSTFGVSDYALSTAFYRATKWV-DDKKLPGTLNTQCVLPVAVMALAYINSIEVDI 109
Query: 108 TTLVCMAAASFTGAFVGTRITKNWNTQQVQRVLGI-LLIIAALVMVYRMLTNPGAGISSQ 166
TLV + G+++ R + + ++RV+G LL L+++ +M P I +
Sbjct: 110 LTLVLCIVSQTLGSYILPRFVVKFPIKIIRRVIGFGLLGATVLILLGKMNLLP---IGGE 166
Query: 167 IRGLKGIWLLVGIIFDFIIGMLMTMGLGNYAPELIFFSLMGINPSIALPVMMLDAAMILT 226
+ GL GI L V ++ + G + T+G+G+Y ++ MG+NP IA P+MM +
Sbjct: 167 LTGLTGIKLWVTVVLFAVFGAMNTIGIGSYPVTMLTVYAMGLNPVIAFPIMMGACTFSVP 226
Query: 227 ASSIAFIKSDRVHWPGTFGIIIGGVLGVLTAAFFLSNLDINHLKILVVFIAFFTGATLLR 286
S+ +++ + TF G+LGVL A F + +++I+ L+ LV I ++G T+L
Sbjct: 227 VGSMEYVRLGQYARKITFISSFVGILGVLLAVFVVKSMNISMLQWLVAAILVYSGVTMLH 286
Query: 287 SSIIRR 292
R+
Sbjct: 287 QEYGRK 292
>gi|117618811|ref|YP_857992.1| hypothetical protein AHA_3522 [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117560218|gb|ABK37166.1| putative membrane protein [Aeromonas hydrophila subsp. hydrophila
ATCC 7966]
Length = 300
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 91/288 (31%), Positives = 156/288 (54%), Gaps = 10/288 (3%)
Query: 5 LILNTIQLLLISLITWIMGTILLHTRQHQINLKEKFLTGFW----IGYVTDLLDTLGIGT 60
+++N ++L+ I + + +L+ H+ E T FW IG+V + LDTLG+G+
Sbjct: 1 MLINLLRLIFI-ICALVFIFMLVRAWWHKRQQGELESTPFWPVAAIGFVANFLDTLGVGS 59
Query: 61 FATTTTLFKATKLVEDDRKIPATMSTAHVVPVLVEALCFVTIVKVDITTLVCMAAASFTG 120
FA T +K KL+ DDR +P T++ V+P + ++L F+ V+VD TL+ M A+ G
Sbjct: 60 FAVKTACYKQFKLI-DDRLLPGTLNGQCVLPTVTQSLIFIGAVQVDPLTLIGMMVAAAAG 118
Query: 121 AFVGTRITKNWNTQQVQRVLGI-LLIIAALVMVYRMLTNPGAGISSQIRGLKGIWLLVGI 179
A G R +++ Q ++ V+ + LL++A L+ + + GL G L + +
Sbjct: 119 AAWGARHVASFDRQTIRLVMAVSLLVVAGLIFAGLLGL---FPLGGDAMGLTGYKLGIAL 175
Query: 180 IFDFIIGMLMTMGLGNYAPELIFFSLMGINPSIALPVMMLDAAMILTASSIAFIKSDRVH 239
+ +FI G+LM +G+G +AP + L+G+NP A P+MM A++ S+ FI+
Sbjct: 176 LGNFIFGVLMNVGIGLFAPCMTLVYLLGMNPLAAFPIMMGSTAVLSVFSAGTFIRKGAFD 235
Query: 240 WPGTFGIIIGGVLGVLTAAFFLSNLDINHLKILVVFIAFFTGATLLRS 287
+ I G +GV+ AA + ++D+ LK LV FI +T T+ S
Sbjct: 236 AKAVLAVAIFGPVGVVLAAMLVKSMDMAMLKWLVAFIVIYTSWTMYAS 283
>gi|110004207|emb|CAK98545.1| conserved hypothetical transmembrane protein [Spiroplasma citri]
Length = 549
Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats.
