BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SMu0474
(178 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|24379005|ref|NP_720960.1| hypothetical protein SMU.523 [... 323 2e-87
gi|77408381|ref|ZP_00785121.1| VanZF domain protein [Strept... 162 1e-38
gi|25010576|ref|NP_734971.1| hypothetical protein gbs0506 [... 160 4e-38
gi|148989850|ref|ZP_01821144.1| VanZF-related protein [Stre... 160 4e-38
gi|149007649|ref|ZP_01831266.1| VanZF-related protein [Stre... 159 5e-38
gi|76787256|ref|YP_329192.1| VanZ family protein [Streptoco... 159 5e-38
gi|22536638|ref|NP_687489.1| VanZF domain protein [Streptoc... 159 7e-38
gi|148985882|ref|ZP_01818976.1| VanZF-related protein [Stre... 159 1e-37
gi|149003388|ref|ZP_01828277.1| VanZF-related protein [Stre... 157 3e-37
gi|15900663|ref|NP_345267.1| VanZF-related protein [Strepto... 156 4e-37
gi|148997155|ref|ZP_01824809.1| VanZF-related protein [Stre... 156 4e-37
gi|111658341|ref|ZP_01409029.1| hypothetical protein SpneT_... 156 4e-37
gi|149021633|ref|ZP_01835664.1| VanZF-related protein [Stre... 156 4e-37
gi|15902721|ref|NP_358271.1| hypothetical protein spr0677 [... 152 6e-36
gi|125717486|ref|YP_001034619.1| hypothetical protein SSA_0... 152 1e-35
gi|116515988|ref|YP_816164.1| conserved hypothetical, predi... 152 1e-35
gi|157075563|gb|ABV10246.1| VanZF domain protein [Streptoco... 149 5e-35
gi|55821669|ref|YP_140111.1| Conserved hypothetical, predic... 149 9e-35
gi|55823589|ref|YP_142030.1| conserved hypothetical Region,... 149 1e-34
gi|146319328|ref|YP_001199040.1| Glycopeptide antibiotics r... 123 4e-27
gi|81097274|ref|ZP_00875572.1| VanZ like protein [Streptoco... 122 1e-26
gi|148992432|ref|ZP_01822127.1| conserved hypothetical, pre... 101 1e-20
>gi|24379005|ref|NP_720960.1| hypothetical protein SMU.523 [Streptococcus mutans UA159]
gi|24376897|gb|AAN58266.1|AE014897_12 conserved hypothetical protein [Streptococcus mutans UA159]
Length = 178
Score = 323 bits (829), Expect = 2e-87, Method: Composition-based stats.
Identities = 178/178 (100%), Positives = 178/178 (100%)
Query: 1 MTAFFDETAELKPIGRKLSWLLLVLYFIAICYMCFCPQHTIRGVQTPNIQHFGRLVILPV 60
MTAFFDETAELKPIGRKLSWLLLVLYFIAICYMCFCPQHTIRGVQTPNIQHFGRLVILPV
Sbjct: 1 MTAFFDETAELKPIGRKLSWLLLVLYFIAICYMCFCPQHTIRGVQTPNIQHFGRLVILPV 60
Query: 61 PFNSLFSLGHLSNLLKLIWVFGQNVVNIFLLFPLVLQVLLLFPNLRNKKKILLFSFCLSL 120
PFNSLFSLGHLSNLLKLIWVFGQNVVNIFLLFPLVLQVLLLFPNLRNKKKILLFSFCLSL
Sbjct: 61 PFNSLFSLGHLSNLLKLIWVFGQNVVNIFLLFPLVLQVLLLFPNLRNKKKILLFSFCLSL 120
Query: 121 SIECTQLLLDFFFDVNRVFEIDDLWTNSLGGLLAFYCHLFIQKKIRAYYQQKSQSGKA 178
SIECTQLLLDFFFDVNRVFEIDDLWTNSLGGLLAFYCHLFIQKKIRAYYQQKSQSGKA
Sbjct: 121 SIECTQLLLDFFFDVNRVFEIDDLWTNSLGGLLAFYCHLFIQKKIRAYYQQKSQSGKA 178
>gi|77408381|ref|ZP_00785121.1| VanZF domain protein [Streptococcus agalactiae COH1]
gi|77172984|gb|EAO76113.1| VanZF domain protein [Streptococcus agalactiae COH1]
Length = 171
Score = 162 bits (409), Expect = 1e-38, Method: Composition-based stats.
Identities = 85/159 (53%), Positives = 110/159 (69%)
Query: 4 FFDETAELKPIGRKLSWLLLVLYFIAICYMCFCPQHTIRGVQTPNIQHFGRLVILPVPFN 63
F E EL I R+ W+L+V+Y + I MCF PQ I GV TPN+Q FGR+V L VPFN
Sbjct: 5 LFTEDGELTKISRRFVWMLVVIYCLIIVRMCFGPQIMIEGVSTPNVQRFGRIVALLVPFN 64
Query: 64 SLFSLGHLSNLLKLIWVFGQNVVNIFLLFPLVLQVLLLFPNLRNKKKILLFSFCLSLSIE 123
S SL L++ ++ WV GQNVVNI LLFPL++ +L L P+LR K ++L +F +SL IE
Sbjct: 65 SFRSLDQLTSFKEIFWVIGQNVVNILLLFPLIIGLLSLKPSLRKYKSVILLAFLMSLFIE 124
Query: 124 CTQLLLDFFFDVNRVFEIDDLWTNSLGGLLAFYCHLFIQ 162
CTQ++LD D NRVFEIDDLWTN+LGG A + + I+
Sbjct: 125 CTQVVLDILIDANRVFEIDDLWTNTLGGPFALWSYRNIK 163
>gi|25010576|ref|NP_734971.1| hypothetical protein gbs0506 [Streptococcus agalactiae NEM316]
gi|77413562|ref|ZP_00789750.1| VanZF domain protein [Streptococcus agalactiae 515]
gi|23094929|emb|CAD46150.1| Unknown [Streptococcus agalactiae NEM316]
gi|77160391|gb|EAO71514.1| VanZF domain protein [Streptococcus agalactiae 515]
Length = 171
Score = 160 bits (404), Expect = 4e-38, Method: Composition-based stats.
Identities = 84/156 (53%), Positives = 109/156 (69%)
Query: 7 ETAELKPIGRKLSWLLLVLYFIAICYMCFCPQHTIRGVQTPNIQHFGRLVILPVPFNSLF 66
E EL I R+ W+L+V+Y + I MCF PQ I GV TPN+Q FGR+V L VPFNS
Sbjct: 8 EDGELTKISRRFVWMLVVIYCLIIVRMCFGPQIMIEGVSTPNVQRFGRIVALLVPFNSFR 67
Query: 67 SLGHLSNLLKLIWVFGQNVVNIFLLFPLVLQVLLLFPNLRNKKKILLFSFCLSLSIECTQ 126
SL L++ ++ WV GQNVVNI LLFPL++ +L L P+LR K ++L +F +SL IECTQ
Sbjct: 68 SLDQLTSFKEIFWVIGQNVVNILLLFPLIIGLLSLKPSLRKYKSVILLAFLMSLFIECTQ 127
Query: 127 LLLDFFFDVNRVFEIDDLWTNSLGGLLAFYCHLFIQ 162
++LD D NRVFEIDDLWTN+LGG A + + I+
Sbjct: 128 VVLDILIDANRVFEIDDLWTNTLGGPFALWSYRNIK 163
>gi|148989850|ref|ZP_01821144.1| VanZF-related protein [Streptococcus pneumoniae SP6-BS73]
gi|147924792|gb|EDK75876.1| VanZF-related protein [Streptococcus pneumoniae SP6-BS73]
Length = 160
Score = 160 bits (404), Expect = 4e-38, Method: Composition-based stats.
Identities = 90/146 (61%), Positives = 110/146 (75%), Gaps = 2/146 (1%)
Query: 23 LVLYFIAICYMCFCPQ-HTIRGVQTPNIQHFGRLVILPVPFNSLFSLGHLSNLLKLIWVF 81
++ Y I I Y CF PQ + GV TP IQH GRLV L PFNSL+ LG +S++ +L W+F
Sbjct: 14 VIFYSICIVYFCFTPQEQSTVGVGTPGIQHLGRLVFLLTPFNSLWKLGEVSDIGQLCWIF 73
Query: 82 GQNVVNIFLLFPLVLQVLLLFPNLRNKKKILLFSFCLSLSIECTQLLLDFFFDVNRVFEI 141
QNV+N+FL FPL+ Q+L LFPNLR KK+LLFSF +SL IECTQL+LDFFFD NRVFEI
Sbjct: 74 LQNVLNVFLFFPLIFQLLYLFPNLRKTKKVLLFSFLVSLGIECTQLILDFFFDFNRVFEI 133
Query: 142 DDLWTNSLGGLLAFYCHLFIQK-KIR 166
DDLWTN+LGG LA+ + + K KIR
Sbjct: 134 DDLWTNTLGGYLAWLLYKRLHKNKIR 159
>gi|149007649|ref|ZP_01831266.1| VanZF-related protein [Streptococcus pneumoniae SP18-BS74]
gi|147760804|gb|EDK67775.1| VanZF-related protein [Streptococcus pneumoniae SP18-BS74]
Length = 160
Score = 159 bits (403), Expect = 5e-38, Method: Composition-based stats.