Identities = 79/255 (30%), Positives = 134/255 (52%), Gaps = 18/255 (7%)
Query: 46 IGYVTDLLDTLGIGTFATTTTLFKATKLVEDDRKIPATMSTAHVVPVLVEALCFVTIVKV 105
IG+V LDT+G+G+FA T KATK+V++D +P T++ +P L+ FV + V
Sbjct: 234 IGFVGSFLDTIGVGSFAVATAGLKATKIVKNDALLPGTINIGLGIPNLIAGTTFVAAINV 293
Query: 106 DITTLVCMAAASFTGAFVGTRITKNWNTQQVQRVLGILLIIAALVMVYRMLTNPGAGISS 165
++ TLV + + G+FVG +TK + + + + I+L I A++M+ LT S
Sbjct: 294 EVLTLVLLVVGAILGSFVGAELTKRISAKHISLTMAIVLAIVAILMI---LTQLNVLPSG 350
Query: 166 QIRGLKGIWLLVGIIFDFIIGMLMTMGLGNYAPELIFFSLMGINPSIALPVMMLDAAMIL 225
GL+ L + I + G L G+G YAP L +L+G++ +A P+M L +
Sbjct: 351 NKTGLEVWQLGLAFILFMVYGGLQAFGIGLYAPALATIALLGMDIKVAFPIMTLASGSAF 410
Query: 226 TASSIAFIKSDRVHWPGTFGIIIGGVLGVLTAAFFLS-------------NLDINHLKIL 272
++ ++ K+++ FG+++GG LGV+ A FL+ ++ N+LK L
Sbjct: 411 PVAAYSYYKNNKYQPKTGFGLMLGGALGVVLA--FLTVFVGIEVGLGVKPDVFTNYLKWL 468
Query: 273 VVFIAFFTGATLLRS 287
V + F+ LL S
Sbjct: 469 AVIVVFYVAIMLLLS 483
>gi|153854964|ref|ZP_01996177.1| hypothetical protein DORLON_02183 [Dorea longicatena DSM 13814]
gi|149752461|gb|EDM62392.1| hypothetical protein DORLON_02183 [Dorea longicatena DSM 13814]
Length = 304
Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats.
Identities = 79/251 (31%), Positives = 126/251 (50%), Gaps = 1/251 (0%)
Query: 38 EKFLTGFWIGYVTDLLDTLGIGTFATTTTLFKATKLVEDDRKIPATMSTAHVVPVLVEAL 97
+++ + F +G + + LDTLG G++A +T ++K + DD IP T++ PV+ EA
Sbjct: 46 KQWASAFTVGIIANFLDTLGCGSYAPSTFMYKLFNQI-DDIDIPGTLNIGDTFPVIFEAF 104
Query: 98 CFVTIVKVDITTLVCMAAASFTGAFVGTRITKNWNTQQVQRVLGILLIIAALVMVYRMLT 157
F T V+ D L M + G+F I W +++ LG ++ A+VM+ + L
Sbjct: 105 IFTTSVECDPLFLWVMFICAAVGSFGFASIVTKWPRNKIRIALGCAMLPLAVVMLCKNLG 164
Query: 158 NPGAGISSQIRGLKGIWLLVGIIFDFIIGMLMTMGLGNYAPELIFFSLMGINPSIALPVM 217
G+ GL G L+V + + G LM +G G YAP + L+G++ PV
Sbjct: 165 VGPFGLVGTAVGLTGWKLIVAAALNVLWGALMDIGFGLYAPCMATCLLLGVDAQTCFPVF 224
Query: 218 MLDAAMILTASSIAFIKSDRVHWPGTFGIIIGGVLGVLTAAFFLSNLDINHLKILVVFIA 277
M A ++ A SI FIKS R T G IGG +GV A ++ L + L L+ +
Sbjct: 225 MGSCACLMPACSIEFIKSHRYDVAHTIGNAIGGCIGVFIAWKLVTGLPMFWLINLICLVL 284
Query: 278 FFTGATLLRSS 288
+T TLL ++
Sbjct: 285 VWTSYTLLSAA 295
>gi|29375221|ref|NP_814374.1| hypothetical protein EF0617 [Enterococcus faecalis V583]
gi|21693379|gb|AAM75326.1|AF454824_125 EF0125 [Enterococcus faecalis]
gi|29342680|gb|AAO80445.1| membrane protein, putative [Enterococcus faecalis V583]
Length = 292
Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats.