Identities = 89/146 (60%), Positives = 111/146 (76%), Gaps = 2/146 (1%)
Query: 23 LVLYFIAICYMCFCPQ-HTIRGVQTPNIQHFGRLVILPVPFNSLFSLGHLSNLLKLIWVF 81
++ Y I I Y CF PQ + GV TP+IQH GRLV L PFNSL+ LG +S++ +L W+F
Sbjct: 14 VIFYSICIVYFCFTPQEQSTVGVGTPDIQHLGRLVFLLTPFNSLWKLGEVSDIGQLCWIF 73
Query: 82 GQNVVNIFLLFPLVLQVLLLFPNLRNKKKILLFSFCLSLSIECTQLLLDFFFDVNRVFEI 141
QN++N+FL FPL+ Q+L LFPNLR KK+LLFSF +SL IECTQL+LDFFFD NRVFEI
Sbjct: 74 LQNILNVFLFFPLIFQLLYLFPNLRKTKKVLLFSFLVSLGIECTQLILDFFFDFNRVFEI 133
Query: 142 DDLWTNSLGGLLAFYCHLFIQK-KIR 166
DDLWTN+LGG LA+ + + K KIR
Sbjct: 134 DDLWTNTLGGYLAWLLYKRLHKNKIR 159
>gi|76787256|ref|YP_329192.1| VanZ family protein [Streptococcus agalactiae A909]
gi|77405602|ref|ZP_00782692.1| VanZF domain protein [Streptococcus agalactiae H36B]
gi|77411418|ref|ZP_00787764.1| VanZF domain protein [Streptococcus agalactiae CJB111]
gi|76562313|gb|ABA44897.1| VanZ family protein [Streptococcus agalactiae A909]
gi|77162504|gb|EAO73469.1| VanZF domain protein [Streptococcus agalactiae CJB111]
gi|77175824|gb|EAO78603.1| VanZF domain protein [Streptococcus agalactiae H36B]
Length = 171
Score = 159 bits (403), Expect = 5e-38, Method: Composition-based stats.
Identities = 83/156 (53%), Positives = 109/156 (69%)
Query: 7 ETAELKPIGRKLSWLLLVLYFIAICYMCFCPQHTIRGVQTPNIQHFGRLVILPVPFNSLF 66
E EL I R+ W+L+++Y + I MCF PQ I GV TPN+Q FGR+V L VPFNS
Sbjct: 8 EDGELTKISRRFVWMLVIIYCLIIVRMCFGPQIMIEGVSTPNVQRFGRIVALLVPFNSFR 67
Query: 67 SLGHLSNLLKLIWVFGQNVVNIFLLFPLVLQVLLLFPNLRNKKKILLFSFCLSLSIECTQ 126
SL L++ ++ WV GQNVVNI LLFPL++ +L L P+LR K ++L +F +SL IECTQ
Sbjct: 68 SLDQLTSFKEIFWVIGQNVVNILLLFPLIIGLLSLKPSLRKYKSVILLAFLMSLFIECTQ 127
Query: 127 LLLDFFFDVNRVFEIDDLWTNSLGGLLAFYCHLFIQ 162
++LD D NRVFEIDDLWTN+LGG A + + I+
Sbjct: 128 VVLDILIDANRVFEIDDLWTNTLGGPFALWTYRNIK 163
>gi|22536638|ref|NP_687489.1| VanZF domain protein [Streptococcus agalactiae 2603V/R]
gi|76797754|ref|ZP_00780021.1| VanZF domain protein [Streptococcus agalactiae 18RS21]
gi|22533476|gb|AAM99361.1|AE014212_20 VanZF domain protein [Streptococcus agalactiae 2603V/R]
gi|76586902|gb|EAO63393.1| VanZF domain protein [Streptococcus agalactiae 18RS21]
Length = 171
Score = 159 bits (402), Expect = 7e-38, Method: Composition-based stats.
Identities = 82/156 (52%), Positives = 109/156 (69%)
Query: 7 ETAELKPIGRKLSWLLLVLYFIAICYMCFCPQHTIRGVQTPNIQHFGRLVILPVPFNSLF 66
E EL I R+ W+L+++Y + I MCF PQ I GV TPN+Q FGR+V L VPFNS
Sbjct: 8 EDGELTKISRRFVWMLVIIYCLIIVRMCFGPQIMIEGVSTPNVQRFGRIVALLVPFNSFR 67
Query: 67 SLGHLSNLLKLIWVFGQNVVNIFLLFPLVLQVLLLFPNLRNKKKILLFSFCLSLSIECTQ 126
SL L++ ++ WV GQNVVNI LLFPL++ +L L P+LR K ++L +F +S+ IECTQ
Sbjct: 68 SLDQLTSFKEIFWVIGQNVVNILLLFPLIIGLLSLKPSLRKYKSVILLAFLMSIFIECTQ 127
Query: 127 LLLDFFFDVNRVFEIDDLWTNSLGGLLAFYCHLFIQ 162
++LD D NRVFEIDDLWTN+LGG A + + I+
Sbjct: 128 VVLDILIDANRVFEIDDLWTNTLGGPFALWTYRNIK 163
>gi|148985882|ref|ZP_01818976.1| VanZF-related protein [Streptococcus pneumoniae SP3-BS71]
gi|147922028|gb|EDK73152.1| VanZF-related protein [Streptococcus pneumoniae SP3-BS71]
Length = 160
Score = 159 bits (401), Expect = 1e-37, Method: Composition-based stats.