Identities = 82/243 (33%), Positives = 128/243 (52%), Gaps = 5/243 (2%)
Query: 48 YVTDLLDTLGIGTFATTTTLFKATKLVEDDRKIPATMSTAHVVPVLVEALCFVTIVKVDI 107
++T L T G+ FA T L+ K V +K+P T++T VVPV V AL ++T + V I
Sbjct: 47 FITFFLSTFGVSDFAIGTVLYPKLKWVSM-KKLPGTLNTQCVVPVAVMALSYITAINVGI 105
Query: 108 TTLVCMAAASFTGAFVGTRITKNWNTQQVQRVLGILLIIAA-LVMVYRMLTNPGAGISSQ 166
TL GA++G R + ++ +GI L+IAA L+ + +M P G +S+
Sbjct: 106 KTLAVCIICQIIGAYLGPRFVVKLPEKTIKLFVGIGLVIAAFLIFMGQMNWIPSNGTASE 165
Query: 167 IRGLKGIWLLVGIIFDFIIGMLMTMGLGNYAPELIFFSLMGINPSIALPVMMLDAAMILT 226
+ G G +L G + F+ G L +G+G+YA ++ L+G+NP A P+MM +
Sbjct: 166 LYG--GKLILAGFLL-FVYGALNNIGIGSYALTMVTVYLLGLNPVAAFPIMMGACTFSVP 222
Query: 227 ASSIAFIKSDRVHWPGTFGIIIGGVLGVLTAAFFLSNLDINHLKILVVFIAFFTGATLLR 286
S+ FIK D T GVLGVL A F + +LD LK +V+ + ++ T+L
Sbjct: 223 IGSVQFIKFDEYSRKITLFTSTFGVLGVLVAVFLVKSLDTYILKWIVILVLLYSAYTMLS 282
Query: 287 SSI 289
S +
Sbjct: 283 SQL 285
>gi|116493899|ref|YP_805633.1| hypothetical protein LSEI_0331 [Lactobacillus casei ATCC 334]
gi|116104049|gb|ABJ69191.1| hypothetical protein LSEI_0331 [Lactobacillus casei ATCC 334]
Length = 289
Score = 107 bits (267), Expect = 9e-22, Method: Composition-based stats.
Identities = 83/241 (34%), Positives = 128/241 (53%), Gaps = 5/241 (2%)
Query: 48 YVTDLLDTLGIGTFATTTTLFKATKLVEDDRKIPATMSTAHVVPVLVEALCFVTIVKVDI 107
++ LL T GI FA +T L+ K V +K+P T++T VVPV AL ++T + VDI
Sbjct: 46 FIIFLLSTFGISDFAISTALYPKAKWVSI-KKLPGTLNTQCVVPVAAMALSYITAITVDI 104
Query: 108 TTLVCMAAASFTGAFVGTRITKNWNTQQVQRVLGILLIIAAL-VMVYRMLTNPGAGISSQ 166
TL A+ GA++G R +++ + LIIAAL ++ + P G ++
Sbjct: 105 KTLAVCIIAAVIGAYIGPRFVVKLPANTIKKFVTAGLIIAALMILAGKFNWIPANGTATS 164
Query: 167 IRGLKGIWLLVGIIFDFIIGMLMTMGLGNYAPELIFFSLMGINPSIALPVMMLDAAMILT 226
+ G K L++ I FI G L +G+G+YA + MG+NPS A P+MM A ++
Sbjct: 165 LSGWK---LMLTAILLFIYGALNNIGIGSYALTMATVYAMGLNPSAAFPIMMGAATFSVS 221
Query: 227 ASSIAFIKSDRVHWPGTFGIIIGGVLGVLTAAFFLSNLDINHLKILVVFIAFFTGATLLR 286
SSI F+K T GVLGVL A FF+ +LD + L+ LV+ + ++ ++
Sbjct: 222 TSSIQFVKLADYSRKITLFTSTFGVLGVLVAVFFVKSLDTSMLQWLVIIVLLYSAISMAL 281
Query: 287 S 287
S
Sbjct: 282 S 282
>gi|90962248|ref|YP_536164.1| Hypothetical membrane spanning protein [Lactobacillus salivarius
subsp. salivarius UCC118]
gi|90821442|gb|ABE00081.1| Hypothetical membrane spanning protein [Lactobacillus salivarius
subsp. salivarius UCC118]
Length = 288
Score = 105 bits (261), Expect = 5e-21, Method: Composition-based stats.