Identities = 88/146 (60%), Positives = 111/146 (76%), Gaps = 2/146 (1%)
Query: 23 LVLYFIAICYMCFCPQ-HTIRGVQTPNIQHFGRLVILPVPFNSLFSLGHLSNLLKLIWVF 81
++ Y I I Y CF PQ + GV TP+IQH GRLV L PFNSL+ LG +S++ +L W+F
Sbjct: 14 VIFYSICIVYFCFTPQEQSTVGVGTPDIQHLGRLVFLLTPFNSLWKLGEVSDIGQLCWIF 73
Query: 82 GQNVVNIFLLFPLVLQVLLLFPNLRNKKKILLFSFCLSLSIECTQLLLDFFFDVNRVFEI 141
QN++N+FL FPL+ Q+L LFPNLR KK+LLFSF +SL IECTQL+LDFFFD NRVFEI
Sbjct: 74 LQNILNVFLFFPLIFQLLYLFPNLRKTKKVLLFSFLVSLGIECTQLILDFFFDFNRVFEI 133
Query: 142 DDLWTNSLGGLLAFYCHLFIQK-KIR 166
DDLWTN+LGG L++ + + K KIR
Sbjct: 134 DDLWTNTLGGYLSWLLYKRLHKNKIR 159
>gi|149003388|ref|ZP_01828277.1| VanZF-related protein [Streptococcus pneumoniae SP14-BS69]
gi|147758571|gb|EDK65569.1| VanZF-related protein [Streptococcus pneumoniae SP14-BS69]
Length = 160
Score = 157 bits (396), Expect = 3e-37, Method: Composition-based stats.
Identities = 86/140 (61%), Positives = 108/140 (77%), Gaps = 3/140 (2%)
Query: 27 FIAICYMCFC--PQ-HTIRGVQTPNIQHFGRLVILPVPFNSLFSLGHLSNLLKLIWVFGQ 83
F +IC +CFC PQ + GV TP+IQH GRLV L PFNSL+ LG +S++ +L W+F Q
Sbjct: 16 FYSICIVCFCFTPQEQSTVGVGTPDIQHLGRLVFLLTPFNSLWKLGEVSDIGQLCWIFLQ 75
Query: 84 NVVNIFLLFPLVLQVLLLFPNLRNKKKILLFSFCLSLSIECTQLLLDFFFDVNRVFEIDD 143
N++N+FL FPL+ Q+L LFPNLR KK+LLFSF +SL IECTQL+LDFFFD NRVFEIDD
Sbjct: 76 NILNVFLFFPLIFQLLYLFPNLRKTKKVLLFSFLVSLGIECTQLILDFFFDFNRVFEIDD 135
Query: 144 LWTNSLGGLLAFYCHLFIQK 163
LWTN+LGG LA+ + + K
Sbjct: 136 LWTNTLGGYLAWLLYKRLHK 155
>gi|15900663|ref|NP_345267.1| VanZF-related protein [Streptococcus pneumoniae TIGR4]
gi|14972244|gb|AAK74907.1| VanZF-related protein [Streptococcus pneumoniae TIGR4]
Length = 159
Score = 156 bits (395), Expect = 4e-37, Method: Composition-based stats.
Identities = 86/140 (61%), Positives = 107/140 (76%), Gaps = 3/140 (2%)
Query: 27 FIAICYMCFC--PQ-HTIRGVQTPNIQHFGRLVILPVPFNSLFSLGHLSNLLKLIWVFGQ 83
F +IC +CFC PQ + GV TP IQH GRLV L PFNSL+ LG +S++ +L W+F Q
Sbjct: 15 FYSICIVCFCFTPQEQSTVGVGTPGIQHLGRLVFLLTPFNSLWKLGEVSDIGQLCWIFLQ 74
Query: 84 NVVNIFLLFPLVLQVLLLFPNLRNKKKILLFSFCLSLSIECTQLLLDFFFDVNRVFEIDD 143
N++N+FL FPL+ Q+L LFPNLR KK+LLFSF +SL IECTQL+LDFFFD NRVFEIDD
Sbjct: 75 NILNVFLFFPLIFQLLYLFPNLRKTKKVLLFSFLVSLGIECTQLILDFFFDFNRVFEIDD 134
Query: 144 LWTNSLGGLLAFYCHLFIQK 163
LWTN+LGG LA+ + + K
Sbjct: 135 LWTNTLGGYLAWLLYKRLHK 154
>gi|148997155|ref|ZP_01824809.1| VanZF-related protein [Streptococcus pneumoniae SP11-BS70]
gi|147756855|gb|EDK63895.1| VanZF-related protein [Streptococcus pneumoniae SP11-BS70]
Length = 160
Score = 156 bits (395), Expect = 4e-37, Method: Composition-based stats.