Identities = 88/281 (31%), Positives = 142/281 (50%), Gaps = 9/281 (3%)
Query: 10 IQLLLISLITWIMGTILLHTR-QHQINLKEKFLTGFWIG---YVTDLLDTLGIGTFATTT 65
I L ++ ++ T+ + +H+ KE+ W+ ++ L T GI FA T
Sbjct: 5 ILLTMVVIVNGYFATVFIRDLLKHKQEFKEEPADSKWLALSSFIIFFLSTFGISDFAIGT 64
Query: 66 TLFKATKLVEDDRKIPATMSTAHVVPVLVEALCFVTIVKVDITTLVCMAAASFTGAFVGT 125
L++ K V +K+P T++T V+PV V AL ++T + V I TL+ GA++G
Sbjct: 65 VLYQKAKWVSM-KKLPGTLNTECVIPVAVMALSYITGISVGIKTLLVCIICQVIGAYLGP 123
Query: 126 RITKNWNTQQVQRVLGILLIIAALVMVYRMLT-NPGAGISSQIRGLKGIWLLVGIIFDFI 184
R + ++ +GI LIIA+L++V L P G ++++ G K I L G + F+
Sbjct: 124 RFVVKLPEKTIKVFVGIGLIIASLLIVAGQLKLIPSNGTATELYGWKLI--LAGFLL-FV 180
Query: 185 IGMLMTMGLGNYAPELIFFSLMGINPSIALPVMMLDAAMILTASSIAFIKSDRVHWPGTF 244
G L +G+G+YA ++ L+G+NP A P+MM + S+ FIK D T
Sbjct: 181 YGALNNIGIGSYALTMVTVYLLGLNPIAAFPIMMGACTFSVPVGSVQFIKLDDYSRKITL 240
Query: 245 GIIIGGVLGVLTAAFFLSNLDINHLKILVVFIAFFTGATLL 285
GVLGVL A F + L+ L LVV + ++ T+L
Sbjct: 241 FTATFGVLGVLVAVFLVKQLNTYLLNWLVVIVLLYSAYTML 281
>gi|148358160|ref|YP_001249367.1| integral membrane protein [Legionella pneumophila str. Corby]
gi|148279933|gb|ABQ54021.1| integral membrane protein [Legionella pneumophila str. Corby]
Length = 303
Score = 62.4 bits (150), Expect = 4e-08, Method: Composition-based stats.
Identities = 65/251 (25%), Positives = 125/251 (49%), Gaps = 9/251 (3%)
Query: 47 GYVTDLLDTLGIGTFATTTTLFKATKLVEDDRKIPATMSTAHVVPVLVEALCFVTIVKVD 106
G + + DT+G+G+FA L K DD ++PA + A V+P +E+L F+ +V VD
Sbjct: 45 GVIAFIADTVGVGSFAVNVALAKLLGTFRDD-ELPAVNNGAQVLPGAIESLFFIHMVDVD 103
Query: 107 ITTLVCMAAASFTGAFVGTRITKNWNTQQVQ-RVLGILLIIAALVMVYRMLTNPGAGISS 165
+TTL+ + + G VG + + Q ++ ++ +I L++ +++ P G +
Sbjct: 104 LTTLLTLVTGTCIGGLVGGFVVSQLSKQAIRLAMICSFALIIVLLIAHQLRLLPVGGDLT 163
Query: 166 QIRGLKGIWLLVGIIFDFIIGMLMTMGLGNYAPELIFFSLMGINPSIALPVMMLDAAMIL 225
++ K L++G + G L ++G+G + LM ++P +A P+M AM
Sbjct: 164 ELHSWK---LVIGFFAMVVCGSLTSVGVGLFVMVQGVLFLMNVSPVVAFPIMTTAGAMQQ 220
Query: 226 TASSIAFIKSDRVHWPGTFGIIIGGVLGVLTAAFFLSNLDINHLKILVVFIAFFT----G 281
+++ F++ +++ T + G LGV+ + L I L L++FI + G
Sbjct: 221 PLTTLVFLQKNKIPLKKTLILSFSGCLGVMITIPIFTKLTITWLHFLLLFILIYNFLAIG 280
Query: 282 ATLLRSSIIRR 292
T LRS +++
Sbjct: 281 HTYLRSRPVKQ 291
>gi|54292985|ref|YP_125400.1| hypothetical protein lpl0021 [Legionella pneumophila str. Lens]
gi|53752817|emb|CAH14251.1| hypothetical protein [Legionella pneumophila str. Lens]
Length = 303
Score = 62.0 bits (149), Expect = 4e-08, Method: Composition-based stats.