Identities = 86/140 (61%), Positives = 107/140 (76%), Gaps = 3/140 (2%)
Query: 27 FIAICYMCFC--PQ-HTIRGVQTPNIQHFGRLVILPVPFNSLFSLGHLSNLLKLIWVFGQ 83
F +IC +CFC PQ + GV TP IQH GRLV L PFNSL+ LG +S++ +L W+F Q
Sbjct: 16 FYSICIVCFCFTPQEQSTVGVGTPGIQHLGRLVFLLTPFNSLWKLGEVSDIGQLCWIFLQ 75
Query: 84 NVVNIFLLFPLVLQVLLLFPNLRNKKKILLFSFCLSLSIECTQLLLDFFFDVNRVFEIDD 143
N++N+FL FPL+ Q+L LFPNLR KK+LLFSF +SL IECTQL+LDFFFD NRVFEIDD
Sbjct: 76 NILNVFLFFPLIFQLLYLFPNLRKTKKVLLFSFLVSLGIECTQLILDFFFDFNRVFEIDD 135
Query: 144 LWTNSLGGLLAFYCHLFIQK 163
LWTN+LGG LA+ + + K
Sbjct: 136 LWTNTLGGYLAWLLYKRLHK 155
>gi|111658341|ref|ZP_01409029.1| hypothetical protein SpneT_02000481 [Streptococcus pneumoniae
TIGR4]
gi|149010605|ref|ZP_01831976.1| VanZF-related protein [Streptococcus pneumoniae SP19-BS75]
gi|147765086|gb|EDK72015.1| VanZF-related protein [Streptococcus pneumoniae SP19-BS75]
Length = 160
Score = 156 bits (395), Expect = 4e-37, Method: Composition-based stats.
Identities = 86/140 (61%), Positives = 107/140 (76%), Gaps = 3/140 (2%)
Query: 27 FIAICYMCFC--PQ-HTIRGVQTPNIQHFGRLVILPVPFNSLFSLGHLSNLLKLIWVFGQ 83
F +IC +CFC PQ + GV TP IQH GRLV L PFNSL+ LG +S++ +L W+F Q
Sbjct: 16 FYSICIVCFCFTPQEQSTVGVGTPGIQHLGRLVFLLTPFNSLWKLGEVSDIGQLCWIFLQ 75
Query: 84 NVVNIFLLFPLVLQVLLLFPNLRNKKKILLFSFCLSLSIECTQLLLDFFFDVNRVFEIDD 143
N++N+FL FPL+ Q+L LFPNLR KK+LLFSF +SL IECTQL+LDFFFD NRVFEIDD
Sbjct: 76 NILNVFLFFPLIFQLLYLFPNLRKTKKVLLFSFLVSLGIECTQLILDFFFDFNRVFEIDD 135
Query: 144 LWTNSLGGLLAFYCHLFIQK 163
LWTN+LGG LA+ + + K
Sbjct: 136 LWTNTLGGYLAWLLYKRLHK 155
>gi|149021633|ref|ZP_01835664.1| VanZF-related protein [Streptococcus pneumoniae SP23-BS72]
gi|147930094|gb|EDK81080.1| VanZF-related protein [Streptococcus pneumoniae SP23-BS72]
Length = 160
Score = 156 bits (395), Expect = 4e-37, Method: Composition-based stats.
Identities = 87/144 (60%), Positives = 109/144 (75%), Gaps = 4/144 (2%)
Query: 27 FIAICYMCFC---PQHTIRGVQTPNIQHFGRLVILPVPFNSLFSLGHLSNLLKLIWVFGQ 83
F +IC +CFC + + GV TP IQH GRLV L PFNSL+ LG +S++ +L W+F Q
Sbjct: 16 FYSICIVCFCFTPQEQSTVGVGTPGIQHLGRLVFLLTPFNSLWKLGEVSDIGQLCWIFLQ 75
Query: 84 NVVNIFLLFPLVLQVLLLFPNLRNKKKILLFSFCLSLSIECTQLLLDFFFDVNRVFEIDD 143
N++N+FL FPL+ Q+L LFPNLR KK+LLFSF +SL IECTQL+LDFFFD NRVFEIDD
Sbjct: 76 NILNVFLFFPLIFQLLYLFPNLRKTKKVLLFSFLVSLGIECTQLILDFFFDFNRVFEIDD 135
Query: 144 LWTNSLGGLLAFYCHLFIQK-KIR 166
LWTN+LGG LA+ + + K KIR
Sbjct: 136 LWTNTLGGYLAWLLYKRLHKNKIR 159
>gi|15902721|ref|NP_358271.1| hypothetical protein spr0677 [Streptococcus pneumoniae R6]
gi|15458265|gb|AAK99481.1| Hypothetical protein [Streptococcus pneumoniae R6]
Length = 155
Score = 152 bits (385), Expect = 6e-36, Method: Composition-based stats.