Identities = 65/251 (25%), Positives = 125/251 (49%), Gaps = 9/251 (3%)
Query: 47 GYVTDLLDTLGIGTFATTTTLFKATKLVEDDRKIPATMSTAHVVPVLVEALCFVTIVKVD 106
G + + DT+G+G+FA L K DD ++PA + A V+P +E+L F+ +V VD
Sbjct: 45 GVIAFIADTVGVGSFAVNVALAKLLGTFRDD-ELPAVNNGAQVLPGAIESLFFIHMVDVD 103
Query: 107 ITTLVCMAAASFTGAFVGTRITKNWNTQQVQ-RVLGILLIIAALVMVYRMLTNPGAGISS 165
+TTL+ + + G VG + + Q ++ ++ +I L++ +++ P G +
Sbjct: 104 LTTLLTLVTGTCIGGLVGGFVVSQLSKQAIRLAMICSFALIIVLLIAHQLRLLPVGGDLT 163
Query: 166 QIRGLKGIWLLVGIIFDFIIGMLMTMGLGNYAPELIFFSLMGINPSIALPVMMLDAAMIL 225
++ K L++G + G L ++G+G + LM ++P +A P+M AM
Sbjct: 164 ELHSWK---LVIGFFAMVVCGSLTSVGVGLFVMVQGVLFLMNVSPVVAFPIMTTAGAMQQ 220
Query: 226 TASSIAFIKSDRVHWPGTFGIIIGGVLGVLTAAFFLSNLDINHLKILVVFIAFFT----G 281
+++ F++ +++ T + G LGV+ + L I L L++FI + G
Sbjct: 221 PLTTLVFLQKNKIPLKKTLILSFSGCLGVMITIPIFTKLTITWLHFLLLFILIYNFLAIG 280
Query: 282 ATLLRSSIIRR 292
T LRS +++
Sbjct: 281 HTYLRSRPVKQ 291
>gi|54296003|ref|YP_122372.1| hypothetical protein lpp0020 [Legionella pneumophila str. Paris]
gi|53749788|emb|CAH11168.1| hypothetical protein [Legionella pneumophila str. Paris]
Length = 303
Score = 62.0 bits (149), Expect = 4e-08, Method: Composition-based stats.