Identities = 84/143 (58%), Positives = 105/143 (73%), Gaps = 3/143 (2%)
Query: 21 LLLVLYFIAICYMCFCPQHTIRGVQTPNIQHFGRLVILPVPFNSLFSLGHLSNLLKLIWV 80
L + +Y + I Y CF PQ TP IQH GRLV L PFNSL+ LG +S++ +L W+
Sbjct: 11 LGVAVYSLCIVYFCFTPQEQ---SGTPGIQHLGRLVFLLTPFNSLWKLGEVSDIGQLCWI 67
Query: 81 FGQNVVNIFLLFPLVLQVLLLFPNLRNKKKILLFSFCLSLSIECTQLLLDFFFDVNRVFE 140
F QN++N+FL FPL+ Q+L LFPNLR KK+LLFSF +SL IECTQL+LDFFFD NRVFE
Sbjct: 68 FLQNILNVFLFFPLIFQLLYLFPNLRKTKKVLLFSFLVSLGIECTQLILDFFFDFNRVFE 127
Query: 141 IDDLWTNSLGGLLAFYCHLFIQK 163
IDDLWTN+LGG LA+ + + K
Sbjct: 128 IDDLWTNTLGGYLAWLLYKRLHK 150
>gi|125717486|ref|YP_001034619.1| hypothetical protein SSA_0629 [Streptococcus sanguinis SK36]
gi|125497403|gb|ABN44069.1| Conserved hypothetical protein [Streptococcus sanguinis SK36]
Length = 179
Score = 152 bits (383), Expect = 1e-35, Method: Composition-based stats.
Identities = 84/164 (51%), Positives = 111/164 (67%), Gaps = 8/164 (4%)
Query: 4 FFDETAELKPIGRKL----SWLLLVLYFIAICYMCFCPQHTIRGVQTPNIQHFGRLVILP 59
+ EL GRKL SWL YF+ +C +CF PQ G++TP IQ+FGR+V+L
Sbjct: 7 YLTSDGELTAKGRKLLVGGSWL----YFLMLCILCFIPQVPEPGMETPGIQYFGRIVVLL 62
Query: 60 VPFNSLFSLGHLSNLLKLIWVFGQNVVNIFLLFPLVLQVLLLFPNLRNKKKILLFSFCLS 119
+PFNS ++G +++ ++L+ VF QN+ NIFLL PL+ Q+L LFP LR KKI+ SF +S
Sbjct: 63 IPFNSFVNIGEITSWIQLVKVFIQNLANIFLLSPLIFQLLCLFPKLRKTKKIVWLSFGMS 122
Query: 120 LSIECTQLLLDFFFDVNRVFEIDDLWTNSLGGLLAFYCHLFIQK 163
LSIE TQ+LLD + NRVFEIDDLWTN+LGG LA+ QK
Sbjct: 123 LSIEVTQILLDLLINANRVFEIDDLWTNTLGGYLAWRAFQLGQK 166
>gi|116515988|ref|YP_816164.1| conserved hypothetical, predicted membrane protein [Streptococcus
pneumoniae D39]
gi|116076564|gb|ABJ54284.1| conserved hypothetical, predicted membrane protein [Streptococcus
pneumoniae D39]
Length = 143
Score = 152 bits (383), Expect = 1e-35, Method: Composition-based stats.
Identities = 83/141 (58%), Positives = 104/141 (73%), Gaps = 3/141 (2%)
Query: 23 LVLYFIAICYMCFCPQHTIRGVQTPNIQHFGRLVILPVPFNSLFSLGHLSNLLKLIWVFG 82
+ +Y + I Y CF PQ TP IQH GRLV L PFNSL+ LG +S++ +L W+F
Sbjct: 1 MAVYSLCIVYFCFTPQEQ---SGTPGIQHLGRLVFLLTPFNSLWKLGEVSDIGQLCWIFL 57
Query: 83 QNVVNIFLLFPLVLQVLLLFPNLRNKKKILLFSFCLSLSIECTQLLLDFFFDVNRVFEID 142
QN++N+FL FPL+ Q+L LFPNLR KK+LLFSF +SL IECTQL+LDFFFD NRVFEID
Sbjct: 58 QNILNVFLFFPLIFQLLYLFPNLRKTKKVLLFSFLVSLGIECTQLILDFFFDFNRVFEID 117
Query: 143 DLWTNSLGGLLAFYCHLFIQK 163
DLWTN+LGG LA+ + + K
Sbjct: 118 DLWTNTLGGYLAWLLYKRLHK 138
>gi|157075563|gb|ABV10246.1| VanZF domain protein [Streptococcus gordonii str. Challis substr.
CH1]
Length = 179
Score = 149 bits (377), Expect = 5e-35, Method: Composition-based stats.