Identities = 65/251 (25%), Positives = 125/251 (49%), Gaps = 9/251 (3%)
Query: 47 GYVTDLLDTLGIGTFATTTTLFKATKLVEDDRKIPATMSTAHVVPVLVEALCFVTIVKVD 106
G + + DT+G+G+FA L K DD ++PA + A V+P +E+L F+ +V VD
Sbjct: 45 GVIAFIADTVGVGSFAVNVALAKLLGTFRDD-ELPAVNNGAQVLPGAIESLFFIHMVDVD 103
Query: 107 ITTLVCMAAASFTGAFVGTRITKNWNTQQVQ-RVLGILLIIAALVMVYRMLTNPGAGISS 165
+TTL+ + + G VG + + Q ++ ++ +I L++ +++ P G +
Sbjct: 104 LTTLLTLVTGTCIGGLVGGFVVSQLSKQAIRLAMICSFALIIVLLIAHQLRLLPVGGDLT 163
Query: 166 QIRGLKGIWLLVGIIFDFIIGMLMTMGLGNYAPELIFFSLMGINPSIALPVMMLDAAMIL 225
++ K L++G + G L ++G+G + LM ++P +A P+M AM
Sbjct: 164 ELHSWK---LVIGFFAMVVCGSLTSVGVGLFVMVQGVLFLMNVSPVVAFPIMTTAGAMQQ 220
Query: 226 TASSIAFIKSDRVHWPGTFGIIIGGVLGVLTAAFFLSNLDINHLKILVVFIAFFT----G 281
+++ F++ +++ T + G LGV+ + L I L L++FI + G
Sbjct: 221 PLTTLVFLQKNKIPLKKTLILSFSGCLGVMITIPIFTKLTITWLHFLLLFILIYNFLAIG 280
Query: 282 ATLLRSSIIRR 292
T LRS +++
Sbjct: 281 HTYLRSRPVKQ 291
>gi|52840276|ref|YP_094075.1| integral membrane protein [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|52627387|gb|AAU26128.1| integral membrane protein [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
Length = 303
Score = 62.0 bits (149), Expect = 4e-08, Method: Composition-based stats.
Identities = 65/251 (25%), Positives = 125/251 (49%), Gaps = 9/251 (3%)
Query: 47 GYVTDLLDTLGIGTFATTTTLFKATKLVEDDRKIPATMSTAHVVPVLVEALCFVTIVKVD 106
G + + DT+G+G+FA L K DD ++PA + A V+P +E+L F+ +V VD
Sbjct: 45 GVIAFIADTVGVGSFAVNVALAKLLGTFRDD-ELPAVNNGAQVLPGAIESLFFIYMVDVD 103
Query: 107 ITTLVCMAAASFTGAFVGTRITKNWNTQQVQ-RVLGILLIIAALVMVYRMLTNPGAGISS 165
+TTL+ + + G VG + + Q ++ ++ +I L++ +++ P G +
Sbjct: 104 LTTLLTLVTGTCIGGLVGGFVVSQLSKQAIRLAMICSFALIIVLLIAHQLRLLPVGGDLT 163
Query: 166 QIRGLKGIWLLVGIIFDFIIGMLMTMGLGNYAPELIFFSLMGINPSIALPVMMLDAAMIL 225
++ K L++G + G L ++G+G + LM ++P +A P+M AM
Sbjct: 164 ELHSWK---LVIGFFAMVVCGSLTSVGVGLFVMVQGVLFLMNVSPVVAFPIMTTAGAMQQ 220
Query: 226 TASSIAFIKSDRVHWPGTFGIIIGGVLGVLTAAFFLSNLDINHLKILVVFIAFFT----G 281
+++ F++ +++ T + G LGV+ + L I L L++FI + G
Sbjct: 221 PLTTLVFLQKNKIPLKKTLILSFSGCLGVMITIPIFTKLTITWLHFLLLFILIYNFLAIG 280
Query: 282 ATLLRSSIIRR 292
T LRS +++
Sbjct: 281 HTYLRSRPVKQ 291
Database: nr
Posted date: Sep 17, 2007 11:41 AM
Number of letters in database: 999,999,834
Number of sequences in database: 2,976,859
Database: /nucleus1/users/jsaw/ncbi/db/nr.01
Posted date: Sep 17, 2007 11:48 AM
Number of letters in database: 894,087,890
Number of sequences in database: 2,493,262
Lambda K H
0.331 0.143 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 968,008,292
Number of Sequences: 5470121
Number of extensions: 38568178
Number of successful extensions: 141510
Number of sequences better than 1.0e-05: 45
Number of HSP's better than 0.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 141381
Number of HSP's gapped (non-prelim): 47
length of query: 292
length of database: 1,894,087,724
effective HSP length: 131
effective length of query: 161
effective length of database: 1,177,501,873
effective search space: 189577801553
effective search space used: 189577801553
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 129 (54.3 bits)