Identities = 82/164 (50%), Positives = 111/164 (67%), Gaps = 8/164 (4%)
Query: 4 FFDETAELKPIGRKL----SWLLLVLYFIAICYMCFCPQHTIRGVQTPNIQHFGRLVILP 59
+ EL GR+L SWL YF+ +C +CF PQ G++TP +Q+FGR+V+L
Sbjct: 7 YLTSDGELTAKGRRLLIGGSWL----YFLMLCVLCFIPQVPEPGMETPGVQYFGRIVVLL 62
Query: 60 VPFNSLFSLGHLSNLLKLIWVFGQNVVNIFLLFPLVLQVLLLFPNLRNKKKILLFSFCLS 119
VPFNS ++G +++ ++L+ VF QN+ NIFLL PL+ Q+L LFP LR KK++ SF +S
Sbjct: 63 VPFNSFVNIGEITSWIQLVKVFIQNLANIFLLSPLIFQLLWLFPKLRKTKKVVWLSFGMS 122
Query: 120 LSIECTQLLLDFFFDVNRVFEIDDLWTNSLGGLLAFYCHLFIQK 163
LSIE TQ+LLD + NRVFEIDDLWTN+LGG LA+ QK
Sbjct: 123 LSIEVTQILLDLLINANRVFEIDDLWTNTLGGYLAWRVFQLGQK 166
>gi|55821669|ref|YP_140111.1| Conserved hypothetical, predicted membrane protein (TMS4)
[Streptococcus thermophilus LMG 18311]
gi|116628381|ref|YP_821000.1| Glycopeptide antibiotics resistance protein [Streptococcus
thermophilus LMD-9]
gi|55737654|gb|AAV61296.1| Conserved hypothetical, predicted membrane protein (TMS4)
[Streptococcus thermophilus LMG 18311]
gi|116101658|gb|ABJ66804.1| Glycopeptide antibiotics resistance protein [Streptococcus
thermophilus LMD-9]
Length = 175
Score = 149 bits (375), Expect = 9e-35, Method: Composition-based stats.
Identities = 81/172 (47%), Positives = 120/172 (69%), Gaps = 1/172 (0%)
Query: 1 MTAFFDETAELKPIGRKLSWLLLVLYFIAICYMCFCPQH-TIRGVQTPNIQHFGRLVILP 59
+T + D+ EL P GRKLS +L+ Y + + +C+ PQ+ + GV+TP IQHFGR+V+L
Sbjct: 4 LTTWVDKNGELTPKGRKLSQVLVCSYLLCLVLLCWTPQYGLVEGVETPGIQHFGRVVVLL 63
Query: 60 VPFNSLFSLGHLSNLLKLIWVFGQNVVNIFLLFPLVLQVLLLFPNLRNKKKILLFSFCLS 119
PFNSL + L +L ++++V GQNV NIFLL PL+L +L L+P R+ KK+L+ + +S
Sbjct: 64 TPFNSLTNFNQLDSLKEIVFVLGQNVTNIFLLSPLILGLLALYPRFRSWKKVLVATLAMS 123
Query: 120 LSIECTQLLLDFFFDVNRVFEIDDLWTNSLGGLLAFYCHLFIQKKIRAYYQQ 171
L+IE Q++LD D NRVFE+DDLWTN+LGGL+A + + K I+ Y+ +
Sbjct: 124 LTIEIGQVILDLLIDANRVFELDDLWTNTLGGLVALGAYRLLVKLIQTYFNE 175
>gi|55823589|ref|YP_142030.1| conserved hypothetical Region, VanZF-related [Streptococcus
thermophilus CNRZ1066]
gi|55739574|gb|AAV63215.1| conserved hypothetical Region, VanZF-related [Streptococcus
thermophilus CNRZ1066]
Length = 175
Score = 149 bits (375), Expect = 1e-34, Method: Composition-based stats.
Identities = 81/172 (47%), Positives = 120/172 (69%), Gaps = 1/172 (0%)
Query: 1 MTAFFDETAELKPIGRKLSWLLLVLYFIAICYMCFCPQHT-IRGVQTPNIQHFGRLVILP 59
+T + D+ EL P GRKLS +L+ Y + + +C+ PQ+ + GV+TP IQHFGR+V+L
Sbjct: 4 LTTWVDKNGELTPKGRKLSQVLVCSYLLCLVLLCWTPQYRLVEGVETPGIQHFGRVVVLL 63
Query: 60 VPFNSLFSLGHLSNLLKLIWVFGQNVVNIFLLFPLVLQVLLLFPNLRNKKKILLFSFCLS 119
PFNSL + L +L ++++V GQNV NIFLL PL+L +L L+P R+ KK+L+ + +S
Sbjct: 64 TPFNSLTNFNQLDSLKEIVFVLGQNVTNIFLLSPLILGLLALYPRFRSWKKVLVATLAMS 123
Query: 120 LSIECTQLLLDFFFDVNRVFEIDDLWTNSLGGLLAFYCHLFIQKKIRAYYQQ 171
L+IE Q++LD D NRVFE+DDLWTN+LGGL+A + + K I+ Y+ +
Sbjct: 124 LTIEIGQVILDLLIDANRVFELDDLWTNTLGGLVALGAYRLLVKLIQTYFNE 175
>gi|146319328|ref|YP_001199040.1| Glycopeptide antibiotics resistance protein [Streptococcus suis
05ZYH33]
gi|146321532|ref|YP_001201243.1| Glycopeptide antibiotics resistance protein [Streptococcus suis
98HAH33]
gi|145690134|gb|ABP90640.1| Glycopeptide antibiotics resistance protein [Streptococcus suis
05ZYH33]
gi|145692338|gb|ABP92843.1| Glycopeptide antibiotics resistance protein [Streptococcus suis
98HAH33]
Length = 175
Score = 123 bits (309), Expect = 4e-27, Method: Composition-based stats.
Identities = 75/168 (44%), Positives = 104/168 (61%), Gaps = 3/168 (1%)
Query: 1 MTAFFDETAELKPIGRKLSWLLLVLYFIAICYMCFCPQH---TIRGVQTPNIQHFGRLVI 57
M FF L +GR++ L Y +AI +CF PQ + TP I GRL +
Sbjct: 1 MRKFFQADGNLTKLGRQICKTLAGAYALAIVLLCFLPQTWYPQYKDFSTPGIIQIGRLYL 60
Query: 58 LPVPFNSLFSLGHLSNLLKLIWVFGQNVVNIFLLFPLVLQVLLLFPNLRNKKKILLFSFC 117
LP PFNS+ + + +L L W+F QN+ NIFLLFPL+ +L L R+ + ++ +SFC
Sbjct: 61 LPTPFNSIVNGDKVDSLADLGWIFLQNITNIFLLFPLIFLLLFLREEWRSLRAVIRYSFC 120
Query: 118 LSLSIECTQLLLDFFFDVNRVFEIDDLWTNSLGGLLAFYCHLFIQKKI 165
+SL IECTQLLLD D RVFEIDDLWTN++GG+LA++ + I++ I
Sbjct: 121 ISLFIECTQLLLDLLIDAQRVFEIDDLWTNTMGGILAYFSYSLIKRGI 168
>gi|81097274|ref|ZP_00875572.1| VanZ like protein [Streptococcus suis 89/1591]
gi|80976682|gb|EAP40267.1| VanZ like protein [Streptococcus suis 89/1591]
Length = 175
Score = 122 bits (305), Expect = 1e-26, Method: Composition-based stats.
Identities = 75/168 (44%), Positives = 103/168 (61%), Gaps = 3/168 (1%)
Query: 1 MTAFFDETAELKPIGRKLSWLLLVLYFIAICYMCFCPQH---TIRGVQTPNIQHFGRLVI 57
M FF L +GR++ L Y +AI +CF PQ + TP I GRL +
Sbjct: 1 MRKFFQADGNLTMLGRQICKTLAGAYALAIVLLCFLPQTWYPQYKDFSTPGIIQIGRLYL 60
Query: 58 LPVPFNSLFSLGHLSNLLKLIWVFGQNVVNIFLLFPLVLQVLLLFPNLRNKKKILLFSFC 117
LP PFNS+ + + +L L W+F QN+ NIFLLFPL+ +L L R+ + ++ +SFC
Sbjct: 61 LPTPFNSIVNGDKVDSLADLGWIFLQNITNIFLLFPLIFLLLFLREEWRSLRAVIRYSFC 120
Query: 118 LSLSIECTQLLLDFFFDVNRVFEIDDLWTNSLGGLLAFYCHLFIQKKI 165
+SL IECTQLLLD D RVFEIDDLWTN++GG+LA++ + I + I
Sbjct: 121 ISLFIECTQLLLDLLIDAQRVFEIDDLWTNTMGGILAYFTYSLIMRGI 168
>gi|148992432|ref|ZP_01822127.1| conserved hypothetical, predicted membrane protein [Streptococcus
pneumoniae SP9-BS68]
gi|147928749|gb|EDK79762.1| conserved hypothetical, predicted membrane protein [Streptococcus
pneumoniae SP9-BS68]
Length = 91
Score = 101 bits (252), Expect = 1e-20, Method: Composition-based stats.
Identities = 56/83 (67%), Positives = 68/83 (81%)
Query: 81 FGQNVVNIFLLFPLVLQVLLLFPNLRNKKKILLFSFCLSLSIECTQLLLDFFFDVNRVFE 140
F QN++N+FL FPL+ Q+L LFPNLR KK+LLFSF +SL IECTQL+LDFFFD NRVFE
Sbjct: 4 FLQNILNVFLFFPLIFQLLYLFPNLRKTKKVLLFSFLVSLGIECTQLILDFFFDFNRVFE 63
Query: 141 IDDLWTNSLGGLLAFYCHLFIQK 163
IDDLWTN+LGG LA+ + + K
Sbjct: 64 IDDLWTNTLGGYLAWLLYKRLHK 86
Database: nr
Posted date: Sep 17, 2007 11:41 AM
Number of letters in database: 999,999,834
Number of sequences in database: 2,976,859
Database: /nucleus1/users/jsaw/ncbi/db/nr.01
Posted date: Sep 17, 2007 11:48 AM
Number of letters in database: 894,087,890
Number of sequences in database: 2,493,262
Lambda K H
0.334 0.148 0.473
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 636,429,206
Number of Sequences: 5470121
Number of extensions: 24304643
Number of successful extensions: 100819
Number of sequences better than 1.0e-05: 27
Number of HSP's better than 0.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 100778
Number of HSP's gapped (non-prelim): 32
length of query: 178
length of database: 1,894,087,724
effective HSP length: 124
effective length of query: 54
effective length of database: 1,215,792,720
effective search space: 65652806880
effective search space used: 65652806880
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 125 (52.8 bits)